Notechis scutatus (mainland tiger snake): 113419565
Help
Entry
113419565 CDS
T09026
Symbol
COL6A1
Name
(RefSeq) collagen alpha-1(VI) chain
KO
K06238
collagen type VI alpha
Organism
nss
Notechis scutatus (mainland tiger snake)
Pathway
nss04510
Focal adhesion
nss04512
ECM-receptor interaction
nss04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nss00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113419565 (COL6A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
113419565 (COL6A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
113419565 (COL6A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nss04147
]
113419565 (COL6A1)
00536 Glycosaminoglycan binding proteins [BR:
nss00536
]
113419565 (COL6A1)
Exosome [BR:
nss04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
113419565 (COL6A1)
Glycosaminoglycan binding proteins [BR:
nss00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113419565 (COL6A1)
Hyaluronan
Extracellular matrix or blood plasma proteins
113419565 (COL6A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
VWA_3
VWA_CoxE
DUF1194
Toprim_3
vWA-TerF-like
Ku_N
Motif
Other DBs
NCBI-GeneID:
113419565
NCBI-ProteinID:
XP_026534810
UniProt:
A0A6J1UWN4
LinkDB
All DBs
Position
Unknown
AA seq
1010 aa
AA seq
DB search
MKLACIFLIFLFQDCFLIKRVLAQGSQISNRVIAFQDCPVDLFFVLDTSESVSLRVKPFG
RANVDKIKAFTNLFLDKLNDRYYRCDRNLVWNAGALHYSDEVELIKKLTRMPSGRADLKN
RVSSVESIGKGTYTDCAIKAGLEELLIGGSHHRENKYLIVVTDGHPLDGYKEPCGGLEDA
ANEAKHQGIKVFAVAVSPDHLESRLNVIATDHDYRRNFTATVPQSDIPRTIDTIIEMIKD
NVEQVCCSYECQPPRGPQGHIGDPGEEGERGRPGLPGEKGETGDPGKQGDPGPIGYQGMK
GDKGTRGDKGSRGSKGGKGEKGKRGIDGADGNKGDQGYHGLPGCKGSPGFDGLQGPPGQK
GDTGSYGPKGIKGDPGPKGGPGPQGKDGLPGNKGLPGEVGAKGEKGEWGDEGSPGSDGTP
GPKGSPGSEGLRGVPGARGSKGEKGEPGPPGEQGREGLFGPPGDPGKVGAPGPKGFRGDE
GPPGVEGPKGQIGPPGITGNPGVMGDRGDDGPPGNGTIGYPGAPGDPGIRGDRGINGTKG
YPGPKGDDGEIGEPGKQITEPGMKGKKGAKGYRGSEGDPGPPGPPGPPGPDECEILDIIM
KMCSCCECKCGPIDIIFVLDSSESIGETNFGIAKDFIIKVIDRLRTEEHVTFSREDSNLA
IVQYSHGGTEELVLMKDGDVQGFKEAVKNLHWIAGGTFTGEALDYTKKRLPPFFTHKRVI
IVITDGRTDVIHDRTPINVLCERDNQVVPVGSSDIFQDPPDSEKLSEISCGGLTFTQPEY
IALLDDTFIQNVTSYVCREKQCPDYTCPITFANSADITLLVDSSTSVGAHNFNVTKKFVK
RLAERFITADKSPGASVRVTVVQYSGNTQQKLEVDFQRNYTVIADIIDKMEFINDGTDVV
AALNYVTSLFRRSSRPANKKRVLIFSDGNSQGITQNDIERAVQNAQQADIEIYVLAVGTQ
ANEPNLRLLVSQKAQDDVAFRERHLFRVPNYQSLLKGVFYQTVSRKLAIA
NT seq
3033 nt
NT seq
+upstream
nt +downstream
nt
atgaagttagcctgcatcttccttattttcctatttcaggactgttttttaataaagagg
gttctcgctcagggatcacaaatatccaacagagtaatagccttccaagattgcccggtg
gatttgttttttgtcctggatacctctgagagcgtttccttaagggtaaaaccttttggg
agagccaatgttgacaagatcaaagcattcactaatctattccttgataaattaaatgac
agatactatcggtgtgaccgaaatctcgtgtggaatgcaggtgccttacattacagtgat
gaggtggaactgatcaagaaacttacccggatgcccagtgggcgagcggacttgaagaac
