Notechis scutatus (mainland tiger snake): 113427450
Help
Entry
113427450 CDS
T09026
Symbol
NUP188
Name
(RefSeq) nucleoporin NUP188 homolog isoform X1
KO
K14311
nuclear pore complex protein Nup188
Organism
nss
Notechis scutatus (mainland tiger snake)
Pathway
nss03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
nss00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
113427450 (NUP188)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nss03019
]
113427450 (NUP188)
Messenger RNA biogenesis [BR:
nss03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
113427450 (NUP188)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup188_N-subdom_III
Nup188_N
Nup188_SH3-like
Motif
Other DBs
NCBI-GeneID:
113427450
NCBI-ProteinID:
XP_026545738
Ensembl:
ENSNSUG00000008065
ENSNSUG00000008067
UniProt:
A0A6J1VYQ0
LinkDB
All DBs
Position
Unknown
AA seq
1735 aa
AA seq
DB search
MAAGGLSARSSRELWTILLGRSALREPAQIAEELNKHWQRLLEGLCYYKPPSSNSAEIVK
ADKNVPASLKELGLRVSKFLGLDEEQSVQLLQCYLQEDYRGTRDSLKTVLQDDRQSQTLL
LKIADYYYEERFCILRCVLHILTYFQDERHPYMVPYSQCMEKLDKELVPNYRKQFEELYK
AEAPTWETHGSLMTERQVSRWFVQCLREQSMLLEIIFLYYAYFEMTPEELLTFAKMFKDQ
GFGSRQTNRHLVDESMDPLVDRIGYFSALILVEGMEIDSLHERLLDDRKEEHKFAGNGQI
RQEMDRLLLTLGDVPHHAPVLLAWALLRHTLSTDGSSGVIRRMGSTAIQMNVFQYLTKLL
RAISSEGNCISSTASMCVYGLLSFVLTSLELHTLGNQQDIIDTACEVLASSSIPPLFWKT
EPTAGLGIILDSVCGMFPHLLSPLLQLLTALVSDKSTAKKVYTFLDKMSFYIELYKHKPA
DVISHEDGTLWRRLNPKLLYPLGAGQTNLRIPQGTVGQVILDDRAYLVRWEYSYSSWTLF
TCEIEMLLHVVSTADVLQHCQRVKPIIDLVHKVISTDVSIADCLLPITSRIYMLLHRLTT
VISPPVDIIASCVKCLTVLASRMPAKVWTDLHHTGFLPFVANPVSNMSRMISAEGMNAGG
YGNLLMGIEQPQGEYGVTISFLNLVITLVRGQLGSTQSQGLVPCIVFVLKEMLPNYHKWR
YNSHGVREKIGYLILQLIHAILNLCPEMDPRSSSAPSLQSLCIFSLANTEAGQAVISIMG
IGVDTIDMVMASQSCSDGESQGQLLIQTVKLAFSVTNNVIRLKPPSSVVSPLEHALTQHG
AHRNNLIAVLAKYIYHKHDPALPRLAIQLLKRLATVAPMSVYACLGSDASAIRDAFLTRL
QSRIEDMRIKVMILDFLTVAVETQPGLIELFLNLEVKDGSEGCKEFSLGEWSCLHVVLEL
IDSKQQERYWCPPLLQRATVAFLHALWQDRRDSAMLVLRNKPKFWGNLTNPLFGTLPPPS
ETSELSVLETCALIMKIICLEIYSVVKGSLDQSLKDTLKKFSAEKRFAYWSGYVKSLAFH
VGETEGSGCASVTEYQMLISAWRMLLVVSTSHADIVNLTDAEVQQLFVDVLSGTKALLLV
PTSGCCLQLGSMLCTLLLILLRQWKSKLGSADEIIDSLTQILDGVLQADQQMMEKTKAKV
FSALITVLQMKETKASEIPQYSQLVLSVCETLQEEFIALFDHTRHCLTSGDSLEDKDSME
TDDISRHKQKDQRDGVCVLGLHLAKELCEVDEEGDSWLQVTRSLPLLPTLCTTLEVSLRL
KQNLHFTEASLHLLLTLAKTQQGAAAVATAGILHSICLPLLSVYQLTSNGGGQVSVSTRR
SLDGPAWPGVYRLSVSLMERLLKTLRYNFLTDALDFVGVHQERILQCLNAVRTVQSLACL
