Notechis scutatus (mainland tiger snake): 113417262
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Entry
113417262 CDS
T09026
Symbol
SDC1
Name
(RefSeq) syndecan-1
KO
K06257
syndecan 1
Organism
nss
Notechis scutatus (mainland tiger snake)
Pathway
nss04512
ECM-receptor interaction
nss04514
Cell adhesion molecules
nss04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nss00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113417262 (SDC1)
04514 Cell adhesion molecules
113417262 (SDC1)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
113417262 (SDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
nss04131
]
113417262 (SDC1)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
nss04090
]
113417262 (SDC1)
00535 Proteoglycans [BR:
nss00535
]
113417262 (SDC1)
Membrane trafficking [BR:
nss04131
]
Exocytosis
Calcium ion-dependent exocytosis
Acrosomal exocytosis proteins
113417262 (SDC1)
CD molecules [BR:
nss04090
]
Proteins
113417262 (SDC1)
Proteoglycans [BR:
nss00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
113417262 (SDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Syndecan
Motif
Other DBs
NCBI-GeneID:
113417262
NCBI-ProteinID:
XP_026531350
Ensembl:
ENSNSUG00000003733
UniProt:
A0A6J1ULZ7
LinkDB
All DBs
Position
Unknown
AA seq
327 aa
AA seq
DB search
MRVSAIAGLSALVFCFQAVFAQPMDISVPPEDQDSSGDDDDSFSGLSSGAGSSMEDEVIA
YKVPLQGSTNTSLMPEVSTSLRDNQTKVQVTDSPAEDYSRAPVSTASIPGFPDTALPSKE
PPVTLEEFDSVTEPDTTKPAVLTTSVPIAHHVSTARITTSHTASTVKFIDIPDLSNIDET
HSFGIGPESEKNLNSTLPTIVSSTALMDNSPLPENEIFPEYSSGDQGDFIFSTHEENQMN
AKDLETENRRADTDTATDAKSEGLMDRKEVLGGVIAGGLVGLLFAGFLVAFMLYRMKKKD
EGSYSLDEPKQSNGGYQKPHKQEEFYA
NT seq
984 nt
NT seq
+upstream
nt +downstream
nt
atgagggtcagcgcgatagcggggctgagcgccttggtcttttgcttccaagccgtcttc
gcgcaaccaatggacatcagtgtaccccctgaagaccaggattcatctggagatgatgat
gattcattttctggtttatcatcgggtgcaggttcttcgatggaggatgaagtgattgcc
tacaaggttccattacaaggaagcacaaatacttccctgatgcctgaagtttctaccagc
ttgagagataatcaaacaaaggttcaagtaacagatagccctgcggaagattattcaagg
gcacctgtctctacggcaagcatacctgggtttccagatactgctctcccatccaaggaa
ccaccagtaactctggaagagtttgactcggttacggagccagatacaacaaaacctgct
gtgttgacaacaagcgtcccaatagcgcatcatgtttccacagccagaattacaacttct
catactgctagcacagtcaaattcattgatattcctgacctatctaatattgatgaaaca
cactcgtttggcattggcccagaaagtgagaaaaatttgaatagtaccctacccactata
gtgtcgtctactgctctaatggataactctcctctgcctgaaaatgaaatcttcccagaa
tatagttctggtgatcagggagattttatattttcaacacatgaggaaaatcaaatgaat
gcaaaggaccttgaaacagaaaataggagggctgatacagatacagccacggatgcaaaa
tctgaaggattaatggacaggaaagaagtactaggaggagtcatcgccggtggactcgta
ggcttgctatttgctggattcctagttgcattcatgctctatagaatgaagaaaaaagat
gaaggaagttattcattggatgagccaaagcaatcgaacggaggctatcaaaaaccacac
aagcaagaagaattctatgcatga
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