Notechis scutatus (mainland tiger snake): 113419534
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Entry
113419534 CDS
T09026
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
nss
Notechis scutatus (mainland tiger snake)
Pathway
nss04382
Cornified envelope formation
nss04510
Focal adhesion
nss04512
ECM-receptor interaction
nss04518
Integrin signaling
nss04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nss00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113419534 (COL4A1)
04518 Integrin signaling
113419534 (COL4A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
113419534 (COL4A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
113419534 (COL4A1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
113419534 (COL4A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nss04147
]
113419534 (COL4A1)
00536 Glycosaminoglycan binding proteins [BR:
nss00536
]
113419534 (COL4A1)
Exosome [BR:
nss04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
113419534 (COL4A1)
Glycosaminoglycan binding proteins [BR:
nss00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113419534 (COL4A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
113419534
NCBI-ProteinID:
XP_026534757
UniProt:
A0A6J1UUU4
LinkDB
All DBs
Position
Unknown
AA seq
1639 aa
AA seq
DB search
MGSRLAGPGIALLFAVLLLLLVPGWSEAAGGCSGCGKCDCSGIKGQKGERGLQGLQGLVG
FPGVQGPEGPTGACGTKGDTGEPGLPGTKGTRGPPGLAGYPGNPGLPGIPGGDGPPGPSG
IPGCNGTKGERGPLGPPGLPGLPGNLGPPGPQGIKGDAGEIVGFVPGRFQKGDKGLPGHP
GSPGEPGLQGVSGPTGPPGPPGRQGFPGPPGPPGEKGHMGMNSQGPKGDKGERGVMGPPG
PEGTETYYGEKGTTIIKGDKGDPGEKGEDGFPGSPGQSIKGGKGEPGKPGPRGRPGKDGE
DGEKGERGVPGQPGIHGQPGVFGSKGDKGIAGPPGPPGIVTDEKEETVFGEKGDPGPQGF
PGRKGELGPKGFEGSPGPPGPPGQVIPGPAGFPGERGRKGDQGPPGTSLPGPIGRVGLPG
PRGLPGAPGLPGGTDGSRCERGPAGDPGVQGTPGQSGYTGERGEKGDKGDGCLDCDGAGF
PGPPGPQGLQGEPGNPGPPGAKGDRGLPGFEGIPGVAGPPGVRGLTGIPGPKGEPGEIFY
DSIVKGEQGEPGLPGQSGIPGKEGRPGKDGVPGIPGPKGASGTIGLKGDRGLPGISGLPG
PPGDRGFPGPPGAGSPGPQGDKGESGLSGIPGNPGLPGPKGEAGRVISLPGPPGARGFPG
PDGNPGLQGDKGDPGIPGRPGLPGEKGLAGPPGIGFPGPTGPPGFPGQPGPQGSSGGKGE
PGPHGAPGAAGAKGQKGEAGLGLPGPKGFPGPQGRNGIPGPKGDQGSPGVPGEKGFPGTP
GLPGSQGESGPPGLPGVQGAPGEPKIGSPGPPGTPGQFGPPGPIGPPGIKGERGYPGVPG
LDMPGPKGDKGIPGADGLSGVPGLPGLPGLQGQQGHPGAPGLKGEMGIMGTPGIQGAPGP
RGTPGTPGDKGSIGFPGAAGPKGDSGFKGEKGEAGLPGEPGSMDPVDMENLKGQKGEQGD
KGEKGITGETGTPGISGSPGMPGKVGDRGLPGKAGPKGDSGTPGFQGEPGFPGDKGSIGE
MGLPGLPGEKGFPGLPGEAGQSGFPGIKGEKGLKGSPGLPGIGFPGAPGEKGEQGWPGSS
GVSGDKGEKGIPGISGMPGFPGNKGQPGLPGSPGVPGLPGEKGQKGTPGAGGFPGLKGQP
GDPGPQGPYGPAGEKGEPGYDGIPGPPGSKGDSGLPGRGFPGIPGSKGERGPKGDMGFPG
SPGSPGLPGIKGDIGFVGPEGPTGQPGIPGLPGKIGEGPKGDRGPQGQPGLQGFPGPQGS
PGVAGLPGEKGEKGNPGWPGQPGKTGPKGDLGVQGIPGSPGFPGTSGQKGDMGPPGIPGP
QGLKGSSGFSGSKGVQGDQGFPGTKGLPGPPGPPGPFQLLKGEPGLPGLLGPVGPKGFPG
