Notechis scutatus (mainland tiger snake): 113427039
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Entry
113427039 CDS
T09026
Symbol
SYMPK
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
nss
Notechis scutatus (mainland tiger snake)
Pathway
nss03015
mRNA surveillance pathway
nss04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
nss00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113427039 (SYMPK)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
113427039 (SYMPK)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nss03021
]
113427039 (SYMPK)
03019 Messenger RNA biogenesis [BR:
nss03019
]
113427039 (SYMPK)
Transcription machinery [BR:
nss03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
113427039 (SYMPK)
Messenger RNA biogenesis [BR:
nss03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
113427039 (SYMPK)
U7-dependent histone pre-mRNA processing factors
113427039 (SYMPK)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_MROH2B_C
PDS5
Cnd1
Adaptin_N
Motif
Other DBs
NCBI-GeneID:
113427039
NCBI-ProteinID:
XP_026545288
Ensembl:
ENSNSUG00000017317
UniProt:
A0A6J1VXE6
LinkDB
All DBs
Position
Unknown
AA seq
1242 aa
AA seq
DB search
MANTSGVGDPGLLRMSIASQFFSGEETAEIDTMTTSEKVVDLLNQAALIVNESKITILKQ
VQELIINKDPTLLDNFLDEIIAFQADKSVEVRKFVIGFIEEACKRDTELLLKLIANLNML
LRDENVNVVKKAILAMTQLYKVALQWMVKSRVINEMQEACWEMVSAMANEIIQLLDSDND
GIRTHAIKFVEGLIITLSPRMPESEVPKRHESDVSLDRVPTDHTYIKYNALWEEGKAALE
QLLKFMVHPAISSINLTAALGSLASIARQRPMFMSEVIQAYETLHANLPPTLAKSQVSSV
RKNLKLHLLSVLKHPASVEFQAQITTLLMDLGTQQAEITRNMPNLKDLRKRPRDESDPTL
KKMKMEPPLEEDDEDKDLEQGPVPTPKPSIQSITQSDIDITAEFLQPLLTPDNVANLVLI
SMVYLPENMPASFQATYTPVESAGTEVQIKHLARLMATQMTAGGLGPGVEQIKQAKEVIK
GEKIVKPEGVLIKRRLSTLNLGQAISVVGAASPASPSTEVPQAKRRPEPIIPSTQPRMVG
ASGRKKIFRLSDVIKPLTDAQKEKLKMAAVKRILRSEKAVAYSGAAHARVKILSSLVTQF
EVPLKQEILAFILDDIRNRLDLAFAWLYQEYNTYLSQYPTGSLNNYDECLIGLLSGLQEK
PDQKDGIFTKVVLEAPLITESALEVIRKYCEDESRTYLGMSTLRDLIFKRPSRQFEYLHV
LLDLSSHEKDKVRQQALLFIKRMYEKDHLREYVEKFALNYLQLLVHPNPPSVLFGADKDT
EVAAPWTEETIKHCLYLYLALLPQNHKLIHELASVYTEAIADIKRTILRVIEQPIRGMGM
NSQELLKLVKNCPKGAETLVTRCLHSLTDKVPPSPELVKRVRDLYNKRLPDVRFLIPVLN
GLEKKEVIQALPKLIKLNPIVVKEVFNRLLGTQHGEGNSTVSPLNPGELLIALHNIDSTK
CDMKSIIKATNLCFAEHNVYTSEVLAVVMQQLMEQNPLPMLLMRTVIQSLTMYPRLGGFV
MNILTRLILKQVWKYPKVWEGFIKCCQRTKPQSFQVILQLPPQQLSAVFEKCPELREPLL
AHVRSFTPHQQAHIPNSTMAILEATIKQETEGKELQPPEEGRGGPAPSRTKTLRREREED
TEPQPLLPRVSQDMIALRLAQEKALKRQLEEEQKLKQQQQQQPPRPAASPTPPPAEELVD
LPEDVPEAETPTIFISMQEEEESFGGENSLLDFSLEGPWPNK
NT seq
3726 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacacaagtggggtgggagaccctggccttttacggatgagcattgcctcccag
ttcttttcgggagaggaaacggcggagattgacaccatgaccacgtcggagaaagttgta
gatttgctgaatcaagctgccttaatagtcaacgagtctaaaatcacaatccttaaacaa
gtccaggaattgattataaacaaggaccctaccttgctggataacttcctggatgaaatc
atcgctttccaggcagataagtctgtcgaggtgcggaaatttgtaatcgggttcatagag
gaagcctgcaaacgggacacggagctattgctcaagctcattgccaacctgaatatgctg
ctgagggatgagaatgtcaacgtggtgaagaaggccatcctggccatgacccagctctat
aaagtggccctacagtggatggtgaagtccagggtgatcaacgagatgcaggaagcctgc
tgggagatggtctcggccatggccaacgaaatcatccagctgctggactccgacaacgac
ggcatacgcactcacgccatcaagttcgtggagggcctgatcatcaccctctcaccccgc
atgccagaatcggaggtgcccaagcgacacgagagcgacgtcagcctcgaccgggttccc
