Notechis scutatus (mainland tiger snake): 113422363
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Entry
113422363 CDS
T09026
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
nss
Notechis scutatus (mainland tiger snake)
Pathway
nss03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nss00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113422363 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nss03019
]
113422363 (PARN)
Enzymes [BR:
nss01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
113422363 (PARN)
Messenger RNA biogenesis [BR:
nss03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
113422363 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
RRM_1
NCBP3
Motif
Other DBs
NCBI-GeneID:
113422363
NCBI-ProteinID:
XP_026539028
UniProt:
A0A6J1VEL7
LinkDB
All DBs
Position
Unknown
AA seq
634 aa
AA seq
DB search
MEITRGNFKSALGTVYEAVEDADFLAIDGEFSGISDGPSVSALTNGFDTPEERYQKLRKH
SMDFLLFQFGLCTFKYDHTESKYNMKSFNFYIFPKPLNRTSPDVKFVCQSSSIDFLANQG
FDFNKVFRNGIPYLNQEEERQLREQYDEKRCQANGLGGLDAAKPPSAVPEDQKEFIKKVV
ERIEDLLQNEGNTTVQLEPCTGFQRKLIYQTLSWKYPKGIHVETVETEQKERYMIISKMD
EEERKRREQEKRAREQEELRDAVGFSRVIHALANSGKLVVGHNMLLDVMHTIHQFYCSLP
EDFREFKELATCVFPRLLDTKLMASTQPFKEIIKNTSLAELEKRLKETPFSPPRVESAEG
FPSYNTASEQLHEAGYDAYITGLCFISMANFLGSFLSPPTNHVSARSKLIEPFFNKLFLM
RVMDIPYLNLQGPDLQPKRDHVLYVTFPKEWKTSDLYQLFSAFGNIHVCWIDDTSAFVSL
SQPEQVQIAVNTSKYAESYRIQTYAEYYEKKEEERRQAKRKWAEDSWKEMEVKRLKTQAS
PFALQSRCYSICSFSTPSSVGKRSMSPIQEESITDDVEEATVQEVDLPPPGSFQEPPEEE
EKQAKKLRTGEREETLDGGLKATPARLFDVPDTW
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atggagatcacccggggcaatttcaagagcgcgctgggcaccgtctacgaggccgtggaa
gacgccgatttcctggcgatcgacggggagttttcaggcatcagcgacgggccgtccgtg
agcgcgctgaccaacggcttcgacacgcccgaggagcggtaccagaagctacggaagcat
tccatggatttcctgctcttccagtttggtctatgcacttttaagtacgatcacacagaa
tctaagtataacatgaaatcgtttaacttctatattttccccaaacctttgaacagaaca
tcaccagatgtcaagtttgtctgtcagagctcaagtatagattttttagcaaaccaggga
tttgattttaataaagtttttcgaaatggtatcccttacttaaatcaagaagaagaaaga
caattacgggagcaatatgacgagaagcgctgtcaagccaatggacttgggggcttggat
gctgccaagcctccatcggctgttcctgaggatcagaaggagttcatcaagaaagttgta
gaaaggatagaagatctcctgcaaaatgaaggaaacaccaccgtgcagctggagccgtgc
actggatttcagaggaaactaatctatcagacgctgagctggaaatatccaaaaggcatc
catgttgaaaccgtggaaacagaacagaaggagcgatacatgatcatcagcaaaatggat
gaagaggagcgcaagagaagagagcaggagaagcgagcgagagagcaggaggagctgagg
gatgcagtggggttttccagagtcattcacgcccttgcaaattcgggcaagctggtggtc
ggacacaacatgttgctggacgtcatgcacaccatccatcagttctactgctccctcccc
gaggatttcagggagttcaaagaactagcaacatgcgtctttccaagactattggacact
aaattgatggcaagcactcagccattcaaggaaatcattaagaatacatccctggcagag
ttggaaaagcgtttgaaggagacgcccttcagccctccaagagttgaaagcgccgagggg
tttcccagctacaacacggcatcagagcagcttcatgaagctggatatgatgcatacatc
acgggcctctgcttcatctccatggcaaacttcctaggttcctttctcagccctcccaca
aatcatgtctctgcccgttcaaagctgatcgagccttttttcaacaaattattcctgatg
agggtgatggacattccgtatctcaatttgcagggaccagatttgcagccaaaacgtgat
cacgtcctttatgttacctttcccaaagagtggaagacaagtgacctttaccagcttttt
agtgctttcggaaacattcatgtctgttggatcgacgatacatcagcatttgtatccctg
agtcagcctgaacaagtacagattgctgttaataccagcaagtatgctgaaagttaccgg
attcagacttacgcagaatattatgaaaagaaggaggaggagaggaggcaggcgaagagg
aaatgggcagaagacagttggaaggagatggaagtgaagcgcttaaagacgcaggccagc
cccttcgcactccagagccgctgctacagcatttgcagtttttcaacgcccagctctgtg
gggaagagaagcatgagccccatccaagaggagagcatcacagatgacgtggaggaggcc
acggtgcaagaggtagacctgccccccccaggctccttccaggagccccctgaagaagag
gagaagcaagccaagaagctcaggacgggcgaaagggaagaaacattggatggggggctc
aaggccactcccgccaggctttttgacgtgccggacacatggtag
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