cgcgtgtcctcagtagagtctattgggaaaggcacctatactgactgtgccattaaggca
gggctggaagaactactcattggcggatctcatcacagggaaaataagtatcttattgtg
gtgacagatggacatcccttagatggttacaaagagccctgtgggggactggaagatgct
gccaatgaagcaaagcaccaggggatcaaagtgtttgctgttgctgtatctccagaccat
ctggaatccagattaaatgtgattgctacagaccatgactatcgtcgcaatttcacagca
actgtaccacaaagcgatatacctagaacaattgacaccatcattgaaatgattaaagat
aatgtggagcaagtgtgctgttcctatgaatgtcagcctcctcgagggcctcaagggcac
attggggacccaggagaagagggagaaagagggagacctggcttgccaggagaaaaagga
gaaactggagaccccggaaagcaaggcgacccaggacctattggctaccaagggatgaag
ggagacaagggtacccgaggggacaagggctcaagaggttcaaaaggaggcaagggagag
aagggcaagcgtggcatagatggcgctgatggcaacaagggtgaccaaggatatcatgga
ctaccaggatgcaaaggatctcctgggtttgatggcttacaaggacctcctggacaaaaa
ggggatactggttcttatggacccaaagggataaagggagaccctggacccaaaggaggt
ccaggcccacaaggaaaagatggacttcctggcaacaagggtctgcctggagaagtggga
gccaaaggagaaaaaggagaatggggagatgagggaagtcctggctctgatggtacccct
ggaccaaagggtagccctggatctgaaggcttacgaggggtccctggggctcgtggatca
aaaggagaaaagggtgagccaggtccaccaggagaacaaggacgtgagggactttttgga
ccaccaggagacccaggtaaagtaggtgcacctggacctaagggttttagaggagatgaa
ggacctcctggagtagagggtcctaaaggacagattggaccacccggaataactggaaac
cctggcgtgatgggtgatagaggagatgatggcccacccggaaatgggaccattggctat
cctggtgctccaggagatcccggaatcagaggtgaccgtggaattaatggcaccaaagga
taccctgggcccaaaggtgatgatggtgaaattggagagcctggtaaacaaataactgaa
cctgggatgaaaggcaagaaaggtgctaaaggttacaggggatcagaaggggacccagga
cctccaggacctccaggaccccctgggccagatgaatgtgaaattttggatatcatcatg
aaaatgtgttcttgctgtgaatgtaagtgtggtcccattgatattatattcgtactagac
agttctgagagtattggagaaacgaattttggtattgcaaaggattttataattaaagtt
attgacaggctgcgcacagaagaacatgtaacgttttccagagaagactccaatcttgct
attgtgcagtatagtcatggtggaactgaagaattggtgctcatgaaagatggagacgtt
caaggtttcaaggaggctgtgaagaatcttcactggattgctggtggcacctttactgga
gaggctcttgactacaccaaaaaacgtcttcccccgtttttcactcacaaaagagttatc
attgtcatcacagatggacggactgacgtaatacacgatcgaacacccatcaatgttctt
tgtgaaagagataatcaggttgtccctgtgggttctagtgatattttccaagatcctcca
gattctgaaaaattaagtgaaatatcctgtggaggcctcacatttacccaaccagagtat
attgccttgctggatgacaccttcattcagaatgttacctcttatgtttgtcgagaaaaa
caatgtcccgactatacctgcccaattacttttgctaactcagctgatatcacccttctc
gtggatagctctaccagtgttggggcccataacttcaatgtcaccaagaagtttgtaaaa
cgccttgcagaacgattcataacagctgataaaagtccaggggcttctgtgcgcgtcact
gttgtccagtacagtggcaacacacagcaaaaactggaggtggactttcaacggaactac
acagtgatagctgatataattgataaaatggaatttataaacgatggcacagatgttgtt
gcagccttgaactatgtcaccagcctgtttcggaggtcctctcgtcctgctaataagaag
agggtactgatcttctcagatggcaattctcaaggtatcactcaaaatgacatcgaaaga
gcagtccagaatgctcaacaggcagacattgaaatctatgtacttgctgttggcactcaa
gccaatgagcccaacctacgtttgcttgtctcccaaaaagctcaggatgatgtagccttc
agagagcgccaccttttcagagtacccaattatcaatctttgctgaaaggtgtattctat
caaactgtctccagaaaactagctatagcctga
DBGET
integrated database retrieval system
