Notechis scutatus (mainland tiger snake): 113426563
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Entry
113426563 CDS
T09026
Symbol
PRPF8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
nss
Notechis scutatus (mainland tiger snake)
Pathway
nss03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nss00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113426563 (PRPF8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nss03041
]
113426563 (PRPF8)
Spliceosome [BR:
nss03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
113426563 (PRPF8)
Complex C
U5 SnRNP specific factors
113426563 (PRPF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
113426563
NCBI-ProteinID:
XP_026544722
UniProt:
A0A6J1VVU4
LinkDB
All DBs
Position
Unknown
AA seq
2335 aa
AA seq
DB search
MAGVFPFRGPCPPPPPPPPPPPASLSAEKLQEKARKWQQLQAKRYAEKRKFGFVDAQKED
MPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVPVLY
HITGAISFVNEIPWVIEPVYIAQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYAD
NILDVEPLEAIQLELDPEEDAPVLDWFYDHQPLKDSRKYVNGSTYQRWQFTLPMMSTLYR
LANQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFNDIN
KIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLINPIS
HRHSVKSQEPLPDDDEEFELPEFVEPFLKETPLYTDNTANGIALLWAPRPFNLRSGRTRR
ALDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKATK
FFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRF
GNAFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLSDGLQYIFAHVGQLTGMYRYKYKLMR
QIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLARQF
EGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCW
KANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLT
RLYLKAEQERQHNYLKDGPYITAEEAVAVYTTTVHWLESRRFSPIPFPPLSYKHDTKLLI
LALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMD
LYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQGIN
NLQDVWETSEGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYK
DMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDLATE
VAHPIRLFCRYIDRIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARM
RLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPKC
RTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIV
NKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
ELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFI
DSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRT
DFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEG
LFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGI
FMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSY
KMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYA
RAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKANPAL
YVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTT
KPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQ
IIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLY
DDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVE
VQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLT
ATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKET
GYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLP
GQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVSTHAKVMAENPSWDGEKTIIITCSFTP
GSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQASWN
YNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA
NT seq
7008 nt
NT seq
+upstream
nt +downstream
nt
atggcaggagtcttccccttccggggcccttgcccccccccccctccccccccccccccc
ccgcccgcctccctgtcggcggagaaattgcaggagaaagcccgcaaatggcagcagctg
caggcaaagcgctatgctgagaagagaaagtttggcttcgtggacgcccagaaggaggac
atgccgcctgagcacgtgaggaagatcatccgtgatcacggagacatgaccaacaggaaa
