Notechis scutatus (mainland tiger snake): 113423119
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Entry
113423119 CDS
T09026
Symbol
PALB2
Name
(RefSeq) partner and localizer of BRCA2
KO
K10897
partner and localizer of BRCA2
Organism
nss
Notechis scutatus (mainland tiger snake)
Pathway
nss03440
Homologous recombination
nss03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
nss00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
113423119 (PALB2)
03460 Fanconi anemia pathway
113423119 (PALB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nss03400
]
113423119 (PALB2)
DNA repair and recombination proteins [BR:
nss03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
113423119 (PALB2)
FA (Fanconi anemia) pathway
Downstream FA components
113423119 (PALB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PALB2_WD40
Motif
Other DBs
NCBI-GeneID:
113423119
NCBI-ProteinID:
XP_026540161
UniProt:
A0A6J1VA95
LinkDB
All DBs
Position
Unknown
AA seq
985 aa
AA seq
DB search
MRRKASGSARMEGLGSAVLTPQQKEQLKEKLAVLKREYNRTFHRLQRAERAARVKNDIKE
TVAEQNLLLGQEEAVKNHAGNLSQLSPEEGQAGISCPGSTAETTPVLFKSGAFEGSLPET
SGSRRAHQPGRRVLFDSAEPPLARNSSLHSTGGRGREQREGLSLATWGETAWEARRREPE
RATEPGWESPGSSRSSSLLDPGQRSPPKSSLRASQGGSGDVTPAMSDPGSELSRRMQTDG
PAAMQELPCSLPPASRGSCLEPLSQQEGVSGLGDLAAGSWSLWASVRSEGQPGQGCKEGA
GSLPVTPDAARGGRAVPDGPRDDGEPPRRETSREDEGHSLGAGPAPLGGVTPSEEGLSSC
TVVEGLMFPLEYYVRVTRRLSGRQKEVNLEAVVQSQLGKGRKGRRGPHKGQGGDPAQPPQ
ELPKRDDRLSSTPRMRGDASGSPPHSPESGRSGQGRRSRRLRRRRTQQRTSFSTGSPPAS
SPGLASPALWMVEDPPAPAALPLTPLGGQGSRLGWLPPGLPPQEFHLPEEDFGHLKSKKL
KVCPEKPLGAWDARGSSKSPPRPPGEAPLEEGAALGQTLLSGTSGGSSALSSRELLLSPA
LEAGQSLLQSPNFPLVGATPAPLQSSPGGPGASLVQAAVAASPDPGRGIGQPCSPAGIGR
KAQEEAASPSQKPLERDKEPPRQSGPAKEDQVEAPAGTLREGRLKMTSKLKNGSGSCLVD
MSAVWWEATDFAELCMVTAEEASISLWRPLEPGQWGTVHTWHFTKLPVLQIVPLSGAHSV
VCAVLGRLETAEIRLLFGCAKEELLKAGNINAVLGLADRKLVSSCWSLQGQAVEVFSFSE
VGRTHSIESIDQDIIERQFGGLLFLVFSHPHAKDSQLPGNPAFQIMALNPKTARSSEVML
LAPPPGVQGRYLEHDVRGSSAAAVLTSGTIAVWDLFLGQCTALLPPNSGGSWSLARWSVT
DTCLLAGQEDGSVYLYRYSGGLHPG
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
atgcgccggaaggcgagcgggagtgcgagaatggagggtctcggctcggcggttctgacc
ccgcagcagaaggagcagctgaaagaaaaactggctgtattgaaaagagaatacaacaga
acattccacaggttacagcgtgctgagagagcggcgagggttaaaaacgatatcaaggaa
acggttgcagagcagaacctgctactcggacaggaggaagctgtgaagaaccatgcagga
aacctcagtcaactgtctcccgaggagggtcaggctgggatttcctgcccaggcagcacc
gcggagaccacgccggtcctctttaagtccggagcctttgaaggcagcttgccagaaacg
tcaggctcccgaagggcccatcagcctggccgaagggtgctctttgattctgcggagcca
cctctggcgaggaacagcagcctgcactcaaccggcggacgtggcagagagcagcgagaa
