Notechis scutatus (mainland tiger snake): 113416596
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Entry
113416596 CDS
T09026
Symbol
COL4A5
Name
(RefSeq) collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
nss
Notechis scutatus (mainland tiger snake)
Pathway
nss04510
Focal adhesion
nss04512
ECM-receptor interaction
nss04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nss00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113416596 (COL4A5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
113416596 (COL4A5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
113416596 (COL4A5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nss04147
]
113416596 (COL4A5)
00536 Glycosaminoglycan binding proteins [BR:
nss00536
]
113416596 (COL4A5)
Exosome [BR:
nss04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
113416596 (COL4A5)
Glycosaminoglycan binding proteins [BR:
nss00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113416596 (COL4A5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
113416596
NCBI-ProteinID:
XP_026530393
UniProt:
A0A6J1UPJ0
LinkDB
All DBs
Position
Unknown
AA seq
1656 aa
AA seq
DB search
MKLSPGARRLLLLLALGLGAWDAQAAACHGCSSSTKCDCSGHKGDKGDRGFPGLPGQPGL
PGFPGPEGPAGSRGEKGDDGFAGPTGPKGIRGPPGLPGFPGTPGLPGLPGQDGPPGLQGI
PGCNGTKGERGFPGSAGFPGLAGPPGPPGFPGMKGDRGDTITSPLPGQKGDPGFPGPPGI
PGSAGLPGVEGPVGPPGPPGLTGPPGPPGPPGSKGNMGLNFQGPKGEKGEQGLQGPPGPP
GQIGEQTRINDVEFQKGDQGAPGDPGPPGSPGFPGPPGPPGGGKGEKGEQGEPGKRGKPG
KDGDIGLPGLSGFPGEPGTPGIPGRDGDKGQKGDAGLPGPPGQVIPRPDTGITVGPKGSK
GLAGYPGNKGDRGYPGPVGPPGLPGTPGLPSVGPSGPPGLPGERGQKGDQGLPGIAIPGQ
PGIDGQPGLRGPPGPPGPPGSTIPPVDRLCERGPPGPQGIGGEQGFPGERGQKGDKGDTC
FNCIGSGIPGPPGEKGFPGLPGDPGAPGLPGLKGDKGVSGVFGAIGPQGPPGLPGSPGRP
GTKGDPGEVIGFPRMKGEKGNPGFPGPPGLPGLDASPGKDGLPGRPGPKGEPGSIAFKGD
RGLTGEPGLPGPFGERGPPGPPGFGPQGPPGEKGLQGVPGRPGSPGAPGPKGEPAQSVPE
KGPPGLPGPPGRNGEDGFPGEPGQLGPPGLPGIPGQKGEPGFPGIGLPGPPGPKGLPGLS
GEPGLPGNSGRPGADGAPGLPGEKGQKILHASYLKIAGNHGDPGPRGQPGLVGPPGIPGS
GVQGPPGPPGPPGPAGSPGQPGFQGIPGEKGDPGQPGFDVPGPPGDRGNPGFPGPPGLPG
GPGSPGSPGQDGAPGTPGNKGDMGVMGAPGPLGTPGSPGRNGFPGSKGNDGLPGQPGQPG
LAGQKGSKGEPGLPGAPGKIDIDQLGSKGEKGEPGEKGNPGLTGQKGYPGLPGDSGPTGS
VGQPGAPGLPGPKGDTGIPGGPGPTGPPGLKGANGEMGLPGTPGIKGSQGVPGRLGQPGS
PGSPGLKGDKGDPGISGIGIPGPPGPKGESGLPGYPGPPGPKGSFGNPGLPGSPGIPGGK
GEPGLPGFQGTPGIPGTKGLDGSPGSPGVPGSPGPPGELGRPGSPGLLGEKGQPGRDGIP
GPSGQKGEPGQPGFGLPGPQGLPGLAGQKGDSGFSGPPGPPGPSGLKGEMGAKGFPGAPG
LEGPPGLPGPPSEGPKGSPGPSGIPGRPGAAGHPGLPGPEGPRGPPGIGGVKGEKGNPGQ
IGQPGLPGLKGDQGAPGQMGEPGHPGLNGMKGDSGVPGAPGFPGMKGPPGPLGPSGPGGD
PGPPGSPGAPGIPGSAGQTIVVKGDQGPPGPSGQPGMKGLPGLPGPPGLPGSIGLPGDIG
RDGLPGFDGPAGRKGERGLSGQPGLRGSQGPPGPDGLQGPPGLPGTGSVAHGFLITRHSQ
TTDAPFCPPGTSQIYDGFSLLYVQGNERAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNF
