Notechis scutatus (mainland tiger snake): 113419216
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Entry
113419216 CDS
T09026
Symbol
TOPBP1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
nss
Notechis scutatus (mainland tiger snake)
Pathway
nss03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nss00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
113419216 (TOPBP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nss03032
]
113419216 (TOPBP1)
03400 DNA repair and recombination proteins [BR:
nss03400
]
113419216 (TOPBP1)
DNA replication proteins [BR:
nss03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
113419216 (TOPBP1)
DNA repair and recombination proteins [BR:
nss03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
113419216 (TOPBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
113419216
NCBI-ProteinID:
XP_026534292
Ensembl:
ENSNSUG00000007313
UniProt:
A0A6J1UTH9
LinkDB
All DBs
Position
Unknown
AA seq
1503 aa
AA seq
DB search
MKGSKEPYFVKFIKTVESSECFLQALESIKEFQSEECLQILDKEAALRIQENDKSLYICD
QFSGIVFNHLQKLGCRIVGPQVVIYCMQNQRCVPKADHPVFNMTMADVTVSCTSLPKETR
EEVHEYVQLMGGRVYRDLNVLVTHLIAGEVGSKKYLVAANLKKPILLPTWIKTLWCKSQR
RITRYTDINMGEFLCPPFLGCTICVTGLSSMDRQEVQRLTTENGGQYTGQLKMNECTHLI
VQEPKGQKYECAKRWNVHCISMQWFFDSIEKGFCQDESMYLIVPSTKKDSTPSTSTPTGQ
ASKPDSQTLSDVSHISNINLSDINETSCSSVLNSRLEPSPDDLNNLNISSLQTREDLLDG
CRIYLCGVTARKVDKMKTLINSGGAVRFNQLNEDVTHVIVGDCDDELKQFLKKTERRPHV
VTVQWLLECFRKGYLIPEEQYAPASCQEVNTPSSEPPFISNKNNMLKKEHVNTVAAADTD
EDLLSQYVTHDSKVVHFDDYSETDHTVFKNGKEVTVSSLAESSSVGKGALFSGRKFLILG
FGKEDESCIRALIEENAGKVLFQENKIIADYAVVPLLGNKVISTVENVVTNTWLVMCIEQ
QTLIDPQSSPLFSPVPMKEGAIPLQHFVLSFSQFSGAERESLICLASQLGARVQEFFVRR
ANPKKGMLVSTHLVLKEPDGSKYEAAKKWNLPAITMAWLLESARMGKKADENKFLIENID
NKGKQKNLTNSSEEMETSIASTNTPDYPSNVLGSGKITTVTPLDVNRFQSKAFQSVISQH
IGKNPSPPIGSKVVQKEPSLHLDTPSKFLSKDKLFKPSFDVKDALAVLETPGGPNQENTN
LSTPLSEVIGRNLKLALANSTRQTVAITASPQLKTPCWQREEESKPLADVVICVSKKLSK
KQSELNAIAASLGADYRWCFDETVTHLIYQGRQYDNNREYKSAKERGIYIVSEHWLLESA
QEYKRLAESLYPHTYNPKMSLNISGVEVDRFSRRLDVAGKEGKGDKNNSVNDNDTKKVII
DQINEVEQKEHEPKGVLTQTLEMRENFQKQLQEIMTATSLAKLQGQRNSRNGFENSPTTP
DGPRSARNGRSRILEALRQSHHGATDVNTEPSQNEQIIWDDPTAREERARLVSNLQWPNS
PSQYLEQIQTTAVLPGELSLRKFLSDTEIIEMGINDSTKMDSVEVASLLIRNPEMPIKED
NLIPTPLAPAIAFPLANPPVASQPKGDLCSIMVTKIDQRDNEEPTIMHRFQLSSLNPQER
INYYQLIEELGGVVLEKQCFDLSCTHTIVGQPLRNEKFLASMAAGKWVLHRSYLEACRAA
HSFVKEEDYEWGSTSILSVLTGINIVQKKLAVAAMRWRKTIQRRREQNSSAEGAFGGWRV
