Notechis scutatus (mainland tiger snake): 113416347
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Entry
113416347 CDS
T09026
Symbol
COL24A1
Name
(RefSeq) collagen alpha-1(XXIV) chain
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
nss
Notechis scutatus (mainland tiger snake)
Pathway
nss04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nss00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
113416347 (COL24A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
nss00536
]
113416347 (COL24A1)
Glycosaminoglycan binding proteins [BR:
nss00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113416347 (COL24A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
113416347
NCBI-ProteinID:
XP_026529954
UniProt:
A0A6J1UQH6
LinkDB
All DBs
Position
Unknown
AA seq
1557 aa
AA seq
DB search
MHLGAQRTRSGSISPTTQTKTLLLLTLCIAVGCVQRQQEGIDVLHHLGLSGQTMHHPTTG
PLIRLSHASSPQGIHLTEFGVLLSIQTAIEVPISQVGVSALGSNFAMLISLRSYKVNNAF
LFSIRNKNRLQFGIQLLPRKIIVHTGGKHSVYFDYRVHDEQWHTFAIDVTEKSVSLYTQC
GRKHFRKEILSKVQFDSHSLFTLGRMNFQSVHFEGVLCQLDIIPSAQTLTNYCKYVKLQC
RQADTYWFHTISPSEENSSKLLDEVTQPLSKRKGTLNLHVSKSSLVKDPQELMQTTSSLT
PLYLGNITALSEPNDQQIVNVSKKHQHYVSKRKGDSLPLTKLTLNYTDSMTENMKRKMNS
SLLFSIKQPNAKHMMKNTSKPYLYELMDMHPFLNTTLHEDFHSEPLINRFSSWDEHTVQT
DEIYNAEGNYEFDADYYDYDYEEWERLLDMENLKGPKGDPGQVGPPGPPGLPGPAGKRGP
RGIPGPHGNPGLPGLPGSKGHKGDPGFSPGKAKRGEKGDAGLTGLPGIEGLKGRKGLMGY
PGPRGIQGEQGILGMTGNPGALGYPGRQGLAGPEGNPGPKGVRGFIGPPGVAGNPGPEGE
RGIPGLPGKRGIKGRIGLPGDFGNRGPPGPDGSPGNVGGVGPPGFPGLRGEEGPVGPSGV
TGPRGKPGRKGFAGEPGLEGLKGETGDQGVLGKTGETGPIGSPGEIGLSGGPGEKGDRGN
PGPVGPPGEKGVMGYPGPPGGPGDVGPQGLPGPTGARGPPGPQGSKGQRGPRGQDGPLGE
QGTEGIKGEVGDSGKKGIHGLIGKAGIPGERGSPGPPGLPGLPGSIGDRGPSGEPGPRGE
QGGAGPVGEAGSEGSPGPEGEPGPQGEPGTKGDYGPVGNIGAAGEQGIRGIRGPPGEDGV
QGKDGLKGSLGDPGLPGEDGEKGKIGIPGPTGPPGEPGIRGSPGPEGTQGSPGQRGRPGK
KGEKGQHGFPGEIGATGEPGKPGEIGPKGSRGTRGPVGHLGAMGSAGKPGIPGYGGHQGP
PGALGPPGPKGEKGYPGEDSSMLGPPGPRGEPGPTGERGERGEPGDIGYMGHTGLPGLRG
AIGQQGPPGEPGEQGEQGPKGERGSQGPTGKKGSSGQPGKPGMPSEPGPVGQKGVAGNPG
PEGVPGNPGKSGLPGQQGLPGTRGSPGIAGLAGYPGSHGPKGSPGAPGSPGLPGLKGEQG
LRGHPGKQGRRGLPGTQGDQGPPGLPGQKGFAGEFGDQGLMGFQGFPGPKGPEGDHGLIG
ILGPKGPIGEIGNTGPVGYEGIVGPAGKPGYRGEKGSRGEIGPQGPRGRPGLPGPPGAPG
PRKQIDMSATIQALLESNAALEMENYQNTEVTFLDHSAKIFKTLHYLSNLLHSIKNPLGT
RDNPARICRDLLNCERKVSNGKYWIDPNIGCPSDAIEVFCNFTAGGQTCLSPVSVTKLEF
GIEKVQMNFLHLLSSEATHTITVHCLNTPVWKTNELHDQKSSLIFKGWNGDIFEANTLIE
PKVIMDGCMIQDGNWHKTQFFFHTQDTNQLPVVQVHPFSHLNQGQQRYIESGLVCFL
NT seq
4674 nt
NT seq
