Notechis scutatus (mainland tiger snake): 113425309
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Entry
113425309 CDS
T09026
Name
(RefSeq) collagen alpha-1(V) chain-like
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
nss
Notechis scutatus (mainland tiger snake)
Pathway
nss04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nss00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
113425309
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
nss00536
]
113425309
Glycosaminoglycan binding proteins [BR:
nss00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113425309
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
113425309
NCBI-ProteinID:
XP_026543187
UniProt:
A0A6J1VJ47
LinkDB
All DBs
Position
Unknown
AA seq
1506 aa
AA seq
DB search
GDIQQLLIVSDHQAAYDYCEHYSPDCDTAVPDVPHSQDPNPDEYYPDGNENLEVEGETYY
YEYPYYEDLDETGKATPTTAQPVETDEVAREVIDTTKSPTPPPTPPLVVEKVQEEVPKVE
DELLIDEYDYGTMTEEYYTPLPYEDLNYEDLDNLDKLPEGGTEAEVPTSTVLTYNETENT
GRVTEGGEDPDRDFSVTEYGEAYYDGYFDRTDSPDIGPGMPANQDTIYEGIGGPRGEKGQ
KGEPAIIEPGMLLEGPPGPEGPAGIPGPPGTMGPAGPMGDPGERGPPGRAGLPGADGLPG
PPGTMLMLPFRFSGGGDAGSKGPLISTQESQAQAILQQARLALRGPAGPMGLTGRPGPMG
PPGGGGIKGESGDMGPQGPRGVQGPPGPAGKPGRRGRAGSDGARGMPGQTGTKGDRGFDG
LAGIPGEKGNRGDPGPSGPPGPHGEDGERVIVTPFVVVFAVKGADGIRGLKGTKGEKGED
GFPGFKGDMGIKGDRGEIGPPGPRGEDGPEGPKGRGGPNGEPGPIGPPGEKGKLGIPGLP
GYPGRLGPKGSIGFPGFLGANGEKGGRGTSGKPGPRGQRGPTGPRGERGQRGITGKPGPK
GNSGGDGPPGPPGERGPSGPQGPTGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPP
GPPGVVGPQGPTGETGPMGERGHPGPPGPPGEQGLPGLAGKEGTKGDPGPAGLPGKDGPA
GFRGFPGDRGLPGPIGPVGLKGNEGPPGPPGPAGSPGERGPAGTAGPIGLPGRPGPQGPT
GPAGEKGTPGEKGPQGPAGRDGIQGPVGLPGPAGPVGPPGEDGDKGEIGEPGQKGSRGDK
GEQGPPGPIGPQGPVGQPGLAGADGEPGPRGQQGLFGQKGDEGSRGFIGLPGPVGLQGLP
GPPGDKGETGDVGQMGPPGPPGPRGPGGPPGADGPQGPTGGIGNPGAVGEKGEPGESGEP
GLPGDSGLPGPKGERGEKGEAGPSGTAGPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGES
GPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGSPGKRGPPGPAGPEGRQGEKGAKGES
GLEGPPGKSGPVGPQGPPGKPGPDGLRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLK
GDSGPKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGGSGTKGEQGIQGPSGPLGPPGPP
GLPGPPGPKGAKGSSGPTGPKGETGHPGLPGPPGPPGEVIQPLPIQSSKRTRRNIDASQL
MDDVNSDNYVDYADGMEEIFGSLNSLKLEIEQMKHPLGTQQNPARTCKDLQLCHPDFPDG
EYWVDPNQGCSRDSFKVYCNFTAGGETCIFPDKKSEGSKMARWPKEQPATWYSSYKRGSL
LSYVDADSNPIGVVQMTFLRLLSASAHQNITYNCFQSVAWHDATVDNYEKAMRFLGSNDE
EMSYDNSPFIRAVFDGCAAKKGYQKTVLEISTPKVEQVPIVDIMFNDFGEASQKFGFEVG
PACFLG
NT seq
4521 nt
NT seq
+upstream
nt +downstream
nt
ggtgacatccagcaactgctcatcgtctcggaccatcaagccgcctacgattactgtgaa
cactacagccccgattgtgacacagctgtgccagatgtgcctcactctcaggacccaaac
cctgacgaatactatccagatgggaacgagaacttggaagttgaaggagaaacttactat
tacgaatacccctactatgaggatctggacgagacaggcaaagcgaccccaaccaccgcc
caacctgtggaaactgatgaagtagccagagaagtgattgacaccaccaagagccccacc
cctccacccaccccgccactggtggtggagaaggtccaggaggaggttcccaaggtagag
gatgaactgctgatagatgaatacgactatgggaccatgacagaagagtactacacgccc
ctcccctatgaagatctcaactacgaagaccttgacaatctcgataagctcccagaaggt
ggcactgaggcagaggtgccaaccagcacagtcctcacctacaatgaaacagagaacaca
ggaagagtaactgaaggcggagaagaccccgacagagatttctccgtcactgaatatgga
gaagcatattatgatggctacttcgacaggactgactcccctgacattggacccggaatg
cctgctaaccaggataccatttatgaagggatcggtggtcctcgaggtgaaaaggggcag
aagggagagccagcaatcattgagccaggcatgcttctcgaagggccgcctggcccagaa
ggcccagccgggattccaggccctccgggaacaatggggccagcggggccaatgggagat
cctggagaaaggggaccacctggacgtgcagggcttcctggtgcggatggtttgccaggc
ccgcctgggacgatgctgatgttgccgttccggttcagcgggggtggagatgcgggctcg
aaaggacccttaatctccacccaggagtcccaagcacaagccatcctgcagcaggccagg
ctggctctgaggggaccagctggcccaatgggactgaccggaagaccaggtcccatggga
