Notechis scutatus (mainland tiger snake): 113423810
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Entry
113423810 CDS
T09026
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
nss
Notechis scutatus (mainland tiger snake)
Brite
KEGG Orthology (KO) [BR:
nss00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nss04147
]
113423810 (COL18A1)
00535 Proteoglycans [BR:
nss00535
]
113423810 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
nss00536
]
113423810 (COL18A1)
Exosome [BR:
nss04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
113423810 (COL18A1)
Proteoglycans [BR:
nss00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
113423810 (COL18A1)
Glycosaminoglycan binding proteins [BR:
nss00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113423810 (COL18A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Fz
Collagen_trimer
DUF959
DUF6538
DUF1554
Motif
Other DBs
NCBI-GeneID:
113423810
NCBI-ProteinID:
XP_026541148
UniProt:
A0A6J1VKH6
LinkDB
All DBs
Position
Unknown
AA seq
1843 aa
AA seq
DB search
MARVIVSAWLLLVLLCCLANAQGWRNWFWSNSKETTLSPTRAAEAEDETSQDPSTPAATA
SQDAPFESTTDPEPRGKAGTIFTLKQPDFTPTIPVPAAATSPSQEEGRGRNITGVGVEIL
SVAEGIQNLVQLLDEKTTNRTEGTEVPTTTKARASPNPVMEPGSIQNITANLTGDIQTSL
KTKKPEGATKLARLWNKDLALLWNKTRAFPKKPGKPRQGSASFSFSPDGHFSGTMLIFQE
SPEEGQEVAFTPPATRAAWGTFSKKQGILSTAKALKLQSNSSSSSLHAGMPSKVVGTLES
WVLPYVTNPSQPVSKGSGAHLSFKSHPFFKHFGIGVAGAKTNHSRGSVSNSSATNVMDSP
PANNSDSLKFLLTYAVQHSNSSSGLPSFLPGLTPSAGQCLPLPTKLSYCNHLGTKHFRVP
NYLHHGSEEEVWAALHEWEGLLKSRCHRYLEWFLCLLLVPGCNASLPVTPPPCRGFCEAL
KDLCWTHWKEGHLPISCESLPEEDGPYSCVFVNVSAENFSREVGLLELIGDPPPDQITKI
YGPDKSPAYVFRPDANAGQVARYHLPSPFYRDFSLLFYIQPTSDNAGVLFALTDASQSII
YVGVKLSEVKDGKQQIIFYYTEPGSQNSNVAATFSVPSLVNLWTRFALSVRDYNVVLYME
CEEFKTVHLERSSGKIELEEGAGLFVGQAGGADPDKYQGIIVELKIKDNPWAAGYQCVEE
DDDCDTCGGSGSGLDIKQPSSEKESVIPLLSNLPLPTPVTSPAVAKKTVQLEETEYIERP
TYVPASGTKGEKGDPGEKGGRGPKGDPGTGVLSTSGDKGEKGEKGELGVKGSAGFGYPGS
KGQKGEPGTPGLPGPIGPPGPPGTIMRHDGSTVEHPGAMGPPGLPGKEGQPGKDGEPGDP
GEDGKPGDVGPQGFPGTPGEPGLKGEKGEPSVGARGPPGPPGPPGKPGLSSKLDKLTFID
MEGSGFGSELESLRGPKGPPGPPGPPGVPGLPGQPGRFGTNGTDFPGLPGLPGVPGRNGN
SGIPGPPGPLGPPGKDGIPGQPGEKGAPGEPGEMGFPGQKGSQGVPGLPGSPGEPGLAGL
PGPMGPRGFPGPPGPGIAAEFVDMEGSGFPFVSGGPGTRGPEGPPGLPGLPGLPGPPGPK
GDEGIIGLPGLPGEKGYPGLPGLDGRPGLEGFPGPQGQKGEEGGPGSKGEKGQDGIGLPG
PPGPPGPAVYLSSEDKIAPVLPGPEGPKGPKGDSGTPGLQGYPGLKGEKGEPGVITTPDG
TILAAEAKGEKGEPGPSGPMGPAGSPGRYGRKGELGFPGRPGRPGMNGLKGEKGDPADLS
GALGLRGPPGPPGPPGPPGSPVPVYENNAFSDLGPPGPPGLPGYHGQKGEKGEQGIPGPP
GQFPYDLSRFSSTFRGETGEKGDPGMKGEKGESGVGSSAAGLPGPQGYPGLPGPKGESIR
GLPGPPGPQGPPGAGFEGHPGPQGPPGPPGPPGPPSFPGPHRQHISIPGPPGPPGPPGPP
GISDPPSLGVRILATYQNLMSRAHEVPEGQLLFIQDREELYIRVHNGFRRILLEERISIP
GSGLDNEVYERSSSIHYSHGGTASSGSHRPFQPHLPVHARPEYNAYSTAKPWRGDESVVD
PHHLPEQPAVHPPRQGAQQESLDHFFPNNRQTETAPLAVHTHHDFQPALHLIALNTPQSG
SMRGIRGADFQCFQQARQVGLSGTFRAFLSSRLQDLYSIVRRADRSTVPIVNLRDEVLFN
NWENLFSGTEAPFRTGVRILSFDGRDVLRDSAWPQKYMWHGSDSKGRRLTESYCETWRTD
DTVVTGQASSLASGKLLEQKSNSCRNAFIVLCIENSFMTSSKK
