KEGG   Notechis scutatus (mainland tiger snake): 113419850
Entry
113419850         CDS       T09026                                 
Symbol
SNRNP40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
nss  Notechis scutatus (mainland tiger snake)
Pathway
nss03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:nss00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    113419850 (SNRNP40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:nss03041]
    113419850 (SNRNP40)
Spliceosome [BR:nss03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    113419850 (SNRNP40)
 Complex C
   U5 SnRNP specific factors
    113419850 (SNRNP40)
SSDB
Motif
Pfam: WD40 WD40_WDHD1_1st WD40_Prp19 Beta-prop_TEP1_2nd WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_EML_2 WDR55 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 WDR90_beta-prop_4th Beta-prop_SCAP Beta-prop_EIPR1 WD40_MABP1-WDR62_1st Beta-prop_SPT8 ANAPC4_WD40 Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_WDR19_1st eIF2A Beta-prop_Vps41 Beta-prop_WDR75_2nd Beta-prop_WDR35_TULP_N Ge1_WD40 Beta-prop_NWD2_C Beta-prop_HPS5 Beta-prop_RIG_1st Beta-prop_IFT140_2nd Cytochrom_D1 WDR54 Beta-prop_Nup120_160
Other DBs
NCBI-GeneID: 113419850
NCBI-ProteinID: XP_026535224
Ensembl: ENSNSUG00000013122
UniProt: A0A6J1V607
LinkDB
Position
Unknown
AA seq 359 aa
MIDPQKRKAPGPDMALVAAAAAAKKPRHELILGPGPGAGQPPPGALLQAGPPRCSSLQAP
IMLLSGHEGEVYCCKFHPNGATLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYN
TDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKL
WDIRKKAAVQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSV
TGLSLSAEGSYLLSNAMDNAVRIWDVRPFAPKERCVKILQGNVHNFEKNLLRCSWSPDGS
KIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPEEPIVLSASSDKRLYMGEIQ
NT seq 1080 nt   +upstreamnt  +downstreamnt
atgatcgacccgcagaaacggaaggctcctgggccggatatggctttggtggcggcggct
gcggctgctaagaaaccccgccatgagctcattttggggccgggtcccggagctgggcaa
ccgcctccgggcgccttgttgcaggcgggccctccaagatgttcctcattgcaagcaccc
ataatgttactttctggtcatgaaggagaggtttattgttgcaagtttcatcctaatgga
gccaccttagcctcagctgggtttgacaggttgatactcctatggaatgtgtatggtgac
tgtgataattacgccactttgaagggccacagtggtgcagttatggaattacattacaac
actgatggcagcatgctgttctcggcctccacggataaaacagtagcagtatgggatagt
gagacaggagagagagtgaaaagacttaaaggacacacttcatttgtcaactcctgctat
ccagcaagacgtggacctcaactggtttgcacaggcagtgatgatgggacagtgaagctc
tgggacatcaggaagaaagcggctgttcagacctttcagaacacctatcaagtattagct
gtgaccttcaatgataccagtgatcagataatatctggcggtatcgacaacgatatcaag
gtatgggaccttcgtcagaacaagctaacttacacaatgagaggacatgcggattctgtc
acgggcctcagcctcagtgcagagggctcttacttgctttccaatgcaatggacaatgca
gttcgcatctgggatgttcggccctttgctcccaaagaaagatgtgtgaagatactccaa
gggaacgtgcataattttgagaagaaccttttgcgatgttcctggtccccagatggaagt
aaaatagctgctggatctgcagacaggtttgtttatgtgtgggatacaacctccagaagg
atcctctacaaacttccaggccatgcgggttcaataaatgaagtggcctttcatccagaa
gaaccaatagtactttctgcatctagcgacaaaagactgtatatgggagagatccagtga

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