Notechis scutatus (mainland tiger snake): 113422330
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Entry
113422330 CDS
T09026
Symbol
PCDH1
Name
(RefSeq) protocadherin-1
KO
K16498
protocadherin delta 1
Organism
nss
Notechis scutatus (mainland tiger snake)
Pathway
nss03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
nss00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
113422330 (PCDH1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
nss01009
]
113422330 (PCDH1)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
nss04515
]
113422330 (PCDH1)
Protein phosphatases and associated proteins [BR:
nss01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
113422330 (PCDH1)
Cell adhesion molecules [BR:
nss04515
]
Cadherins
Protocadherins
113422330 (PCDH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
Collectrin
Syndecan
TMEM154
Mid2
Motif
Other DBs
NCBI-GeneID:
113422330
NCBI-ProteinID:
XP_026538971
UniProt:
A0A6J1V6R8
LinkDB
All DBs
Position
Unknown
AA seq
1021 aa
AA seq
DB search
MQQLVSCLGVWFFLQLPNLGSGTRVVYKVQEEQPPNTLIGSLAADYGFPDVGHLYKLEVG
APYLRVDGKTGDIYTTETSIDRESLRECQHLFPGDPCFLEFEVSITDLMNNSPRLLEGQI
EVMDINDNTPNFASPVITLAIPENTNIGALFPIPLAMDRDAGANGVASYELMPGSDAQKL
FGLQVAEDQDEKQPQLIVMGNLDREQSESYDLTIRVQDGGSPPRASSALLRITILDMNDN
APKFEKPLYEAELSENSPIGHSVLQVKANDSDQGANAEIDYSFHQASDVIHRLLRLDRAT
GLITVQGPVDREDINVLKFSVLAKDKGANPKTARAQVVISVRDMNDNAPSIEIRGIGLVT
HQDGIANISEDVPVETPVALVQVSDRDEGENAVVTCVVAGDVPFQLRQASDTGSDSKKKY
FLQTTTPLDYEAVKEYTIEIVAVDSGNPPLSSTNSLKVQVMDVNDNDPVFSQSSTEVAFP
ENNSPNDLVVEVSATDADSGSNAKLVYSLAGESLSKDTFSIDPESGEIHVKNVLDREQQE
RYEFLVVATDKGSPSRKGTASIAISVMDRNDNDPKFMLSGYNFSVMENMPPLSPVGMVTV
IDADKGDNAVIQLSVEQDNGDFVIQNGTGTILSSISFDRERQSTYTFRLKAVDGGDPPRS
AYVGVTINVLDENDNAPVIIFPSNASYKHILPNTSPGQQVMSVGAEDIDSGINAELLFRI
AGGNPFELFKISSVSGNITLEKEILRKHHGLHRLVVHVNDKGKPSHHGTALVHFYVNETL
ANRTLLETLVGHSLDTPIDIDIAGDPEYERNKQRSNILFGVIAGIVAVTLIILLVVLVRY
CRQKEAKSGYQAGKKETKDLYAPKQSSKGNKAKSKVKKSKSTKPPKPTEDEEETGLQKSL
KFNLMNDSVSDSPRIHLPLNYPPGSPDLGRHYRSNSPLPSIQLQPQSPSASKKHQVVQDL
PATNTFVGTGDSNSTGSEQYSDYSYRTNPQKYTNKQVGEIVLHSPTIPSCYNRAIWTEVW
E
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atgcagcagctggtttcttgcctgggtgtgtggtttttcctccagcttcccaaccttggt
tctggaacacgtgttgtctacaaagtacaggaagagcagccacccaatacactcattgga
agtctggcagcagactatggcttcccagatgtagggcatctctataaattagaggtgggt
gccccctatctgcgtgtggatggcaagactggtgatatctataccacagaaacttccatt
gatcgagaaagcctgagagagtgccagcacttgttcccaggagatccttgttttctggaa
tttgaggtttctatcacagacctgatgaataatagcccacgcctactggagggacagatt
gaagtgatggacatcaatgacaatacacccaactttgcatctcctgtcatcacactagcc
attcctgaaaataccaatattggtgcacttttccctattccattggccatggatcgtgat
gctggtgccaatggtgttgcttcctatgaactcatgcctggttcagatgctcagaaactt