FPGPKGQQGVTGPEGLTGPPGIPGFDGTPGQKGEQGPVGPPGLRGFPGPPGPEGIPGTMG
PPGSPSVAHGFLVTRHSQTTEEPSCPFGTRLMFYGYSLLYVQGNQRAHGQDLGSAGSCLR
KFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPLTGESIKPFISRNRSYSQGY
KVMHTSAGAEGSGQALASPGSCLEEFRSAPFVECHGKGTCNYYANAYSFWLATIERNEMF
KLHVATVSLAYQEYTEYRS
NT seq
4920 nt
NT seq
+upstream
nt +downstream
nt
atgggtagcaggctggcggggccgggcatcgcgctcctcttcgcggtgctgctgctgctg
ctcgttccgggctggtccgaggcggcggggggttgttctggctgtggaaaatgtgactgc
agtggaataaaggggcaaaaaggtgaaagaggtttgcaaggtttacaaggcttagttgga
tttcctggagtacaaggaccagaagggcctacaggagcctgtggaacaaagggtgatact
ggagaaccaggactaccaggaacaaaaggaactagaggcccccctggtctagcaggctat
cctgggaatcctggccttccgggcatccctggaggagatggcccgcctggtccttctggg
atcccaggatgcaatggaacaaagggagaaagaggtcctctcggcccacctggcttacct
ggcttacctggcaatctcggacctccaggacctcaaggaataaagggagacgcaggagaa
attgttggattcgtgccaggtagattccaaaagggtgacaaaggattacctggacatcct
ggatcaccaggagaacctggacttcaaggtgtttctggccctactggaccacctggacct
cctggaagacaaggttttccaggaccacctggacctccgggtgagaagggtcatatgggc
atgaattcccaaggtccaaaaggggataagggtgagcgtggtgtcatgggcccccctggt
cctgaaggaacagaaacatactatggagagaaagggaccaccatcataaagggagacaaa
ggtgatcctggtgaaaaaggtgaagatggctttccagggtcaccaggccagagcatcaaa
gggggaaaaggtgaacctgggaaacctggtccacggggaaggcctggaaaggatggagag
gatggagagaagggagaacgtggagtacctggtcagccaggaattcatggacaacctggt
gtatttggatctaaaggagacaagggtatagcaggacctcctggacctccaggaattgtt
acagatgaaaaagaagaaacagtgtttggtgaaaagggtgatccaggacctcaagggttt
ccaggaaggaaaggtgaactaggtcccaaaggttttgaaggtagtccagggccaccaggt
cctccagggcaagttattccagggccagctggctttcctggtgaaagagggagaaaaggt
gaccaggggcctcctggaacatctttgcctgggccaataggaagagttggacttccagga
cctcgtggtttacccggggctccaggcctccctggtggaacagatggaagtaggtgtgaa
cgtggtccagctggtgacccaggtgttcaaggcaccccagggcagtcaggctacacagga
gaaagaggagagaaaggtgataaaggtgacggctgcttggactgtgatggagcaggtttt
cctggaccaccagggccccaagggcttcaaggggaaccaggcaatccaggaccaccaggt
gctaaaggtgatagaggccttcctggatttgaaggcattccgggagtggcaggacctcct
ggtgtacgtggtttgacaggaatcccaggaccaaaaggagaacctggagaaatattctat
gactccattgtaaaaggtgaacaaggagaaccaggattacctggacaatcaggtattcct
ggcaaagaaggaaggccaggaaaggatggtgtccctggcatcccaggtcctaaaggagca
tctgggaccattggattaaaaggagaccgtggactcccaggaataagtggtttaccaggg
ccccctggagacagaggtttccctggtcctccaggagctgggagtcctggaccacagggt
gataaaggagaaagcgggctttctggaatccctgggaaccctggacttccaggccccaaa
ggtgaagctggacgtgtcatttccctgcctggtcccccgggggccagaggttttccagga
cctgatggaaatccaggtctccaaggtgacaagggagatccagggatcccaggaagacct
gggctgccaggtgaaaaaggtctggcagggcctccaggaattgggtttcctggccctaca
gggcccccaggctttcctggtcagccaggtccacaaggttcaagcggagggaagggagaa
cctggtccccatggtgcgccaggtgcagctggagccaaaggacagaagggtgaagctgga
ttaggcctcccgggtcctaaagggtttcctggtcctcaaggacgaaatggcattcctgga
ccaaaaggtgaccagggatctcctggtgtgccaggggagaaaggatttcctggcacacct