cccccaggtggtggaggaatcaaaggtgaatcaggagacatgggacctcagggtccacga
ggcgtccaaggccccccaggtccagcagggaaaccaggacggcggggacgggctggcagt
gatggtgcccgggggatgccaggccaaacgggaacgaagggcgaccgaggtttcgatggc
ctggctgggatccctggagaaaaggggaaccggggtgatcctggcccctcgggcccccca
ggaccccatggtgaagatggtgaaagggtgatagtaacaccttttgtggttgtgtttgcg
gttaagggcgctgacggcatccggggattgaaaggaacgaagggcgagaagggcgaagat
ggcttcccgggattcaaaggcgacatgggcattaaaggtgacaggggtgaaattggccct
cctggtccacggggcgaggatgggccagaaggcccaaaaggccgtggcggccccaatgga
gaaccaggcccaataggtccacctggagaaaaggggaagcttggcattccgggcctgcct
ggataccctggaagacttggccccaagggttccattggatttccggggttcctgggagcc
aacggagagaaaggaggaaggggcacctctggcaaaccgggaccaagaggacaacgaggg
cccacgggcccccgaggagaacgcggccagcgaggcatcacagggaaacccggtccaaag
ggcaattctggtggggacggacctccagggcccccaggtgaaagggggccttcagggcct
caaggaccaacaggatttcctggacccaaaggccctccgggtccaccaggaaaagacgga
ttgccaggccatcctgggcagagaggtgaaacgggcttccaagggaagacaggtccacct
ggacccccaggtgttgttggtccacagggccctacaggagaaacaggcccaatgggtgaa
cgtggccatccgggccctcccggcccccctggggaacagggactccctggcttggctgga
aaagaaggaacaaagggtgacccaggccccgccggtttgcctgggaaagacggcccagca
ggcttcagaggcttccccggagaccgaggactccccggcccaattggacctgtggggctg
aagggcaacgaagggccgccggggcctcctggaccagcgggctctccaggggagcgaggt
cctgcagggacagctggcccaattgggctgccaggacggcctggaccccaagggcccact
ggcccagcgggtgagaaagggaccccgggtgaaaaaggccctcaaggcccagctggacga
gacggcatccagggaccagttgggcttccgggtcctgccggcccagttggccccccaggg
gaagatggagacaagggtgaaattggtgaaccaggacagaaaggaagcagaggggacaag
ggagaacagggtccaccaggtcctattggtccacagggcccagttggccaaccaggtcta
gcaggagctgatggggagcccggcccacgaggacaacaggggcttttcggacagaagggc
gatgaaggatcaagaggatttattggccttccaggaccagttgggttgcagggcttacct
ggacctccaggtgacaagggagaaactggggacgttggccaaatgggtcctccaggcccc
cccgggcccaggggcccagggggaccccccggagctgatgggccacaaggtcctacagga
gggattggaaatccaggagccgttggtgaaaagggagaacctggagaatcaggagaacct
ggacttcccggagactctggactaccaggccctaaaggagagagaggggaaaagggggaa
gcaggcccctctgggactgctggacccccaggccccaaaggtcccccaggagatgatggt
cccaaagggagcccgggtccggttggctttccaggtgatccggggcccccaggtgaatct
ggtccagctggtcaggatggcccaccaggtgataagggagatgatggggaacctggacaa
acagggtcccctggtccaactggagagccaggtccttctggctcgccagggaagagaggc
ccacctggaccagcaggacctgaaggccgacaaggagagaaaggtgccaagggtgaatct
ggattggaaggacctcctgggaaatcaggtccggttggtcctcagggacctccaggaaag
ccaggtccagatggacttcggggaatacctggcccagtgggcgagcaagggcttccggga
tcaccaggcccagacggacctcctggcccgatgggtccacctggtttacctggcctgaaa
ggggattcgggtccaaagggagaaaagggtcatcctggactgatcggtctcattgggcct
cccggcgagcaaggagaaaagggagaccggggactgccagggcctcaaggtggatcgggg
actaaaggagaacagggtattcaaggaccaagtggccctcttggtccacctgggcctcca
gggttgccggggccccccggtccaaaaggtgctaaaggatcttccgggccaacgggtccg
aagggcgaaactggtcaccccggcctaccaggacctcctggtcctccaggagaagtaatc
caacctctccccatccagtcctccaagcggactcggaggaacattgatgccagccagctg
atggatgacgtcaattctgacaattatgtggactatgctgatggcatggaggagatcttt
ggctccttgaactctctgaaactggaaatcgagcagatgaagcaccccttgggcacccag
cagaacccagctcggacctgcaaggacctgcagctttgtcacccggacttcccagatgga
gaatattgggtagacccgaatcaaggctgctcccgggattcctttaaagtttactgtaat
tttaccgctggaggagaaacttgcatcttcccagataagaagtccgaggggagcaaaatg
gcccgttggcccaaagagcagccagccacctggtatagtagctacaagcgagggtctttg
ctctcctacgtggatgctgacagcaaccccattggagtggtacagatgaccttcctgagg
ctcctaagtgcatccgctcaccaaaacatcacctacaactgcttccagtctgtggcgtgg
catgacgccacggtggacaactatgagaaggccatgcgcttcctgggctccaatgatgaa
gagatgtcatacgacaacagccctttcatcagggcggtcttcgatggctgtgcagcaaaa
aagggctaccagaagacggtcttggaaatcagcacccccaaggtagagcaggtccccatt
gtcgacatcatgttcaacgacttcggcgaagcgtctcagaagttcggattcgaggtggga
ccagcgtgcttcctgggctga
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integrated database retrieval system