ASRNDYSYWLSTPEPMPMSMEPLTGKNIQPFISRCTVCEAPAMVIAVHSQTIQIPSCPQG
WNSLWIGYSFMMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWL
ATVEIAEMFNKPQSETLKAGDLRARISRCQVCMKRT
NT seq
4971 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgagcccgggcgcccgtcgcctcctcttgctgctcgccctgggactcggcgct
tgggacgcccaggctgcggcgtgccacggctgttcctccagcacgaaatgtgactgtagt
ggacacaaaggagacaagggcgatcgaggtttcccaggactgcccggccagcccggtttg
cctggcttccctggcccagaaggaccagctggatctcgcggcgagaagggtgatgatgga
tttgcagggcctacaggacccaaaggcatccgaggtcctccaggcttaccaggttttcca
ggaacaccggggcttcctggactcccaggtcaggatggacctcctggactccaaggtatc
ccaggatgcaacggaacaaagggagaacgtggttttccaggcagcgcgggtttcccaggt
ttggctggacctcccggcccacctggttttccaggaatgaaaggtgatcgtggagatacc
atcacctctcccctccctggacagaagggtgacccaggatttccaggtccacctggaatt
ccaggctctgctggtctccctggtgtagaaggaccagttggtcctcctggacccccaggt
ttgacgggtcctcctggtcccccaggaccgccgggttctaagggcaatatgggcttgaat
ttccaaggacccaaaggagaaaaaggtgaacagggacttcaaggacctccagggccacca
ggacagatcggcgaacagacaagaatcaatgatgtagaatttcaaaaaggagatcagggt
gctccaggtgacccgggccccccaggatccccgggcttccccgggcctcctgggcctcct
ggcggtggaaaaggtgaaaaaggtgagcaaggagaaccaggcaaaagagggaagccagga
aaagatggggacattggattgccaggtttgtctggttttcctggtgaacctggcacgcct
ggcatcccgggaagagatggagacaagggtcaaaaaggagatgctggtttacctggccca
cctggacaagtgattccgaggccggacaccggtataacagtgggaccaaagggtagcaaa
ggattagcaggatatcccgggaacaaaggagatcgtggttatcctggccctgtgggccct
cctggtttaccaggcaccccaggacttccaagcgtaggtccttcaggtccacctggatta
cccggagaaagaggacagaaaggggatcagggccttcctgggattgctataccagggcag
ccagggattgatggacaaccaggactccgaggaccaccagggcccccaggaccaccagga
tcaaccatcccacctgttgatcggctttgtgagcgaggacctcctggccctcaaggaatt
ggtggagaacaaggatttccaggggaaagaggccagaaaggtgacaagggagacacctgt
tttaactgcataggaagcggcatcccaggccccccaggggaaaaaggctttcctgggctc
cctggcgatccaggggctccaggtcttcctgggctaaaaggtgacaaaggcgtttctggc
gtatttggagctattgggcctcaaggtcctcctggacttccaggttctcctggacgtcct
ggcactaaaggtgatccgggtgaagtgattggtttccctcggatgaaaggtgaaaagggt
aatccaggtttcccggggcccccagggctgcccggtttagatgcttctcctggcaaagat
ggactcccgggtcgtcctggacccaagggcgagccaggtagcattgctttcaaaggagac
cgagggcttactggagagccaggtcttcctggaccttttggagagcgagggcctccagga
cctcctggatttggaccacaaggacctccaggagaaaaggggcttcagggcgtccctggc
cgcccaggttcaccgggtgctccagggcccaaaggcgaacctgcccaatctgttcctgaa
aaaggacctccaggacttccaggacccccaggcagaaatggggaagatggttttccagga
gaacctggtcagcttggaccacctgggttgccaggaatccccgggcaaaaaggtgaaccc
ggttttcctggcattggactcccaggcccaccagggcccaaaggtttgcctggtttatca
ggtgaacctggacttccaggaaactctggaagaccgggagctgatggagcccctggattg
cctggagagaaaggacagaagattttgcatgcttcctatctcaaaatagcaggaaaccat
ggtgacccaggaccacgtggccagcctgggctggttggacctccagggattccaggaagt
ggtgtccaaggaccacctggtccacctggtcctccaggaccagcaggatcaccaggccaa