NT seq
5532 nt
NT seq
+upstream
nt +downstream
nt
atggctcgagtaatagtcagtgcttggcttctgctggtgctcctctgctgcttagccaat
gcccagggctggaggaattggttttggagcaattcaaaagaaaccacgctgtctcccaca
agagctgccgaggctgaagatgagacaagccaggacccttccacacctgcagctactgcc
agccaagatgccccctttgaaagtactactgatcctgagcccagggggaaagcggggacc
atatttaccctgaagcaaccggactttactccaaccatcccagtccctgcagcagcaaca
tctccttcccaggaagaaggcagaggaaggaatattacaggagtgggagtggagatcctt
agtgtggctgaaggcattcagaatttggttcagcttttggatgaaaagacaaccaacagg
acggaggggaccgaggtacctaccacaaccaaggccagagcatcacccaaccctgttatg
gaaccagggagtatccagaacattactgctaacttaacaggcgacatacagacctccctg
aaaacgaagaagccagagggggcaacaaagcttgctcgtctgtggaacaaagacttggct
cttctgtggaacaagacgcgcgccttcccgaagaaacctgggaaaccccggcaaggtagt
gcctctttctcattttcacctgatggtcatttcagtggcaccatgttgatttttcaagaa
tctccagaagaggggcaagaagttgctttcactcccccagcaacaagggcagcctggggc
actttctccaaaaaacaagggattttgtccactgcaaaagctttgaaattgcagtctaac
agcagcagcagcagcttgcatgcaggaatgccatccaaggtggtgggtactttagagagc
tgggttctgccttatgttacaaatcccagccagcctgtctccaaaggcagcggagcacac
ctcagctttaaaagccaccccttctttaaacattttgggataggagtagctggtgcaaaa
acaaaccattctagaggttcggtttctaattccagtgcaactaatgttatggattccccc
cctgccaataactctgactctcttaagtttctactaacctacgctgtgcaacatagcaat
agcagttcagggcttccttccttcttacctggattgactccatcggctggccagtgcttg
cccttaccgaccaaattgtcgtattgcaaccacctgggcacgaagcatttccgagtgcca
aattatttgcaccatggcagcgaggaggaagtttgggctgctttgcatgagtgggagggg
cttcttaaatctcggtgtcaccgctacttggagtggtttctctgcttgctactggtacct
gggtgcaatgcttctctcccggtcacaccaccaccctgccgggggttttgtgaggccctg
aaagatctgtgttggactcactggaaagaggggcaccttccaatatcctgtgaatctctc
ccagaggaggacggtccatattcatgtgtatttgtaaatgtttcagcagaaaatttcagc
agagaagttggtctcttagagttgattggagatcctccaccagaccagataaccaaaatc
tatggcccagacaaaagtcctgcttacgtgtttagaccggatgccaatgcaggacaagtg
gcacggtaccatctcccaagccccttttacagagacttctcactcttgttctacattcaa
cccacttcagacaacgcaggggtgcttttcgctcttacggatgcctcccagtcaatcatc
tacgttggtgtgaagctttctgaggtgaaagatggaaaacagcagatcatattctactat
acggagcctggctctcaaaattccaatgttgcagccacattttctgtcccttccctggtc
aatctgtggactcgttttgccctcagcgtgcgggattacaatgtggtgctttatatggag
tgtgaagaatttaagacggttcatcttgagaggtcatctggtaagatagagctggaagaa
ggagcaggactttttgtgggacaagctggaggtgcagatcctgataaataccagggcatc
attgtagagttaaaaataaaagataatccttgggctgctggttaccaatgtgtcgaagaa
gatgatgactgtgatacgtgtggtggtagtggaagtggattagacataaagcaaccatct
tctgaaaaggaaagcgtgattcctctgttgtcaaacctgccactgcccacacctgttact
tcccctgccgttgccaaaaaaactgtgcagttagaggagactgaatatattgagaggcca
acatatgttcctgcaagtgggaccaaaggtgaaaagggagaccctggagagaaagggggc
cgtggccccaaaggagatcctgggactggggttttgtcaaccagcggtgataaaggagaa
aagggagaaaagggggagctgggtgtaaagggaagtgcaggctttggctatccaggctct
aaaggacagaaaggtgagcctggtactccagggcttccaggtccaattgggcccccagga
cctcctggaaccatcatgaggcatgatggctctactgttgagcacccaggagccatgggc
ccaccaggacttcctggaaaagagggtcaacctggaaaggatggagagcctggggatcct
ggtgaagatggcaaaccaggtgatgttggtccccaaggattccctgggactccgggtgag