+upstream
nt +downstream
nt
atgcatttaggagctcaaaggacaaggagtggaagcatctctcccacgacacaaacgaag
acccttctcctacttacactatgtatagctgtgggttgtgtgcaaagacagcaagaaggc
atagatgttctccatcatttaggcctaagtgggcaaactatgcatcatccaacaacaggg
cctttgatacgtctgtcacatgcttcatcacctcaagggattcacctaactgaatttgga
gttcttttatccattcagacagccattgaagttcccatctctcaagtgggggtatcagct
ttaggttccaattttgccatgctaattagcttacgctcttacaaagtaaacaatgccttt
cttttcagtattaggaataaaaacagactgcagtttggtatacagctgctaccaaggaag
ataattgtgcacactggaggcaagcactctgtatactttgattatcgggttcatgatgag
caatggcacacgtttgctattgatgttacagaaaaatcagtctccctatatactcagtgt
ggaaggaaacacttcaggaaggagattctttccaaagtacagtttgattcacatagctta
tttaccttaggaagaatgaacttccagtcagtccactttgaaggtgtgttatgtcagttg
gatattatcccctctgcacaaaccttgacaaactattgtaaatatgtgaaactacaatgt
cgccaagctgatacatactggtttcatacaatttctccaagcgaggaaaactcaagcaag
ctgttggatgaagtaacccaaccattaagtaaaagaaaaggtacattaaatcttcacgtc
agtaagtcatcattggtcaaagatcctcaagaattgatgcagacaacttcttccttgact
cctctttacttagggaatattactgccttgtcagaaccaaatgaccagcaaattgtgaat
gtctccaaaaaacaccaacattatgtcagcaaaaggaaaggggattccttgcctctcaca
aaattaactttaaattatacagactctatgacagaaaatatgaaaagaaaaatgaattcc
agtttgctgttttccataaagcagcctaatgccaaacatatgatgaaaaatacatcaaag
ccatatttatatgaactaatggatatgcatccgtttttaaatacaacattgcatgaagat
tttcattccgaacctttaattaaccggtttagctcatgggatgagcatacagttcagact
gatgagatttataatgctgaaggcaattacgaatttgatgctgattattatgattatgat
tatgaagaatgggagagactacttgacatggaaaatcttaaggggcctaaaggagatcct
ggacaggtgggacccccaggtcctccaggattacctggcccagcaggaaagcgaggccca
agaggtattccaggtccacatggaaatcctgggctaccaggtttgcctggttcaaagggc
cacaaaggtgatccagggttttccccaggaaaagcaaagcgtggagaaaaaggtgatgca
ggactaacagggttacctggcatagagggcctcaaaggtagaaagggtttaatgggatat
ccaggaccaagagggatacaaggggagcaaggaattctaggaatgactggcaaccctggg
gctcttggttaccctggcaggcagggcttagcaggacccgaaggtaacccaggccctaaa
ggtgtaagaggtttcattggacctccgggagtggctgggaatcctggacctgagggagaa
agaggtattccaggtttacctggaaaaagaggtataaaggggagaataggattgccaggt
gattttggaaacagaggccctcctggtcctgacggaagccctggaaatgttggtggagtt
ggtcctcctggatttcctggacttagaggagaagaaggacctgtcgggccaagtggagta
actggaccaagggggaaacctggaaggaaaggttttgcaggtgaaccaggattagaaggc
ctgaagggagaaacaggagaccaaggagttcttgggaaaaccggtgaaacaggacctatt
ggctcacctggtgaaattggattatctgggggacctggtgagaagggagacagaggtaat
ccaggcccagtgggccctcctggagaaaaaggtgtcatgggatacccaggtccaccaggt
ggccctggtgatgtagggccacagggactacctggcccaacaggagcacgaggacctcct
ggaccacagggttctaaaggtcaaagaggaccacgaggtcaagatggtcctcttggagag
