Notechis scutatus (mainland tiger snake): 113427011
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Entry
113427011 CDS
T09026
Symbol
POLR2A
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
nss
Notechis scutatus (mainland tiger snake)
Pathway
nss03020
RNA polymerase
nss03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nss00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
113427011 (POLR2A)
09124 Replication and repair
03420 Nucleotide excision repair
113427011 (POLR2A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nss03021
]
113427011 (POLR2A)
03400 DNA repair and recombination proteins [BR:
nss03400
]
113427011 (POLR2A)
Enzymes [BR:
nss01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
113427011 (POLR2A)
Transcription machinery [BR:
nss03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
113427011 (POLR2A)
DNA repair and recombination proteins [BR:
nss03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
113427011 (POLR2A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
RNA_pol_Rpb1_3
Motif
Other DBs
NCBI-GeneID:
113427011
NCBI-ProteinID:
XP_026545261
Ensembl:
ENSNSUG00000016908
UniProt:
A0A6J1VQB4
LinkDB
All DBs
Position
Unknown
AA seq
1798 aa
AA seq
DB search
MHGGAPSGDSACPLRTIKRVQFGILSPDEMKRMSVTETGIKYPETTEGGRPKLGGLMDPR
QGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLGKTMKVLRCVCFFCSKLLVDS
NNPKIKDILTKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGH
GGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFILGMDPK
YARPEWMICTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAH
VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF
SARTVITPDPNLSIDQVGVPRSIAANMTFAEIVAPFNIDRLQELVSRGNSQYPGAKYIIR
HNGDRIDLRFHPKSSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWST
FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT
LTAVRKFTKRDVFLERVSVSFVRPVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDK
TGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFI
KDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESV
MVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFKFDYTNERALR
RTLQEEMVKDILSNAHIQNELEREFEKMKDDREVLRVIFPTGDSKVVLPCNLLRMIWNAQ
KIFHINTRLPSDLHPIKVVEGVKELSKKLVIVNGDDPLSKQAQENATLLFNIHLRSTLCS
RRMIEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAG
VSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTA
NTAIYYDPNPQNTVVAEDQEWVNVYYEMPDFDVTRISPWLLRVELDRKHMTDRKLTMEQI
AEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESN
MLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKD
VDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHL
MAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCF
DLLLDAEKCKFGMEIPTNITGLGVGGPTGMFFGSAPSPMGGVSPATTPWNQGATPAYGAW
SPSVGSGMTPGAASFSPSAASDASGYSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSP
SYSPTSPAYEPRSPGVYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYS
PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP
SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSP
TSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPRYTPPSPTYTPSSPSYSPSSPS
YSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPT
SPVYTPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDEEN
NT seq
5397 nt
NT seq
+upstream
nt +downstream
nt
atgcacgggggcgcgccctccggggacagcgcgtgcccgctgcgcaccatcaagcgcgtg
caattcggcatcctcagcccggatgagatgaaacggatgtcggtgaccgaaacgggcatc
aagtacccagagaccacggaaggtggtcgccccaaactcggagggctgatggatcctcgc
cagggggtcatcgaaaggaccgggcggtgccagacgtgcgcaggcaacatgaccgaatgt
cccggccattttggccacatcgaattggccaagccggtcttccatgtcggctttttagga
aaaaccatgaaagtccttcggtgcgtttgtttcttttgctccaaactgctggtcgactcg
aacaatccgaaaatcaaggatatcttgactaaatccaaaggccagccgaagaagcggttg
acccacgtctacgatctctgcaaagggaagaacatctgtgagggaggagaagagatggac
aacaaatttggggtggagcagcccgaaggcgacgaggacctcaccaaggaaaagggccac
gggggctgcgggcgctaccagccgaggattcgccgctcgggcctggagctgtacgccgag
tggaagcacgtgaacgaggactcgcaagagaagaagatcctgctcagccctgaacgggtc
cacgaaatcttcaagcggatctcggacgaggagtgcttcatcctgggcatggaccccaaa
tacgcccggccggagtggatgatatgcaccgtgctccccgtccctccgctgtccgtcaga
ccggccgtcgtcatgcaaggctcggccaggaatcaggacgacttgactcacaagctggcc
gacattgtcaaaatcaacaaccagttgcggcgaaacgagcagaacggggcggccgctcac
gtcatcgcggaagacgtcaaactcctccagttccatgtggccaccatggtggacaatgaa
ctgcccgggctgccccgggcgatgcaaaaatcgggccggcctctgaagtccttgaaacag
cgtctgaaagggaaggaaggccgtgtgcgagggaacctgatgggcaaacgggtggatttc
tccgcccggacggtcatcacgcccgatcccaacctctccatcgaccaggtgggcgtgcca
cgctccatcgctgccaatatgacctttgccgagatcgtggcacctttcaacattgacagg
ctgcaggagctggtgagccgagggaacagtcagtatcccggagccaagtatatcatccgg
cacaacggagacaggattgatctccgcttccacccaaagtccagcgacctgcacttgcag
attgggtacaaggtggagcgacacatgtgtgacggagacatcgtcattttcaaccgccaa
ccgacgctgcacaaaatgtccatgatgggtcaccgagtccgcatcctgccctggtccact
ttccgactcaatctcagtgtgaccaccccatacaacgctgactttgacggcgacgaaatg
aacctccaccttccccagtcgttggagacccgggcggagatccaggaactggccatggtg
ccccgtatgatcgtcacgccccagtccaacaggcccgtcatgggcatcgtgcaagacacg
ctgacagccgtccgcaagttcaccaagagggacgtcttcctggagagggtgagcgtctct
tttgtccgtcccgtcatcgagaaagcccacaacaatgagctggagcccacccctggcaac
accctgcgccagacctttgagaaccaggtcaaccgcatcctgaacgacgcccgagacaag
accggctcctctgcccagaagtccctctcggagtacaacaacttcaagtccatggtggtc
tcaggggccaaaggctccaagatcaacatctcccaggtcatcgccgtggtggggcagcag
aacgtggaagggaaacgcatccctttcggcttcaagcatcgcaccctgccccacttcatt
aaagacgactacgggccggagagcaggggcttcgtggagaattcgtacttggccggcctg
acccccaccgagttcttcttccacgccatgggaggccgagaagggctgatcgacacggct
gtcaaaacagccgaaacgggttacatccaacgtcggctgatcaaatccatggagtcggtc
atggtgaagtacgatgccaccgtccgcaactccatcaaccaggtggtgcagctgcgttac
ggcgaggatgggctggccggagagagcgtggagttccagaacctggctaccctcaagcct
tccaacaaagcttttgagaagaagttcaagttcgattacaccaacgagcgggctctgcgc
cgcaccctgcaagaggagatggtgaaggacatcctcagcaacgcccacatccagaacgag
ctggagagggagtttgagaagatgaaggacgaccgggaggtgttgagggtcatcttcccc
acgggagacagcaaggtcgtcctcccctgcaacctgctgcgcatgatctggaacgctcag
aaaattttccacatcaatacgcgcctcccctctgacctgcaccccatcaaagtggtggaa
