Notechis scutatus (mainland tiger snake): 113419566
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Entry
113419566 CDS
T09026
Symbol
COL6A2
Name
(RefSeq) collagen alpha-2(VI) chain isoform X1
KO
K06238
collagen type VI alpha
Organism
nss
Notechis scutatus (mainland tiger snake)
Pathway
nss04510
Focal adhesion
nss04512
ECM-receptor interaction
nss04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nss00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113419566 (COL6A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
113419566 (COL6A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
113419566 (COL6A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nss04147
]
113419566 (COL6A2)
00536 Glycosaminoglycan binding proteins [BR:
nss00536
]
113419566 (COL6A2)
Exosome [BR:
nss04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
113419566 (COL6A2)
Glycosaminoglycan binding proteins [BR:
nss00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113419566 (COL6A2)
Hyaluronan
Extracellular matrix or blood plasma proteins
113419566 (COL6A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Motif
Other DBs
NCBI-GeneID:
113419566
NCBI-ProteinID:
XP_026534811
UniProt:
A0A6J1UV22
LinkDB
All DBs
Position
Unknown
AA seq
1012 aa
AA seq
DB search
MFPQAFLAVLLCTTVVPLHAQNDEGTLCTDKTECPITVYFVIDTSESIALQTDPIESLVN
HSKKFVTQFVNKLANEVYQQQISINWQIGGLHFSDIVIIFSSLTQDKALFNDRLKNIRYI
GRGTFTDCALSNMTAQMPLNSLGANYAVVITDGHVTGHPCGGMKQQADRARDAGIKLFAV
APSQKIYEHGLQEIASLPHELFRNNYATLKKGTVDEDTEAMDKIIQVMKHDAFEKCYKMS
CLEIQGPRGPKGVQGQKGAKGNMGIPGIFGQKGRQGDPGIEGPIGHPGPKGISGLKGEKG
EFGADGRKGAGGTSGRNGTDGQKGRMGRIGPPGCKGDPGERGPDGYPGGPGAKGSPGEEG
IKGDPGRPGKHGPPGPDGELGSSGPKGYKGEPGLPGLKGSPGEKGLGGPKGEAGRRGDPG
DIGKPGNQGSKGEKGDPGFEGQRGLPGEVGEKGRNGDPGPSGQRGAPGPVGDKGSPGSAG
NPGREGERGDMGPKGPKGDRGRPGLSVPGPRGSRGDKGEKGQPGPEGARGDPGPKGLRGK
KGDPGDDGGVGLSGPPGSRGPSGEPGPEGDPGPPGDPGLTDCDVMTYIRETCGCCDCEKR
CGPLDIVFVIDSSESIGYTNFSLEKNFVINVVSRLGSIAKDPKSETGARVGVVQYSHKGT
FEAIQLNDKRIDSLSSFKEAVKKLEWIAGGTWTPSALQFAYETLIKESRRDKARVFAVVV
TDGRHDPRDKDSNLQALCDGNVVVNAIGIGDMFNVDEESETLKAIACNDQERVQRMKVFT
DLVAEEFLDKIEIELCPDPQIVCPELPCQTELSVTQCIQRPVDLVFLLDGSERIGSQNFR
RAHAFIEAVAEQLPLARSDSDDMNARIALLQYGNEDEHDIVFPLTYNITDITDRLAKIKY
LDSSSNIGSAIIYAVNNLVINTQDRQKAARRNAELSFVFITDGFTSNKNLEEAIDSMKKQ
NVMPTTVALGSDVDMDVLLKISLGDRSAIFREKDYLSLSQPDFFDRFVRWIC
NT seq
3039 nt
NT seq
+upstream
nt +downstream
nt
atgttcccacaagcctttttagctgttctgctctgcacaactgtggtccccctccatgct
caaaatgatgaaggaactctctgtacagataaaactgagtgtcctatcacagtgtacttt
gtcattgacacatctgagagcattgcccttcagactgaccctattgagagtttagtgaac
cacagcaagaagtttgttactcagttcgtcaataagctggccaatgaggtctaccaacaa
caaatatccataaattggcaaattgggggacttcatttttcagatatagtgataatcttt
agttctttaacccaagacaaggcgctattcaatgatcggttgaaaaatatccgttacatt
ggtcggggcactttcacagattgtgctctctcgaacatgacggctcagatgcctctcaat