caagggacagaaggtattaagggagaagttggtgactctgggaaaaaaggcattcatgga
ctcattggaaaagctggaatccctggagaaagaggcagtccaggaccaccaggtttgcct
ggccttcctggaagtataggagatagagggccttcaggtgaaccaggaccgaggggagaa
caaggtggtgctggtcctgtaggtgaagctggctctgagggatcacctggcccagaggga
gagcctggaccacaaggagaaccaggcacaaagggagattatggaccagttggcaatatt
ggagcagcaggtgaacaaggtataagaggtattcgaggaccaccaggagaagatggtgtt
caaggaaaagatggattaaagggcagtttaggagaccctggccttcctggagaagatggt
gaaaaaggaaaaattggaattcccgggcctactggccctccaggtgaacctggaatcaga
ggcagtccaggtcctgagggaactcaaggaagtccaggtcaaaggggtcgtccaggaaag
aagggagaaaagggtcagcatggcttccctggagaaatcggagctacaggtgaacctggc
aagcctggagaaattggtccaaagggttcaagaggaactagaggacccgtgggacattta
ggagcaatgggatcagcaggaaaaccaggaattccaggttatgggggtcaccaaggtccg
ccaggagcacttggccctccaggacccaaaggagagaaaggttaccctggggaagacagc
tcaatgctaggaccacctgggccccgaggtgaaccaggtcctactggtgaacggggagaa
agaggagaacctggtgacataggttacatgggtcacacaggacttccaggactgagaggt
gctattggacaacaaggaccaccaggtgagccaggtgaacagggtgagcaaggaccaaaa
ggagaaagaggatctcaaggtcctactggaaaaaaaggatcaagtggtcagcctgggaag
cctggaatgcctagtgaacctggtcctgttggtcagaaaggcgtagctggcaaccctgga
ccagaaggtgtacctggcaatcctggaaaatcagggttacctggacagcagggccttcct
ggtactagaggaagcccaggaatagctggactagcaggatatcctgggagtcatggaccg
aaaggttcaccaggtgcgccaggaagccccggcctcccaggactaaagggtgaacaaggg
cttcggggacatccaggaaagcaaggtagaagaggacttccagggacacaaggtgatcaa
ggccccccaggacttcctggccagaaaggattcgccggagaatttggagatcaaggtttg
atgggatttcaaggatttccaggtcccaagggccctgaaggtgatcatggtttaattgga
attttgggaccaaaaggcccaataggtgaaataggaaacacaggccctgtaggttacgaa
ggtattgttggcccagctggcaaacctggatacaggggagaaaagggatccagaggtgaa
attggccctcaaggaccccgcggtcgtccaggtctgcctggtccaccaggagcacctgga
ccaagaaaacaaatagacatgagtgccactattcaagccttgcttgaatcaaatgctgcc
ttagaaatggagaattatcagaacactgaagtgacattcttggatcacagtgccaaaata
ttcaaaacactacattatctgagcaatttactccatagcatcaaaaacccgttgggaacc
cgagataatccagcacgtatctgcagagatttgctcaactgtgaacgtaaagtgtctaat
ggaaaatattggattgatccaaatattgggtgtccttcagatgccattgaggttttctgc
aacttcactgctggtggccagacatgtttatctcctgtatctgtcacaaagttggaattt
ggcattgaaaaagtacagatgaacttccttcatttacttagttcagaagcaacccatact
attacagttcattgcctgaatacccctgtgtggaaaactaatgaactacatgatcagaaa
tcttctctgatcttcaaaggatggaatggtgatatttttgaagcaaacacgctgattgaa
ccaaaagttataatggatggatgcatgattcaagatggcaactggcacaaaacccaattt
tttttccacactcaagacaccaatcaactaccggttgttcaggttcatccattttctcat
ctcaatcagggacaacagcgatacatagaaagtggcttggtgtgctttctctag
DBGET
integrated database retrieval system