ILNVDPAKESGFKRLLESGGAKVLPAYSPPIFREVTHFFADLNKLKPEDVRINTREAAAQ
GVNCLKPEYIADYLIQEPSPSMENYHLPEAAAYLQNSKTLGIGLSQKRKAAEEKHTAKRS
RIH
NT seq
4512 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggtagcaaggagccatattttgtgaagtttataaaaactgtggaaagttcagag
tgttttcttcaagcccttgagtccatcaaagaatttcagtcagaagaatgtcttcagatt
cttgataaagaagctgcacttagaatacaagagaatgacaaatccctttatatatgcgat
cagtttagtggcattgtttttaatcatcttcaaaagcttggttgtaggattgtggggcca
caggtagttatctattgtatgcagaatcagcgatgtgttccaaaggctgaccatccagta
tttaatatgacaatggctgatgtaacagtatcttgtacaagtcttccaaaggaaacaagg
gaggaagtccatgaatatgtacagttgatgggtggccgtgtatacagagatcttaatgtg
ttagtaacccaccttatagctggagaagttggaagcaagaaatacttagttgctgctaat
ttaaaaaaacccattttgcttcccacttggataaaaacactgtggtgtaaatcacagcgc
aggatcactagatacacagatataaatatgggagagtttctgtgtcctccatttcttggc
tgtacaatctgtgtaactggtttaagcagcatggatagacaagaagtccagcgtctcacc
actgagaatggtggtcaatatacagggcaactgaagatgaatgaatgtacccatcttatt
gttcaagaaccaaaaggccagaaatatgaatgtgcaaaaaggtggaatgttcattgtata
tccatgcagtggttttttgacagcattgaaaagggattttgccaggatgaatcaatgtat
ttgatagttcctagcacaaagaaagatagcacaccgagcacttcaactcctacaggtcaa
gctagcaagccagacagtcaaacactttcggatgttagtcatatttcaaatatcaactta
agtgacattaatgaaacatcatgtagttctgttttgaatagcagactggagccttcgcct
gatgatctgaacaacttgaatattagttctttgcaaacacgtgaggatttactggatgga
tgccgaatttatctttgtggcgttactgccagaaaagtagataaaatgaaaacgctgatt
aattctggtggtgcagttcgttttaatcaactaaatgaagatgtaacacatgttattgtg
ggggactgtgatgatgaattaaaacaatttttgaagaaaacagaacggaggccacatgtt
gtgacagtacaatggcttttggaatgctttagaaaaggttatttaatacctgaagagcaa
tatgcccctgcaagttgtcaagaagtgaatactccatcttctgagccaccttttatctcc
aataaaaataacatgttgaagaaagaacatgtgaatactgtggcagctgcagatactgat
gaagatttgctatctcaatatgttactcatgattccaaagtagttcattttgatgactac
agtgaaactgatcacactgtatttaaaaatggaaaagaagtcacagttagttccttggca
gagtcttcttcagttggtaaaggagccttattcagtggaaggaagtttctcattcttggt
tttggcaaagaagatgaatcttgcataagagctctgattgaagagaatgctgggaaggtt
ctgttccaggaaaataaaataattgctgattatgctgtggttcctcttctgggaaacaag
gtcatatcaactgtagaaaatgtggttacaaacacatggctggtgatgtgtatagaacaa
cagactctgatagatcctcaatcaagtccacttttcagcccagtgccaatgaaggaagga
gccatcccattacagcattttgtgttgtctttcagtcagtttagtggagcagagagagaa
tctttaatatgtttggcaagtcagcttggggcaagagttcaggaattctttgtgagaaga
gccaacccaaagaaaggaatgcttgtcagcactcatctggtgctaaaagagccagatggt
tctaaatatgaagcagcaaagaagtggaatcttcctgccattactatggcttggctattg
gagtctgctaggatgggaaaaaaggctgatgaaaacaaattcctgattgagaatatagac
aacaaaggtaaacaaaagaatcttacaaattcttcagaagaaatggagacaagtattgca