tcactgggggcgaattatgccgttgtgatcactgatggccatgtgacaggtcatccctgt
ggagggatgaagcagcaagctgatcgagcgcgagatgcagggatcaagctctttgcagtg
gcccctagccagaaaatctatgagcatggtctccaggaaattgccagccttccacatgag
cttttccggaacaactatgccaccctaaagaaaggtactgttgatgaagatactgaggcc
atggataagatcatccaagttatgaaacatgatgcctttgaaaagtgctataaaatgagc
tgccttgaaattcaaggcccacgtggtccaaagggagttcaaggacaaaagggtgcgaaa
gggaacatggggattccaggcatttttgggcaaaaaggacgacaaggtgatccaggaatt
gaaggtccaattggacaccctgggcctaagggtatttctggtctaaaaggagagaaggga
gagtttggagcagatggacgaaagggagctggtggtacttctggaagaaatggcactgat
ggacagaagggcaggatggggcggattggacctcctggctgtaagggtgacccaggcgaa
aggggtcctgatggctacccaggaggccctggtgctaaagggtcaccgggagaggaaggg
ataaagggagatcctggccggcctggcaaacatggcccacctggtcccgatggagaactc
ggaagttctggaccaaaaggatacaaaggagaacctggtcttcctggtctcaagggaagt
ccaggcgagaaaggacttgggggaccaaaaggagaagctggtcgtcgtggtgatcctgga
gacataggaaaacctggaaatcaaggatccaagggggaaaaaggagatcctggttttgag
ggacaaaggggtctaccaggagaagttggagagaaaggaagaaatggagatccaggacca
tcaggccagcgtggtgcaccaggccctgtgggagataagggcagccccggctcagctgga
aatccggggagagaaggtgaaaggggcgacatggggcctaaaggacccaagggtgatagg
ggaagacctggcttaagtgttcctggtcccaggggatctcggggtgacaaaggtgaaaag
ggtcagccaggcccagagggtgcaagaggtgaccctggaccaaaaggacttagagggaaa
aaaggagacccaggtgatgatggaggagtcggcctttcaggtccacctggatccagggga
ccaagtggtgaacctggacctgagggtgaccctggtcctcctggagatcccggcctaact
gactgcgatgtgatgacctacatcagagagacctgtggctgctgtgattgtgagaagcgg
tgtggtccattggacattgtctttgtcatagacagttcagagagtatcggctataccaat
ttttccctggagaaaaattttgttatcaatgtggtgagcaggctagggtccattgccaaa
gatccaaaatctgagacaggtgcccgtgttggagtggtacagtacagtcataagggaact
tttgaagccatccagctcaatgacaaacgcattgactcactctctagtttcaaagaagca
gtgaagaaactggagtggattgcagggggtacctggactccctctgcacttcagtttgct
tatgaaacactcatcaaagaaagccggagagataaagcccgggtgtttgctgtggtggtg
actgatggacgtcatgaccctcgagataaagactcaaacttacaagccctctgtgatgga
aatgtcgtggtcaatgccattgggattggagacatgttcaatgtagacgaggaatcggag
actctgaaagcaattgcttgtaatgaccaggagagagtccaaagaatgaaagtcttcact
gatttagtggctgaagagttccttgacaaaatagagattgaactttgtccagatcctcag
attgtctgccctgaactgccctgccaaacagagctttctgtcacccagtgcatccagcgt
ccagttgaccttgtcttcctcctggatggttctgaaagaattggcagccagaattttcgc
agggcccatgcctttatagaagcagtggctgagcagctccccctggccagaagtgacagt
gacgacatgaatgcacgcattgccctgctacaatatggaaatgaggacgaacatgacata
gttttcccattgacatacaatattactgacatcacagatcgtttagccaagatcaaatat
ttggactcctcttccaacattgggtctgccatcatatatgctgtcaacaaccttgtcatt
aacacacaagacaggcagaaggcagctcggcgtaatgcggagctgtcctttgtcttcatt
acagatggttttacaagcaacaaaaacctggaagaggcaattgattccatgaagaagcag
aacgttatgcccacaaccgtggccctaggcagtgatgtggacatggatgtcctcctgaaa
atcagtctaggagatcggtcagccattttccgggagaaggactacctaagtctctcccag
cctgacttctttgatagatttgttaggtggatctgttag
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