Notechis scutatus (mainland tiger snake): 113417262
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Entry
113417262 CDS
T09026
Symbol
SDC1
Name
(RefSeq) syndecan-1
KO
K06257
syndecan 1
Organism
nss
Notechis scutatus (mainland tiger snake)
Pathway
nss04512
ECM-receptor interaction
nss04514
Cell adhesion molecule (CAM) interaction
nss04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nss00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113417262 (SDC1)
04514 Cell adhesion molecule (CAM) interaction
113417262 (SDC1)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
113417262 (SDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
nss04131
]
113417262 (SDC1)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
nss04090
]
113417262 (SDC1)
00535 Proteoglycans [BR:
nss00535
]
113417262 (SDC1)
Membrane trafficking [BR:
nss04131
]
Exocytosis
Calcium ion-dependent exocytosis
Acrosomal exocytosis proteins
113417262 (SDC1)
CD molecules [BR:
nss04090
]
Proteins
113417262 (SDC1)
Proteoglycans [BR:
nss00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
113417262 (SDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Syndecan
Motif
Other DBs
NCBI-GeneID:
113417262
NCBI-ProteinID:
XP_026531350
Ensembl:
ENSNSUG00000003733
UniProt:
A0A6J1ULZ7
LinkDB
All DBs
Position
Unknown
AA seq
327 aa
AA seq
DB search
MRVSAIAGLSALVFCFQAVFAQPMDISVPPEDQDSSGDDDDSFSGLSSGAGSSMEDEVIA
YKVPLQGSTNTSLMPEVSTSLRDNQTKVQVTDSPAEDYSRAPVSTASIPGFPDTALPSKE
PPVTLEEFDSVTEPDTTKPAVLTTSVPIAHHVSTARITTSHTASTVKFIDIPDLSNIDET
HSFGIGPESEKNLNSTLPTIVSSTALMDNSPLPENEIFPEYSSGDQGDFIFSTHEENQMN
AKDLETENRRADTDTATDAKSEGLMDRKEVLGGVIAGGLVGLLFAGFLVAFMLYRMKKKD
EGSYSLDEPKQSNGGYQKPHKQEEFYA
NT seq
984 nt
NT seq
+upstream
nt +downstream
nt
atgagggtcagcgcgatagcggggctgagcgccttggtcttttgcttccaagccgtcttc
gcgcaaccaatggacatcagtgtaccccctgaagaccaggattcatctggagatgatgat
gattcattttctggtttatcatcgggtgcaggttcttcgatggaggatgaagtgattgcc
tacaaggttccattacaaggaagcacaaatacttccctgatgcctgaagtttctaccagc
ttgagagataatcaaacaaaggttcaagtaacagatagccctgcggaagattattcaagg
gcacctgtctctacggcaagcatacctgggtttccagatactgctctcccatccaaggaa
ccaccagtaactctggaagagtttgactcggttacggagccagatacaacaaaacctgct
gtgttgacaacaagcgtcccaatagcgcatcatgtttccacagccagaattacaacttct
catactgctagcacagtcaaattcattgatattcctgacctatctaatattgatgaaaca
cactcgtttggcattggcccagaaagtgagaaaaatttgaatagtaccctacccactata
gtgtcgtctactgctctaatggataactctcctctgcctgaaaatgaaatcttcccagaa
tatagttctggtgatcagggagattttatattttcaacacatgaggaaaatcaaatgaat
gcaaaggaccttgaaacagaaaataggagggctgatacagatacagccacggatgcaaaa
tctgaaggattaatggacaggaaagaagtactaggaggagtcatcgccggtggactcgta
ggcttgctatttgctggattcctagttgcattcatgctctatagaatgaagaaaaaagat
gaaggaagttattcattggatgagccaaagcaatcgaacggaggctatcaaaaaccacac
aagcaagaagaattctatgcatga
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