tctacaaatacacctgattatcctagtaatgtccttggaagtggaaagataacaacagtg
acacccctggatgtgaatcgtttccaaagtaaagctttccaaagtgtcatttcacagcat
attggtaaaaatcctagccctccaattggaagcaaggtagtacagaaggaaccctctctg
catctggatacaccatctaaatttttatcgaaagacaagctctttaaaccttcttttgat
gtcaaggatgctttggcagttttggaaactccaggtggtcctaaccaggaaaacacaaat
ctaagtactcctctttcagaagtcataggcaggaacttaaaactagctttggccaacagc
acacgtcaaacagttgctatcactgccagtccacagctaaaaactccatgttggcaaagg
gaagaagaatcaaaacctttagcggatgttgtcatctgcgtcagtaagaagctcagtaaa
aagcagagtgaattgaatgctattgctgcatctcttggagctgattacaggtggtgtttt
gatgaaactgtaacacatttaatctaccagggaaggcagtatgataacaaccgggaatac
aaatctgctaaagaaagaggcatatacattgtttcagagcattggctcttggagagtgca
caagaatacaagcgactagctgaatctctttatcctcatacatataatcctaaaatgagt
ttgaatattagtggtgtggaagttgacaggttctcacgaaggcttgatgttgctggaaaa
gaagggaaaggagacaaaaataattcagtgaatgataatgatacaaaaaaagttattatt
gatcaaataaatgaggttgaacaaaaggagcatgaaccaaaaggagttttaacacagaca
ttggaaatgagggaaaactttcagaagcagctccaagaaattatgactgccacatcatta
gcaaagttgcaaggacaaaggaactctcggaatggttttgagaattctccaacaactcca
gatggaccccgttctgctcgtaatggccgcagtagaattttagaagctttaaggcagtca
catcatggagcaactgatgtcaatactgagccatcccagaatgaacagataatttgggat
gatcctacagcaagagaggagagagcaaggcttgtcagcaacctgcagtggcctaacagt
ccttcacagtatttagaacaaattcaaactactgcagtgctccctggagaactttcactt
agaaagtttttaagtgatacagaaattattgaaatggggattaatgattcaacgaaaatg
gattcagtggaggttgcaagtcttctaattagaaatccagaaatgccaataaaagaagat
aatctgatcccaactccattggctcctgccattgcttttccattggcaaatcctcccgtc
gcttctcagccaaaaggagatttatgttctatcatggtcactaaaattgaccaaagagac
aatgaagaaccaacaataatgcacagatttcagctctcttctcttaatcctcaggaacga
attaattattatcagctaattgaagaacttgggggagtggtgctggagaagcaatgcttt
gatttgagctgcacacatacgattgtgggacagcctctccgcaatgagaaattcttagca
tcaatggcagcaggaaaatgggtgcttcatcgttcctatttggaagcatgcagagcagca
cacagctttgtaaaggaggaagattatgagtggggaagcacctctatacttagtgtactg
actggaatcaatatagttcagaagaagttagcagttgcagcaatgagatggagaaagaca
atacaacgacggagagagcaaaatagctctgctgagggggcatttggtggttggagagtt
attttgaatgttgacccagcgaaggaatcaggcttcaagcgtcttctggaatcaggaggt
gcaaaggtgttacctgcatattctccacctatctttagagaagttactcatttttttgct
gatcttaataaactaaagccagaagatgtgagaattaatacaagagaggctgcagctcaa
ggagtgaattgcctgaagccagaatacattgctgactatctgatacaggaaccatcacct
tcaatggaaaactatcatttaccagaagctgctgcttatcttcagaatagtaaaacactt
ggaattgggttgtctcaaaaacgtaaagctgctgaagaaaagcatacagcaaagaggtcc
agaattcactga
DBGET
integrated database retrieval system
