Notechis scutatus (mainland tiger snake): 113424961
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Entry
113424961 CDS
T09026
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
nss
Notechis scutatus (mainland tiger snake)
Pathway
nss03013
Nucleocytoplasmic transport
nss03015
mRNA surveillance pathway
nss03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nss00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113424961 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
113424961 (DDX39B)
03015 mRNA surveillance pathway
113424961 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nss03019
]
113424961 (DDX39B)
03041 Spliceosome [BR:
nss03041
]
113424961 (DDX39B)
Enzymes [BR:
nss01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113424961 (DDX39B)
Messenger RNA biogenesis [BR:
nss03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
113424961 (DDX39B)
Spliceosome [BR:
nss03041
]
Complex C
Other components
EJC/TREX
113424961 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
113424961 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
113424961
NCBI-ProteinID:
XP_026542702
Ensembl:
ENSNSUG00000009628
UniProt:
A0A6J1VQ50
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MTENDVDNELLDYEDDEVENQAAGEGVDVPSKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPITGQVSVLVMC
HTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTLHEKQVMMFSATLGKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNEVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgacggagaacgatgttgacaatgagctgctggattatgaagatgatgaggtggaaaac
caagcagctggagaaggagtagatgtgccatctaagaaagacgtcaagggatcctatgtc
tccatccacagttctggcttccgtgacttcctattaaaaccagaactattgcgtgccatt
gttgattgtggctttgagcacccttcagaagtgcaacacgagtgtatcccacaggcaatc
ttgggcatggatgtcctgtgccaggccaaatccggcatgggcaagaccgctgtcttcgtt
cttgctacacttcagcagttggaaccaataacaggacaggtttctgtgctggtgatgtgt
cacacgcgtgaactggccttccagattagtaaggaatacgaacggttctccaagtacatg
cccagtgtcaaggtggcagtgttctttgggggcctgtccatcaagaaggatgaagaggtt
ctgaagaagaactgcccccacattgtggtggggaccccgggccgcatcctggctttggcc
cgcaacaagagccttaacctcaaacatatcaagcatttcatcctggacgaatgtgataaa
atgcttgaacagcttgatatgcgtcgagatgtccaggagatcttccgcatgaccctgcat
gaaaagcaggtcatgatgttcagtgctactctcggcaaggaaatccgccccgtgtgccgc
aaattcatgcaagaccctatggagatcttcgtggatgatgagaccaagctgacgctgcac
ggtctgcagcagtactatgtcaaactgaaagacaacgagaagaaccgcaagctgtttgac
ctgcttgatgtgctggagttcaaccaggtggtcatcttcgtgaagtctgtgcagcgttgc
atagctctggctcagctcttggtggagcagaacttcccagccattgccatccataggggc
atgccccaggaagagagattgtcgcggtaccagcagttcaaagatttccaacgtcgtatc
ttggtagccaccaatctgtttggtcgtggcatggatatcgagcgggtcaacatcgctttc
aactacgatatgccagaggattcagacacttatttgcaccgggtggctcgtgctggtcgc
ttcggcacaaaaggtctggcaatcacttttgtgtcagatgagaatgatgctaagatccta
aatgaagtgcaggatcgctttgaagtgaacatcagcgaacttcctgatgaaatcgatatc
tcttcctacattgaacagacccgataa
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integrated database retrieval system