ggtctgccaggatctcaaggtgaatcgggtcctcctggattaccaggtgtacagggcgct
cctggtgaacccaaaataggctctcctggcccccctggcactccaggacaatttgggcct
ccaggaccaataggaccaccaggaatcaaaggcgagagaggctacccaggtgtccctggg
ctagatatgccaggacctaaaggagacaaagggatcccaggagcagatggtctgtcaggt
gtgccagggttgccaggcttacctggtttacagggacaacaaggacatccaggtgctcca
ggactgaaaggagaaatgggaattatgggtacccctggaattcaaggtgcccctggtcct
agaggaactcctggaaccccaggtgacaaaggtagcataggttttcctggagctgctgga
ccaaaaggtgattcaggttttaaaggtgaaaaaggtgaagctggacttccaggggagcca
ggatcaatggaccctgttgacatggaaaatctgaaaggccaaaaaggagaacaaggagat
aaaggagaaaaaggaataacaggagaaacaggaactccaggaatttctggaagcccagga
atgccaggcaaggttggagatcgtggtttaccaggcaaagcaggaccaaaaggagattca
ggcactccaggattccagggtgaaccaggatttcctggagacaaaggatcaattggcgaa
atgggtttaccagggcttcctggagaaaaggggtttccaggtcttccaggtgaggcaggt
caatcaggatttcctggaattaaaggtgaaaaaggactgaaaggaagccctggacttcct
ggaattggcttccctggagctcctggtgagaagggtgaacaaggatggccgggcagttca
ggtgtatctggagacaaaggtgaaaagggaattccaggtatttcaggcatgcccggattc
ccaggcaacaaagggcagcctggccttccaggttctccaggtgttccaggactgccaggt
gaaaagggacagaaaggaactccaggcgcgggtggttttccaggcttaaaaggacaacca
ggtgaccctggaccacagggtccatatggacctgctggagaaaaaggtgagcctggttat
gatggaatcccaggccctcctggttcaaaaggtgattcaggtcttcccggtagaggattt
cctggaattccaggttcaaaaggagaaagaggtcctaaaggagacatgggatttccaggg
agccctgggagtccaggacttcctggcataaagggagacattggatttgttggcccagaa
ggtcccacaggccaaccaggcattcctgggttaccaggaaagattggagaaggacccaag
ggtgaccggggaccccaagggcaaccggggcttcaagggtttcctgggccccaaggatct
ccaggagttgcaggattaccaggagaaaaaggagaaaaaggaaatccaggttggccaggg
caacctgggaaaactggacccaaaggtgacctgggagttcaaggaatccctggcagtcct
ggttttcctggaacctctggtcagaaaggtgacatgggacctcctggaattccaggtccc
caaggtctaaaaggttcttcgggtttttctggatccaagggagtacaaggtgaccaagga
tttcctggaactaaaggtcttccaggcccaccaggtcctccaggcccttttcaacttctg
aaaggtgaaccaggcctacctggtcttttaggccctgttggccccaaaggatttcctggt
tttccaggaccaaaaggacaacaaggtgtaacaggacctgaaggtttgactggcccccca
ggaataccagggtttgatggcacacctggtcagaaaggagaacagggccctgtgggtcct
ccaggtctgagaggctttcctggtccccctggtcctgaaggcattccagggacgatgggt
ccaccgggcagtccctctgtggctcatggtttccttgtgaccaggcatagccaaaccaca
gaggagccctcctgtccatttgggacaagacttatgttctatggatattctttgctttat
gtacaaggcaatcaacgggcccacggccaggacttgggctctgctggaagctgtctacgt
aaattcagcacaatgcctttcctattctgcaatattaacaatgtctgcaattttgcttca
agaaacgattattcttattggctgtcaacccctgaacccatgccaatgagcatggctcct
ctaacaggagaaagcatcaagcctttcatcagcaggaatagatcgtactcccaaggttat
aaagttatgcacaccagtgcaggggcagaaggttccgggcaagcactggcctctccgggc
tcctgccttgaagagttccgcagtgcaccctttgttgaatgccatggaaaaggcacctgc
aattattacgccaatgcctacagcttctggcttgccacgattgagaggaatgaaatgttc
aagcttcatgtggctactgtttcacttgcttaccaggaatatacagagtataggagctaa
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integrated database retrieval system