ttccgtcacgacaagcgagtgtatttgggggccctgaagtacatgccccacgcagttctg
aagctcctggagaacatgccgatgccctgggagcagatccgggacgtgcctgtcctctac
cacatcacgggggccatttccttcgtgaacgagatcccatgggtgatcgagccggtgtac
atcgcccagtgggggtccatgtggatcatgatgaggcgggagaagagggaccggcggcat
ttcaagcgaatgcgcttcccgccctttgatgacgaagagccccccctcgactacgcggac
aacatcctggatgtggagcccctggaggccatccagctggagctggacccagaggaagac
gctcccgtcttggactggttctacgaccaccagcccctgaaggatagccgcaagtacgtc
aacggctccacctaccagcgatggcagttcaccctccccatgatgtccaccctctaccgc
ctggccaaccagctcctcacggatctcgtggacgacaactacttctacctcttcgacctg
aaggccttcttcacctccaaggccctcaacatggccatcccgggggggcccaagtttgag
cccctggttcgggacatcaacctgcaggatgaggactggaacgagttcaatgacatcaac
aagatcatcatccggcagcccatccggaccgagtacaagatcgccttcccctacctctac
aacaacctgccccaccacgtccacctcacctggtatcacacccccaacgtggtcttcatc
aaaacggaggatccagacctgccagctttctactttgatcctctcattaaccccatttcg
cacaggcattcggttaagagccaggagccgctgcctgatgacgacgaggagtttgagctg
ccagagtttgtggagccctttctcaaggagacccctctctacacggacaacacggccaac
ggcatcgccctgctctgggcaccgcggccctttaacctgcgctctggccggacccggcgg
gccctggacatccctctggtcaagaactggtaccgagagcactgccccgccgggcagcct
gtgaaggtgcgggtctcctatcagaagctcctgaagtactacgtcctgaacgcactcaag
cacaggccccccaaggcacagaagaagaggtacctcttccgctccttcaaggccaccaag
ttcttccagtccaccaagctggactgggtggaggtggggctgcaggtctgccgccagggc
tacaacatgctcaaccttctcatccaccgcaagaacctcaactacctccacctggactac
aacttcaacctgaagcccgtcaagaccctcaccaccaaggaaaggaagaagtctcgcttc
ggcaacgccttccacctgtgccgggaggtgctgcgtctcaccaagctggtggtggacagc
cacgtccagtacaggctaggaaacgtggacgccttccagctgtccgatgggctccagtac
atcttcgctcacgtggggcagctgactgggatgtaccggtacaaatacaaactcatgagg
cagatccggatgtgcaaagacctcaagcacctcatttattaccgcttcaacacagggcca
gtcgggaagggccccggctgtggcttctgggccccgggctggcgtgtgtggctcttcttc
atgagagggattacccctctgctggagcggtggctcgggaacctcctggccaggcagttt
gaaggccgccactcaaagggggtggccaagacggtcaccaagcagcgggtggagtcccac
ttcgacctggagctgcgggcagcagtgatgcatgacatcctggacatgatgcccgagggc
atcaagcagaacaaggcccggaccatcctgcagcacctgagcgaagcctggcggtgctgg
aaggccaacatcccttggaaggtcccggggctgccgactcccatcgagaatatgatcttg
cggtacgtaaaggccaaagcggactggtggaccaacacggcgcattacaaccgggagcgc
atccgccgcggggccactgtggacaagacggtctgcaagaagaacctgggccgcctgact
cgtctctacctgaaggccgagcaggagaggcagcacaactacctgaaggatggcccatac
atcactgcggaggaggctgtggctgtttacaccaccacggtgcactggctggagagccgg
cgcttctccccgatccctttccctccgctctcctacaagcacgacaccaagctcctcatc
ttggccctggagaggctgaaagaggcctacagtgtgaagtcccgcctgaaccagtcgcag
cgggaggagctgggcctgatcgagcaggcctacgacaacccccacgaggccctttcacgc
atcaagcggcatttgctgacccagcgagccttcaaggaggtgggcatcgagtttatggac
ctctacagccacctggtccctgtctatgacgtggagcccttggagaagattacagatgcc
tacctggaccagtacctgtggtatgaggcggacaagagacgtctcttccctccatggatc
aagccggctgacacagagccccctccgttgctggtgtacaagtggtgccagggcattaac
aacctgcaggacgtgtgggagaccagcgaaggggagtgcaacgtgatgctcgagtcccgc
tttgagaagatgtacgagaagattgatttgacgctgctgaacaggctgctgcgtctcatt
gtcgaccacaacatcgccgactacatgacagccaagaacaacgtggtcatcaactacaag
gacatgaaccacaccaactcctacgggatcatccggggcctgcagttcgcctccttcatt
gtccagtactacgggctggtgatggacctgctggtgctcggcctgcaccgggccagtgag
atggccggccccccgcagatgcccaacgacttcctcagcttccaagacctggccacagag
gtggcccacccgatacgcttgttctgcagatacatcgaccgcatccacatcttcttcagg
ttcaccgcggatgaggccagggacctgatccagcgctacctgaccgagcacccggatcca
aacaacgagaacattgtgggctacaacaacaagaagtgctggcctcgtgacgctcgcatg
cgcctcatgaagcacgatgttaacctgggccgcgctgtcttctgggacatcaagaaccgg
ctgccgcgctccgtcaccactgtgcagtgggagaacagctttgtctccgtgtacagcaag
gacaacccgaacctactctttaacatgtgcggctttgagtgccgcatcctccccaagtgc
cggacaagctacgaagagttcacccacaaggacggcgtgtggaacttgcagaatgaggtg