acggaccacacgtacatcaaatacaatgccctgtgggaggaagggaaggcagcgctcgag
cagctgctgaagttcatggtacacccagccatctccagcatcaacctgacagcagccctg
ggctccctggcctccatcgcccgacagcggccgatgttcatgtcggaggtgatccaggcc
tacgagacactgcacgccaacctccctcccacgctggccaagtcccaggtgagcagcgtc
cgcaagaacctcaagctccacttgcttagcgtcctgaagcacccggcctccgtcgagttc
caggcccagatcaccaccctgctgatggacctgggcacccagcaggccgaaatcacccgc
aatatgcccaacctgaaggacttgcgcaaacggccccgggacgagagcgaccccactttg
aaaaaaatgaagatggagcccccccttgaggaggacgacgaggacaaagacctggagcag
gggccggtgcccacccccaagccctccattcagagcatcacgcagtccgatatagacatc
acagccgagtttctgcagcctcttttgactcccgataacgtggccaacttggtgctcatc
agcatggtgtacctcccagagaacatgccggcatccttccaagcgacgtacacaccggtg
gaatccgctgggaccgaagtccagatcaagcacttggcacggctgatggccacccagatg
accgcaggtggcctgggcccgggagtggagcagatcaaacaggccaaagaagtcataaaa
ggagagaagatagtcaagccggaaggcgtcttgatcaagcgacgcctttccacccttaac
ctcggccaggccatctccgtggtgggagctgcgagcccggcctctccctccacggaagtc
ccgcaggccaagcggcgcccggaacccatcattccttccacccagccaaggatggtgggt
gccagcggccgcaagaagatcttccgcctgagtgacgtgatcaagcctctcacggacgcc
cagaaggagaagctcaaaatggcagctgtcaagcggatcctacgctccgagaaggccgtg
gcttacagtggggcggcgcatgcccgggtgaagatcctttcctccctggtgacccagttt
gaggtccctctgaagcaggagatcttggccttcatcctggacgacatccggaaccggctg
gacctggccttcgcctggctgtaccaggagtacaacacttacctgagccaataccccacc
ggctccctcaacaactacgatgaatgtctcatcggcctcctctccggcctgcaggagaag
cccgaccagaaggatgggatcttcaccaaggtggttcttgaagcccccctgatcacggag
agcgccctggaagtcatacgcaagtattgtgaagatgagagccggacatatttgggcatg
tcgaccctccgcgatctgatttttaagcgcccatccaggcagtttgaatacctgcatgtc
ctgctggacctcagctcccacgagaaggacaaggttcgtcagcaggccctcctcttcatt
aagcggatgtacgagaaggaccacctgcgggaatatgtggagaaatttgccctgaattac
ctgcagctgctggtccaccccaaccctccttccgttctctttggcgccgataaagataca
gaggtggccgccccctggaccgaggagaccatcaagcactgcctctacctctacttggcc
ctccttccccagaaccacaagctgatccacgaactggcgtctgtctacacggaggccatt
gcggacatcaagcgcaccatcctccgggtgatcgagcagccgatccgtgggatgggcatg
aattcccaggagctgctgaagctggtgaagaactgccccaaaggggccgagactctggtg
acccgttgcctccacagcctgaccgataaagttcctccatctccagagctggtgaaacga
gtccgagatctctacaacaaaaggctcccggatgtccgattcctcatcccggttctcaac
ggcttggaaaagaaagaggtgatccaggcgttgcccaaactcatcaagctgaatcccatc
gtggtgaaggaagtgtttaaccggctcctgggaacccaacatggtgaaggaaattcgacg
gtttcccccctcaaccccggggagctgttgatcgccctgcacaacattgattccaccaag
tgtgacatgaagtccatcatcaaagcgaccaacctgtgttttgctgagcacaacgtctac
acctcggaggtgctggccgtggtgatgcagcagctgatggagcagaacccgctgcccatg
ctcctcatgcggacggtcatccagtccctgaccatgtacccccgcctgggcggctttgtc
atgaatatcctcacgcgcctcattttgaagcaggtgtggaagtaccccaaagtctgggag
ggcttcatcaaatgctgccagcgcacgaagccccagtccttccaggtcatcctccagtta
cccccacagcagctcagtgccgtctttgaaaaatgcccagagctgagagagcctctgctg
gctcatgtccgctccttcaccccccatcagcaagcccacatccccaattccaccatggcc
atcctggaagccaccatcaaacaggaaacggaaggcaaagagcttcagcccccggaggaa
gggaggggcggcccggctccctccaggacgaagaccctgagaagagagagggaggaggac
acggagccccagcccctgctgcctcgggtgtcccaggacatgatcgccctgcgcctggcc
caggagaaggccctgaagcgccagctggaggaggagcagaagctcaagcagcagcagcag
cagcaaccgcctcgccctgccgcctcgcccacccctccccccgccgaggaattggtggac
ctcccggaagatgtgcccgaagccgagacccccaccatcttcatcagcatgcaggaggag
gaagagagctttggcggggagaactccctgctggatttcagcttggaagggccctggccc
aacaag
DBGET
integrated database retrieval system
