Notechis scutatus (mainland tiger snake): 113419534
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Entry
113419534 CDS
T09026
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
nss
Notechis scutatus (mainland tiger snake)
Pathway
nss04510
Focal adhesion
nss04512
ECM-receptor interaction
nss04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nss00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113419534 (COL4A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
113419534 (COL4A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
113419534 (COL4A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nss04147
]
113419534 (COL4A1)
00536 Glycosaminoglycan binding proteins [BR:
nss00536
]
113419534 (COL4A1)
Exosome [BR:
nss04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
113419534 (COL4A1)
Glycosaminoglycan binding proteins [BR:
nss00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113419534 (COL4A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
113419534
NCBI-ProteinID:
XP_026534757
UniProt:
A0A6J1UUU4
LinkDB
All DBs
Position
Unknown
AA seq
1639 aa
AA seq
DB search
MGSRLAGPGIALLFAVLLLLLVPGWSEAAGGCSGCGKCDCSGIKGQKGERGLQGLQGLVG
FPGVQGPEGPTGACGTKGDTGEPGLPGTKGTRGPPGLAGYPGNPGLPGIPGGDGPPGPSG
IPGCNGTKGERGPLGPPGLPGLPGNLGPPGPQGIKGDAGEIVGFVPGRFQKGDKGLPGHP
GSPGEPGLQGVSGPTGPPGPPGRQGFPGPPGPPGEKGHMGMNSQGPKGDKGERGVMGPPG
PEGTETYYGEKGTTIIKGDKGDPGEKGEDGFPGSPGQSIKGGKGEPGKPGPRGRPGKDGE
DGEKGERGVPGQPGIHGQPGVFGSKGDKGIAGPPGPPGIVTDEKEETVFGEKGDPGPQGF
PGRKGELGPKGFEGSPGPPGPPGQVIPGPAGFPGERGRKGDQGPPGTSLPGPIGRVGLPG
PRGLPGAPGLPGGTDGSRCERGPAGDPGVQGTPGQSGYTGERGEKGDKGDGCLDCDGAGF
PGPPGPQGLQGEPGNPGPPGAKGDRGLPGFEGIPGVAGPPGVRGLTGIPGPKGEPGEIFY
DSIVKGEQGEPGLPGQSGIPGKEGRPGKDGVPGIPGPKGASGTIGLKGDRGLPGISGLPG
PPGDRGFPGPPGAGSPGPQGDKGESGLSGIPGNPGLPGPKGEAGRVISLPGPPGARGFPG
PDGNPGLQGDKGDPGIPGRPGLPGEKGLAGPPGIGFPGPTGPPGFPGQPGPQGSSGGKGE
PGPHGAPGAAGAKGQKGEAGLGLPGPKGFPGPQGRNGIPGPKGDQGSPGVPGEKGFPGTP
GLPGSQGESGPPGLPGVQGAPGEPKIGSPGPPGTPGQFGPPGPIGPPGIKGERGYPGVPG
LDMPGPKGDKGIPGADGLSGVPGLPGLPGLQGQQGHPGAPGLKGEMGIMGTPGIQGAPGP
RGTPGTPGDKGSIGFPGAAGPKGDSGFKGEKGEAGLPGEPGSMDPVDMENLKGQKGEQGD
KGEKGITGETGTPGISGSPGMPGKVGDRGLPGKAGPKGDSGTPGFQGEPGFPGDKGSIGE
MGLPGLPGEKGFPGLPGEAGQSGFPGIKGEKGLKGSPGLPGIGFPGAPGEKGEQGWPGSS
GVSGDKGEKGIPGISGMPGFPGNKGQPGLPGSPGVPGLPGEKGQKGTPGAGGFPGLKGQP
GDPGPQGPYGPAGEKGEPGYDGIPGPPGSKGDSGLPGRGFPGIPGSKGERGPKGDMGFPG
SPGSPGLPGIKGDIGFVGPEGPTGQPGIPGLPGKIGEGPKGDRGPQGQPGLQGFPGPQGS
PGVAGLPGEKGEKGNPGWPGQPGKTGPKGDLGVQGIPGSPGFPGTSGQKGDMGPPGIPGP
QGLKGSSGFSGSKGVQGDQGFPGTKGLPGPPGPPGPFQLLKGEPGLPGLLGPVGPKGFPG
FPGPKGQQGVTGPEGLTGPPGIPGFDGTPGQKGEQGPVGPPGLRGFPGPPGPEGIPGTMG
PPGSPSVAHGFLVTRHSQTTEEPSCPFGTRLMFYGYSLLYVQGNQRAHGQDLGSAGSCLR
KFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPLTGESIKPFISRNRSYSQGY
KVMHTSAGAEGSGQALASPGSCLEEFRSAPFVECHGKGTCNYYANAYSFWLATIERNEMF
KLHVATVSLAYQEYTEYRS
NT seq
4920 nt
NT seq
+upstream
nt +downstream
nt
atgggtagcaggctggcggggccgggcatcgcgctcctcttcgcggtgctgctgctgctg
ctcgttccgggctggtccgaggcggcggggggttgttctggctgtggaaaatgtgactgc
agtggaataaaggggcaaaaaggtgaaagaggtttgcaaggtttacaaggcttagttgga
tttcctggagtacaaggaccagaagggcctacaggagcctgtggaacaaagggtgatact
ggagaaccaggactaccaggaacaaaaggaactagaggcccccctggtctagcaggctat
cctgggaatcctggccttccgggcatccctggaggagatggcccgcctggtccttctggg
atcccaggatgcaatggaacaaagggagaaagaggtcctctcggcccacctggcttacct
ggcttacctggcaatctcggacctccaggacctcaaggaataaagggagacgcaggagaa
attgttggattcgtgccaggtagattccaaaagggtgacaaaggattacctggacatcct
ggatcaccaggagaacctggacttcaaggtgtttctggccctactggaccacctggacct
cctggaagacaaggttttccaggaccacctggacctccgggtgagaagggtcatatgggc
atgaattcccaaggtccaaaaggggataagggtgagcgtggtgtcatgggcccccctggt
cctgaaggaacagaaacatactatggagagaaagggaccaccatcataaagggagacaaa
ggtgatcctggtgaaaaaggtgaagatggctttccagggtcaccaggccagagcatcaaa
gggggaaaaggtgaacctgggaaacctggtccacggggaaggcctggaaaggatggagag
gatggagagaagggagaacgtggagtacctggtcagccaggaattcatggacaacctggt
gtatttggatctaaaggagacaagggtatagcaggacctcctggacctccaggaattgtt
acagatgaaaaagaagaaacagtgtttggtgaaaagggtgatccaggacctcaagggttt
ccaggaaggaaaggtgaactaggtcccaaaggttttgaaggtagtccagggccaccaggt
cctccagggcaagttattccagggccagctggctttcctggtgaaagagggagaaaaggt
gaccaggggcctcctggaacatctttgcctgggccaataggaagagttggacttccagga
cctcgtggtttacccggggctccaggcctccctggtggaacagatggaagtaggtgtgaa
cgtggtccagctggtgacccaggtgttcaaggcaccccagggcagtcaggctacacagga
gaaagaggagagaaaggtgataaaggtgacggctgcttggactgtgatggagcaggtttt
cctggaccaccagggccccaagggcttcaaggggaaccaggcaatccaggaccaccaggt
gctaaaggtgatagaggccttcctggatttgaaggcattccgggagtggcaggacctcct
ggtgtacgtggtttgacaggaatcccaggaccaaaaggagaacctggagaaatattctat
gactccattgtaaaaggtgaacaaggagaaccaggattacctggacaatcaggtattcct
ggcaaagaaggaaggccaggaaaggatggtgtccctggcatcccaggtcctaaaggagca
tctgggaccattggattaaaaggagaccgtggactcccaggaataagtggtttaccaggg
ccccctggagacagaggtttccctggtcctccaggagctgggagtcctggaccacagggt
gataaaggagaaagcgggctttctggaatccctgggaaccctggacttccaggccccaaa
ggtgaagctggacgtgtcatttccctgcctggtcccccgggggccagaggttttccagga
cctgatggaaatccaggtctccaaggtgacaagggagatccagggatcccaggaagacct
gggctgccaggtgaaaaaggtctggcagggcctccaggaattgggtttcctggccctaca
gggcccccaggctttcctggtcagccaggtccacaaggttcaagcggagggaagggagaa
cctggtccccatggtgcgccaggtgcagctggagccaaaggacagaagggtgaagctgga
ttaggcctcccgggtcctaaagggtttcctggtcctcaaggacgaaatggcattcctgga
ccaaaaggtgaccagggatctcctggtgtgccaggggagaaaggatttcctggcacacct
ggtctgccaggatctcaaggtgaatcgggtcctcctggattaccaggtgtacagggcgct