tttggcttacaagtagcagaggatcaagatgagaaacagccacaactaattgtaatggga
aacctagaccgggagcaatcagagtcttatgacttaactatccgggttcaagatgggggt
agcccacctcgtgctagcagcgctttgttgcggatcaccattctggacatgaatgacaat
gcaccaaagtttgagaaaccattgtatgaggctgaactttcagaaaatagtcctattggt
cactctgtactgcaggtgaaagccaatgattctgatcagggtgccaatgctgagattgat
tattccttccatcaggcttcagatgtaattcatcggctgctacgcttagacagagctact
ggactcatcacagtacaaggtcctgttgatcgtgaagatattaatgtgctcaagttctca
gtgttggctaaggacaagggagctaaccccaaaacagcccgtgcccaggtagtgatcagt
gtcagggatatgaatgataatgctccatccattgaaattcgtggtattggtttggtgact
catcaggatggcattgccaatatttcagaagatgtgccagttgagacacctgtggctctg
gtgcaggtgtctgatcgggatgagggtgaaaatgctgttgtaacctgtgtggtggctggt
gatgtaccttttcagctgcgacaagccagtgataccggcagtgatagcaaaaagaaatat
tttctacagaccactacacctttggattatgaagcagtgaaagagtataccattgagatt
gtagctgtggattctggtaacccacccctgtcaagcactaattccctaaaagtgcaggtg
atggatgtcaatgacaatgatccagtgtttagccagagctcaacagaggtggcatttcct
gagaataattctccaaatgacttggtggtagaagtgagtgctactgatgcagatagtgga
tctaatgctaaactggtctactcccttgctggagaatctttatcaaaagacactttctca
attgatccagaatctggtgaaatccatgtaaaaaatgtgctggaccgggaacagcaagaa
cgttatgaattcttagtagttgcaactgacaagggtagccctagccgcaaaggaactgcc
tcaattgccatcagtgtcatggatcgcaatgataacgatccaaaattcatgctcagtggc
tacaatttttctgtcatggaaaacatgccaccgctgagtccagtgggcatggtgacagtt
attgatgcagacaaaggagataatgctgtcattcagctgtcagtggaacaggacaatggt
gactttgtcatccaaaatggtactggaaccattctctccagtatatcttttgatcgtgaa
cgacaaagtacttacactttccgccttaaagctgtggatgggggagacccacctagatct
gcttatgtgggggtgacaattaatgtattagatgagaatgacaatgctcctgtaattata
tttccatccaatgcttcctataaacatattctgcctaatactagtcctgggcaacaggtt
atgagtgttggagctgaagacattgattctggaatcaatgctgaattactatttagaatt
gctgggggaaacccctttgaactctttaagatttcatctgtaagtggaaatatcacacta
gaaaaagagattctccgcaagcaccatggacttcaccgcttggttgtacatgtaaatgac
aaagggaaaccttctcaccatggcacagcattagttcatttttatgtgaatgaaacattg
gctaatcggacactgttggagactctagtaggacacagcctggacacacctattgacatt
gacattgctggagacccagagtatgaacgcaacaagcagcgcagtaatattttgtttgga
gtcattgcaggcattgtggctgttaccttgataattttgctagttgtgttggtacgctac
tgccgtcaaaaggaggccaaaagtggttatcaagctggcaaaaaggaaactaaggatctg
tacgctcccaaacaaagtagcaaagggaacaaagccaaaagcaaagtgaaaaaaagcaaa
tccactaagccaccaaaaccaactgaggatgaagaagaaacaggtctgcagaaatcgctt
aaattcaaccttatgaatgattcagtaagtgacagtccccgcatccatctgcctcttaat
tatccacctggaagccctgacttgggccgccattaccgttccaattcacctttgccttcc
attcaactgcaaccccaatcaccatctgcctccaagaagcatcaggtagtacaggacctc
ccagccaccaatacatttgtgggcactggggacagcaattctacaggctcggagcagtat
tcagactacagctaccgtaccaaccctcagaaatacaccaataaacaggtaggagagatt
gtgctgcactcacccaccattccctcatgctacaacagggccatatggacagaggtgtgg
gaatga
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