accaaggagcgcaccgcacagtgtttcttgagagtggacgatgagtccatgcagcggttc
cacaaccgggtcaggcagatactgatggcctcgggctccaccaccttcaccaagatcgtg
aacaagtggaacacggccctgatcggcctgatgacctacttccgggaggccgtggtgaac
acccaggagctgctggacctgctggtgaagtgtgagaacaagatccagactcggatcaag
attggcctgaactccaagatgcccagccgcttcccacccgtggtcttctacacccccaag
gagctcggggggctgggcatgctgtccatgggccacgtcctgatcccacagtctgacctc
aggtggtccaagcagacagacgtgggcatcactcacttccggtccgggatgagccacgag
gaggaccagctgatccccaatctgtaccgctacatccagccgtgggagagcgagttcatc
gactcccagcgggtgtgggccgaatatgccctcaagcggcaggaggccattgcccagaac
aggcgcctgaccctggaggacctggaggactcgtgggacagaggcatcccacggatcaac
accctcttccagaaggaccggcacacgctggcctacgacaaaggctggagagtcaggacg
gatttcaagcagtaccaggtgctgaagcagaaccccttctggtggacccaccagcggcac
gatgggaagctctggaacctgaacaactaccgcacagacatgatccaggcgctgggcggg
gtggagggcatcctggagcacacgctcttcaagggcacctacttccccacctgggagggg
ctcttctgggaaaaagccagcggcttcgaggagtccatgaagtggaagaagctgaccaat
gcccagcgctcgggtctcaaccagatccctaaccggaggttcaccctctggtggtctccc
accatcaaccgggccaacgtgtacgtgggcttccaggtgcagctggacctgacgggcatc
ttcatgcacggcaagatccccacgctgaagatctccctgatccagatcttccgagctcac
ttgtggcagaagatccacgaaagcatcgtcatggacctctgccaggtgtttgaccaggag
ctggacgccttggagattgagacggtgcagaaggagaccatccaccccaggaagtcttac
aagatgaactcttcctgcgcggacatcctcctcttcgcctcctacaagtggaacgtctcc
cggccctccctgctggcagactccaaggacgtgatggacagcaccaccacccagaagtac
tggatcgacatccagctgcgttggggggactacgactcacacgacatcgagcgctacgcc
cgagccaagttcctggactacacgacggacaacatgagcatttacccctcccccaccggg
gtcctcattgccattgacctggcctacaacctgcacagcgcctacgggaactggttcccc
gggagcaagccgctgatccagcaggccatggccaagatcatgaaggccaaccccgccctg
tacgtgctgagggagcggatccgcaagggcctgcagctttactcctcggagcccaccgag
ccctacctctcctcgcagaactacggggagctcttctccaaccagatcatctggtttgtg
gacgacaccaacgtctacagggtcaccatccacaagacctttgaaggaaacttgaccacg
aagccgatcaacggggccatcttcatcttcaaccctcggaccgggcagctcttcctgaag
atcatccacacatccgtctgggctgggcaaaagcgtttgggccagctggccaagtggaag
acggcggaggaggtggcggctctgatccgctccctgccggtggaggagcagcccaagcag
atcatcgtcacccggaagggcatgttggaccccttggaggtgcacctgctggacttcccg
aacatcgtcatcaagggctcggagctgcagctgcccttccaggcctgcctgaaggtggag
aagtttggagatctcatcttgaaggcgaccgaaccccagatggtcctcttcaacctgtat
gatgactggctgaagaccatctcctcctacacggccttttcccgcctgatcctcatcctg
cgggcgctgcatgtgaacaacgatcgggccaaagtcatcctgaagccggacaagaccacc
atcaccgagcctcaccacatctggcccaccttgaccgacgaggagtggatcaaagtggag
gtgcagctgaaggacctgatcttggccgactatggcaagaagaacaatgtgaacgtggct
tccttgacccagtccgagatccgggacatcatcctcggcatggagatctcggccccctcc
cagcagcggcagcagatcgcggagatcgagaagcagaccaaggagcaaagccagctgacg
gccacccagacgcggacagtcaacaagcacggcgacgagatcatcacctccaccaccagc
aactacgagacccagaccttctcctccaagaccgagtggcgggtcagggccatctctgca
gccaacctgcacttgcgcaccaaccacatctacgtctcctcggacgacatcaaagagacc
ggctacacctacatcctgcccaagaacgtcctgaagaaattcatctgcatctccgacctg
cgagctcagattgccgggtacctctatggggtgagtcccccagacaacccccaggtgaag
gagatccggtgcattgtgatggtgcctcagtggggaacccatcagaccgtccacctcccc
ggccagctgccccagcatgagtacctcaaggagatggagcccctggggtggattcacacc
cagcccaacgagtctccgcagctctccccgcaagacgtcagcacccacgccaaggtcatg
gccgagaacccctcctgggacggggagaagaccatcatcatcacctgcagcttcactccg
ggctcctgcaccttgacggcctacaagctgacccccagcggctacgagtggggccggcag
aacacggacaagggcaacaaccccaagggctacctgccctcccactacgagcgggtgcag
atgctgctctcggaccgcttcctgggcttcttcatggtgccggcccaggcctcctggaac
tacaacttcatgggcgtccggcacgaccccaacatgaagtacgagctgcagctggccaac
ccgaaggagttctaccacgaggtccatcgcccctcccacttcctcaacttcgccctcctg
caggagggggaggtctactcagcggaccgggaggatctctacgcctag
DBGET
integrated database retrieval system