cctggcctgaaaggtgaaaagggagaaccaagtgttggtgcgagaggtcctcctgggccc
ccaggcccacctgggaaacctggattgagttccaaactggataagttgacatttattgat
atggagggctctggttttggaagtgagttggagtctttgcgaggtcctaaaggaccacct
gggcctccaggtcctcctggtgtacctggtttaccgggacaacctggaagatttgggaca
aatggcactgactttccaggcctcccaggccttcctggagttccagggagaaatggcaac
tcaggaatcccaggacctccggggccacttgggcctccaggaaaagatggcatccctggt
caacctggagaaaaaggagcaccgggagaaccaggtgaaatgggcttccctggacaaaag
ggcagccaaggagtgccaggattgccaggctcaccaggtgaacctggtctcgcaggactt
cctgggccaatgggaccccgcggatttcctggtccccctgggccaggcattgcagcagaa
tttgtcgacatggagggctcaggattcccatttgtctctggtggtcctggaactcgtggg
ccagaaggtcctccggggcttccaggcctcccaggacttccagggcctccaggacccaag
ggagatgagggcatcattggactcccgggcttgccaggtgaaaagggatatcctggctta
ccaggattagatggtcgccctggattagaaggtttcccaggaccacaaggacaaaagggt
gaagaaggagggccagggtctaaaggtgaaaagggtcaagatggaataggacttcctggc
cctcctggacccccaggaccagccgtgtacctgtctagtgaagataaaattgcgcctgtt
ttgccaggcccagagggaccaaagggacctaaaggtgactcaggaactccaggtttacaa
ggctatcctggactgaagggtgaaaaaggagagccaggagttataactacgcctgatgga
acaatccttgcagctgaagcaaaaggagaaaagggtgaaccaggcccaagtggacccatg
ggaccagcagggtcacctgggcgatatggacggaagggagaacttggctttcctggaaga
cctggccggcctggtatgaatggattgaaaggagaaaaaggtgacccagcagacttaagc
ggagcgctgggcttaaggggtcctcctggccccccagggcctccaggccccccaggcagt
cctgtaccagtttacgagaataatgcatttagtgatttgggccctccaggacctccagga
ttgcctggctaccatggtcagaaaggagaaaaaggtgaacagggtattccaggacctcca
ggccagtttccttatgacctcagcagattcagctccaccttcaggggagaaacaggggaa
aaaggtgatcctgggatgaaaggcgaaaagggtgaatcgggtgttggatcaagtgctgct
ggacttccaggtccccaagggtatcctggtcttccgggtcccaaaggcgagagcattagg
ggcctgcctggccctccaggcccccaaggacctccaggggcaggttttgaaggacatcca
gggccgcaagggccgcctggccctcctggccctccaggaccaccttctttcccaggtccc
cacaggcaacatatcagtattccaggacccccaggacctccaggacccccaggacctcca
ggcattagtgacccaccttctttgggagtccggattttagcaacctaccagaacctgatg
agcagagctcatgaggtacctgaagggcagctccttttcatccaagatagagaagagctc
tacatccgtgtccacaatggcttcagaagaatccttctggaggaaagaatatccattcct
ggctctggactggacaatgaagtctatgaaaggtcttccagcatccactactctcatgga
gggacagcctcctctggatctcatcgtccatttcagccacacttaccagtacatgcacgt
ccggaatataatgcttattctactgccaaaccttggagaggggacgagagtgtggtcgac
ccacaccaccttcccgagcaacctgccgtccacccacctcgtcagggagcacagcaagag
tccttggaccatttctttcctaacaaccgccagactgagactgctcctttggcagttcac
acacatcatgacttccagccagctctgcatcttatagccctgaacactccccagagcggc
agcatgcggggcatccgaggagctgatttccagtgtttccagcaagctcggcaggttgga
ctgtctggcactttccgagcattcctctcctctcggctgcaagacctctacagcatagtg
cgcagagcagacaggagcacagtgccaattgtcaatctcagggatgaagtgttgtttaat
aactgggagaacctcttctcaggcactgaagctccattcagaactggggttcgcatcctc
tcctttgatggaagggatgtcctgagagactctgcatggcctcagaagtacatgtggcat
ggctccgattccaagggacggcgactgacagagagctactgtgagacatggcggacggat
gacaccgtggtgactggccaggcttcctcgctggcatcaggcaagctgcttgaacagaag
agcaacagctgcagaaacgcctttatcgtcctgtgcatcgaaaacagcttcatgacatct
tccaagaaatag
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integrated database retrieval system