gggctttctctggccacgtggggagaaacggcgtgggaggcgcgtcggagggagcctgag
agggccacagagccaggctgggagtctccaggctctagcagaagcagcagcctcttggac
cccggccagaggagcccccccaagtcctccctgcgggctagccaaggagggagtggcgat
gtgactcccgcaatgtcagacccaggctctgaactgagcaggcggatgcaaacggatggt
cctgcggcaatgcaagaacttccttgttccctgccacccgcgagtcgagggtcctgcctt
gagcctctgagccaacaagagggtgtttctggtctgggggacttggctgctgggagctgg
tccttatgggccagcgtgcggagcgaggggcagcctgggcaggggtgcaaggaaggtgca
ggaagcttgccggtgacccccgacgctgctcgaggaggcagagctgttcccgatgggccc
agagatgacggagagccccccaggagggagacaagcagggaggacgaagggcacagcctt
ggagcagggccagcccccctgggaggggtcacccccagtgaggaggggctgagctcttgc
acagtggtggagggactcatgtttcccctggagtattacgtgcgcgtgacccggaggctc
tccgggcgccagaaggaggtgaacttggaggcggttgtccagagccagctgggcaagggc
aggaagggccggagaggcccccacaaagggcaggggggggatccggcccagcccccccag
gagctccccaaaagggacgaccggctgagctcaactcccaggatgcgaggagatgcttct
gggtctccacctcactctcccgagagcggcaggtctggccagggcaggaggagccggagg
ctgaggaggaggaggacccagcagaggacttccttcagcacaggcagcccaccagcaagc
tccccaggtctggcttctcctgccctctggatggtggaggatcctcctgctcctgcagct
ttgcctctcacccccctgggtgggcaggggtcccgcctcggctggctgcctcccggcctg
ccgcctcaagagttccacctgcccgaggaggatttcggccacctgaaatccaagaagctc
aaagtctgtcccgagaagccattgggggcctgggatgccaggggatccagcaagagtcct
ccgagaccccctggggaggctcctctcgaggaaggagcagcgttggggcaaaccctcctg
tccgggacgagtgggggctcctccgctctttcttcccgtgagctgctcctctccccggcc
ttggaggctggacagagccttttgcaaagccctaattttcccctggtgggggcaaccccg
gctcccctgcagtcctccccaggcggccctggggcctctcttgtgcaagcagcggtggca
gcatctcctgacccaggaaggggcatcgggcagccttgttcgccagctggcatcggcagg
aaggcccaggaagaagccgccagcccatcacagaagccgcttgagcgcgacaaggagccc
cccaggcagagcggcccagcaaaggaggaccaagtggaggcaccggcgggcactctgaga
gaaggacgcttgaaaatgacttcaaaactgaagaacggctccggctcctgcttggtggac
atgagcgccgtgtggtgggaagccactgacttcgcggaattgtgtatggtgacagccgag
gaagcctccatctctctctggaggcctctggaacctggccagtgggggacggtgcacacc
tggcactttacaaagcttccagttcttcaaatagttcccctgtcgggagctcacagcgtg
gtgtgcgcagtgctggggcgcctggagacagccgagataaggcttttgttcggctgtgct
aaagaggagctgctcaaagctggaaacatcaacgctgtccttggtctggccgataggaag
ctggtcagcagctgttggtcactgcaaggtcaagcagtggaagtcttctctttctctgag
gtgggaaggactcactctattgaatctattgaccaagatataattgagaggcagtttggc
ggcctcctgttcctggtcttcagccacccacacgccaaagacagccagctgcctgggaac
ccggccttccagatcatggcgctcaaccccaagaccgccagaagctctgaggtgatgctc
ttggccccgccccccggcgtccaaggaagatacttggagcacgacgtgaggggctcttcg
gccgcagctgtcctgacatctggaaccattgcggtgtgggatttatttctggggcagtgc
actgcattgctgccccccaactctggaggcagctggtccctggccaggtggtcagtcacg
gacacttgcctgctggctgggcaagaagatggctcggtttacctctataggtactcgggg
gggctccaccccgggtga
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