ccaggatttcaaggcatccctggagagaaaggagatcctgggcaaccaggatttgatgtt
cccggtcctccaggtgataggggcaacccaggttttcctggaccacctgggcttccaggt
ggaccgggttcccctggttctccagggcaagatggagctccaggcacaccaggaaacaaa
ggcgatatgggagtgatgggggcacctggtcctctgggaacacctggatcacctggcaga
aatggattccctgggtccaaaggcaatgatggtttaccaggacaaccaggtcaaccagga
cttgctggacagaaaggcagcaaaggagaacctggcttgccgggagctcccggaaaaatt
gatattgaccaactgggctccaaaggagaaaagggggagcccggagagaagggtaatcct
ggtttgactggtcagaagggttacccaggcctcccaggtgactcagggcccactggatca
gttgggcagccaggtgcacctggattgccaggtcccaaaggagatactggaattccgggg
gggcctggaccaactgggcccccaggattaaaaggtgccaatggcgagatgggactccca
ggtacccccggcataaaaggttcacaaggtgtcccagggcgccttggccagcctggctct
cctggatcgccaggactgaagggagacaagggtgatcctggtatttcaggcattggtatt
ccgggtccccctggccccaagggtgaaagtggactgcctggctaccctggccctccaggc
cctaaaggatcttttggaaatccggggttgcctggatcgccgggtattccaggaggaaaa
ggtgaacctggccttcctggattccaagggacaccaggcattccaggaacaaaaggtctt
gatggatctccaggaagcccaggtgttccagggtcacctggacctccaggtgaacttggt
cgtcctggctctccaggccttctgggggaaaaaggacaacctgggcgagatggcatccct
ggaccatcaggacagaaaggtgaaccaggtcaaccaggatttggacttcccggacctcaa
ggcctcccaggactcgcaggtcaaaagggagattctggcttctctggacccccagggcct
ccaggaccctctggtttaaaaggagaaatgggtgccaagggatttcctggcgctccaggc
ttagaaggtcctccaggacttcctggaccaccatcagaagggcctaagggtagccctggg
ccatcaggcataccgggacggccaggtgccgcaggtcatccaggtcttcctgggcctgaa
ggaccccgtggaccacccgggattgggggagtgaaaggagaaaaaggaaaccccggccag
ataggtcagcccggactgcccggactgaagggagaccagggagcacctggacagatgggt
gaacctggacatccaggcctgaacgggatgaagggagactcaggtgttccaggagcacca
ggatttccaggtatgaagggacctcctggacctttgggaccgtctggccctggaggagac
cctggaccccctggctccccaggtgctccagggatacctggttcagctggacaaacaatt
gtggtgaaaggtgatcaagggccacctggtccttcagggcagcctggaatgaaaggtctg
cctggactcccagggcctccaggtttgccaggttcaattggccttcctggtgacattgga
cgggatggtcttcctggttttgatggtccagccggacgtaaaggggaaagaggactctca
ggccagccaggtcttcgtggttcacagggacctcctggccctgatggattgcaaggtccc
ccaggactccccggaacaggttcagttgcccatggattccttataactcgtcacagccaa
accaccgatgcccccttctgcccaccaggaaccagccagatctatgatggattttccctt
ctctatgtgcaaggaaatgagagagctcatgggcaggatctgggcactgctggcagctgt
ctccgccgtttcagcaccatgccgttcatgttttgcaacatcaacaacgtctgtaacttt
gcatctaggaacgattactcttattggctttccacccctgagccgatgccaatgagcatg
gagccactaactggaaagaatatacaaccttttattagccgttgcacagtctgtgaagct
cccgcgatggtcatagcagtccacagccagaccatccagatcccgtcgtgtccacagggc
tggaactcgctctggattggatattcgttcatgatgcacaccagtgctggggcagaagga
tctggacaggccttggcttctcctggctcgtgtcttgaggaattccgctcagctcccttc
attgagtgccacggccgagggacctgcaactattatgccaattcatatagtttttggctg
gcaactgtggaaatagcagaaatgtttaataaacctcagtcggagactcttaaagctggt
gaccttcgggcccgtattagccgatgccaagtttgcatgaagaggacgtaa
DBGET
integrated database retrieval system