ggcgtgaaggagctgagcaagaaactggtgatcgtgaacggcgacgaccccctgagcaag
caagcccaggaaaacgccaccctgctcttcaacatccacctgcgttccaccctctgcagc
cgtcgcatgatcgaggaattccggctgagcggggaggccttcgactggctgctgggagaa
attgaatccaagttcaaccaggccattgcccatcctggtgagatggtgggggccttggcg
gcccagtccctgggggaacccgccacccagatgaccctcaacaccttccattatgctgga
gtctccgccaaaaatgtgaccctgggggtgcctcggctgaaggaattgatcaacatttcc
aaaaagcccaaaaccccttctctgactgtcttcctcctgggacagtccgcccgggatgct
gagagggccaaggacatcctttgccgcttggagcacaccacccttcgcaaggtgaccgcc
aacacggccatctactacgaccccaaccctcagaacaccgtggtggctgaggaccaggag
tgggtgaacgtctactacgagatgcccgacttcgatgtcacccgcatctccccttggctg
ctgagggtggagttggaccgcaagcacatgacggaccgcaagctcaccatggagcagatt
gccgagaagatcaatgccggctttggagatgacctcaactgcatcttcaacgacgacaac
gccgagaagctggtgctgcgcattcggatcatgaacagcgacgagaataagatgcaggag
gaggaagaggtggtcgacaagatggacgatgatgttttcctgcgctgcatcgaatccaac
atgctgacagacatgacccttcaaggcattgagcaaatcagcaaggtgtacatgcacctg
ccccagaccgacaacaagaagaaaataataatcacggaagacggcgagttcaaagccctc
caggagtggatcctggaaaccgatggcgtgagcctcatgcgtgtgctgagtgagaaagac
gtggaccccgtgcgcaccacctccaacgacattgtggagattttcacggtgctgggaatt
gaggcggtgaggaaggctctggaacgggagctgtaccacgtcatctccttcgacggctcc
tacgtcaactaccgccacttggccctgctctgcgacaccatgacctgtcgcgggcacttg
atggccatcacgcggcacggcgtcaaccgccaggacacggggccactcatgaaatgctcc
ttcgaagagacggtcgacgtcttgatggaggcggccgcccacggcgagagcgaccccatg
aaaggggtctcggaaaacatcatgctggggcagctggcccccgcgggcaccggttgcttc
gacctgcttttggacgcggagaaatgcaaatttggcatggagatccccaccaacatcact
gggctgggcgttgggggacctacgggcatgttctttggctctgcacccagccccatgggt
ggggtgtcccctgccacaaccccgtggaaccaaggtgccacgccagcctacggcgcctgg
tctccgagtgtggggagcggaatgacgcccggggctgccagtttctcgcccagtgcagct
tccgatgccagcggttacagccccgggtattcccctgcctggtcgcccaccccaggctcc
cccggctctccgggaccttccagcccttacattccgtctccagggggcgccatgtctccc
agctactccccaacctctcccgcctatgagccgcgctcgcccggggtgtacaccccgcaa
agccccagctacagccccacctccccttcctacagccccacctctccgtcatactctccc
accagcccgaattacagccccaccagccccagttacagtcccacctccccgagttactct
ccaacatcgcccagctacagcccgacatcgcccagctacagcccaaccagtcccagttac
agcccgacgtcgcctagttattctccaaccagccctagctacagcccaaccagccctagc
tacagcccgacatcgcccagctacagcccaaccagtcccagctacagcccaacatcccct
agttattctccaaccagccctagctacagcccaacatcacccagctacagcccaacttct
cccagctacagcccaacctctcctagctacagccccaccagccctaattacagcccgacc
tctccaaactacaccccgacttctcccagctacagcccaacttctcccagctacagcccg
acgtctccaaactacaccccgacgtctccaaactacagcccaacttctcccagttactcc
ccgaccagcccttcctacagccccacctcgcccagctactcccccaccagcccccgctac
acccccccctcccccacctacaccccctcatcgcccagctacagccccagctcgcccagc
tacagtccaaccagccccaagtacaccccgaccagcccgtcctacagccccagctctccg
gaatacaccccgaccagccccaagtacagcccgaccagccccaagtacagcccgacttcg
cccacctacagcccgaccacaccgaaatacagcccgaccagccccacctactcgcccacg
tcgccggtctacaccccaacctcccccaagtacagcccgacctcgcccacctactcgccc
acctcccccaaaggctccacctactccccaacctctcccggctacagccccacgtcgccc
acctacagcctcaccagcccggccatcagtccggacgacagcgacgaagagaactga
DBGET
integrated database retrieval system