cctggtgaacccaaaataggctctcctggcccccctggcactccaggacaatttgggcct
ccaggaccaataggaccaccaggaatcaaaggcgagagaggctacccaggtgtccctggg
ctagatatgccaggacctaaaggagacaaagggatcccaggagcagatggtctgtcaggt
gtgccagggttgccaggcttacctggtttacagggacaacaaggacatccaggtgctcca
ggactgaaaggagaaatgggaattatgggtacccctggaattcaaggtgcccctggtcct
agaggaactcctggaaccccaggtgacaaaggtagcataggttttcctggagctgctgga
ccaaaaggtgattcaggttttaaaggtgaaaaaggtgaagctggacttccaggggagcca
ggatcaatggaccctgttgacatggaaaatctgaaaggccaaaaaggagaacaaggagat
aaaggagaaaaaggaataacaggagaaacaggaactccaggaatttctggaagcccagga
atgccaggcaaggttggagatcgtggtttaccaggcaaagcaggaccaaaaggagattca
ggcactccaggattccagggtgaaccaggatttcctggagacaaaggatcaattggcgaa
atgggtttaccagggcttcctggagaaaaggggtttccaggtcttccaggtgaggcaggt
caatcaggatttcctggaattaaaggtgaaaaaggactgaaaggaagccctggacttcct
ggaattggcttccctggagctcctggtgagaagggtgaacaaggatggccgggcagttca
ggtgtatctggagacaaaggtgaaaagggaattccaggtatttcaggcatgcccggattc
ccaggcaacaaagggcagcctggccttccaggttctccaggtgttccaggactgccaggt
gaaaagggacagaaaggaactccaggcgcgggtggttttccaggcttaaaaggacaacca
ggtgaccctggaccacagggtccatatggacctgctggagaaaaaggtgagcctggttat
gatggaatcccaggccctcctggttcaaaaggtgattcaggtcttcccggtagaggattt
cctggaattccaggttcaaaaggagaaagaggtcctaaaggagacatgggatttccaggg
agccctgggagtccaggacttcctggcataaagggagacattggatttgttggcccagaa
ggtcccacaggccaaccaggcattcctgggttaccaggaaagattggagaaggacccaag
ggtgaccggggaccccaagggcaaccggggcttcaagggtttcctgggccccaaggatct
ccaggagttgcaggattaccaggagaaaaaggagaaaaaggaaatccaggttggccaggg
caacctgggaaaactggacccaaaggtgacctgggagttcaaggaatccctggcagtcct
ggttttcctggaacctctggtcagaaaggtgacatgggacctcctggaattccaggtccc
caaggtctaaaaggttcttcgggtttttctggatccaagggagtacaaggtgaccaagga
tttcctggaactaaaggtcttccaggcccaccaggtcctccaggcccttttcaacttctg
aaaggtgaaccaggcctacctggtcttttaggccctgttggccccaaaggatttcctggt
tttccaggaccaaaaggacaacaaggtgtaacaggacctgaaggtttgactggcccccca
ggaataccagggtttgatggcacacctggtcagaaaggagaacagggccctgtgggtcct
ccaggtctgagaggctttcctggtccccctggtcctgaaggcattccagggacgatgggt
ccaccgggcagtccctctgtggctcatggtttccttgtgaccaggcatagccaaaccaca
gaggagccctcctgtccatttgggacaagacttatgttctatggatattctttgctttat
gtacaaggcaatcaacgggcccacggccaggacttgggctctgctggaagctgtctacgt
aaattcagcacaatgcctttcctattctgcaatattaacaatgtctgcaattttgcttca
agaaacgattattcttattggctgtcaacccctgaacccatgccaatgagcatggctcct
ctaacaggagaaagcatcaagcctttcatcagcaggaatagatcgtactcccaaggttat
aaagttatgcacaccagtgcaggggcagaaggttccgggcaagcactggcctctccgggc
tcctgccttgaagagttccgcagtgcaccctttgttgaatgccatggaaaaggcacctgc
aattattacgccaatgcctacagcttctggcttgccacgattgagaggaatgaaatgttc
aagcttcatgtggctactgtttcacttgcttaccaggaatatacagagtataggagctaa
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integrated database retrieval system