EEADHTVGFLLQLSIFMKEWHFHLPQLLRDVQVNLCYLCQACTLLLHSRKMLQHYLQAKN
GESIPSAVLPRLQRTPPVSAKLASPESEAAEQKALCTVQYSLLKILSKCLAALRHFTPDI
CQILLDQSLDLAEYNILFMLSFTTPAFDSEAAPSFGTLLATINVALNMLGELDKKKDPFS
LAAGPSPQQEGNKTLKPLLMFTMENCFYLLISQAVRYLKDPAVHSRDKQRMKQELSSELS
TLLSSLSRYFRRGGPSSPGGALLPPPQGKPSSKLGPEGQEPLFQLVHTFVRHVQR
NT seq
5208 nt
NT seq
+upstream
nt +downstream
nt
atggcggccggcgggctgtcagcgaggagcagcagagaattgtggaccattcttttggga
agatcagctttgagagaaccggcacagatcgcagaagagttgaataaacattggcagagg
ttgcttgaaggactttgttactacaaaccacccagttccaattcagcagagatcgtgaaa
gctgataaaaacgtccctgcttcgttgaaggaactgggactcagagtcagcaagtttttg
ggtttggatgaggagcaaagtgtgcagctcttacagtgttaccttcaagaagattataga
gggactagagactcgctaaagaccgtgctccaagatgacaggcagagccaaactctgcta
ctgaagattgctgattactactatgaggaaaggttttgtattcttcggtgtgttcttcac
atcctcacttatttccaggatgagaggcacccttacatggtcccatattcgcagtgtatg
gaaaagctggataaggagctggttcctaattatcggaaacaatttgaagagctgtataaa
gcagaagcgcctacatgggaaacacatggaagtctgatgacggagcggcaagtgtctcgc
tggttcgtgcagtgcctccgcgaacagtccatgctgctggagatcatcttcctctactac
gcctattttgagatgaccccggaggagctgctgacgtttgccaagatgttcaaggaccag
ggctttggttctcgccagaccaaccggcacctggtggatgaaagcatggaccccctggtg
gatcggattgggtacttcagtgctctaattctcgtggaaggcatggaaatcgactcctta
catgaacgtttgttggatgacaggaaggaggaacataagttcgctggcaatggacagatc
cgccaggaaatggaccgcctgctactgaccctgggggacgtcccccatcacgcccccgtc
ctcttggcctgggctttactccggcacacactgagcactgatgggtcaagcggggtgatc
cggcggatgggaagcaccgccatccaaatgaacgtctttcagtatttgaccaagctgctc
cgagccatcagttctgaaggaaattgtatttccagcaccgcctccatgtgcgtttacggc
ctcctgtccttcgtgctaacttccctggagctgcacaccctcggcaatcagcaggacata
attgacactgcgtgtgaagttttggcttcttccagcattcctcccttgttctggaaaacg
gaaccaacagcaggactgggcattattttggatagcgtgtgtggcatgtttccacacctc
ctctctcctcttcttcagttactcactgcgcttgtttcagacaagtcaacggcaaaaaag
gtttacacgtttttggacaagatgtcattctatatcgagctttataagcacaagccagca
gatgtcatctctcacgaagacgggaccctctggaggaggctgaaccccaaattgctgtac
ccccttggggcaggtcaaaccaaccttcggatccctcaaggaacggttgggcaggtgata
ctggacgaccgggcctatttggtacgctgggagtattcttacagcagctggacactcttc
acctgcgaaattgagatgctgttgcatgtggtgtcaacggctgatgtcctccagcattgc
cagagggtcaagcccatcatcgacctggttcacaaagtcatcagcaccgatgtgtccatt
gccgattgcctcctgcccatcacctcccggatctacatgctgctgcacaggttaaccact
gtgatttctcccccggtcgacatcatcgcctcttgtgtcaaatgtttgacggtcctggct
tcccggatgcctgccaaggtctggactgatctgcatcatacaggctttttaccttttgtg
gcaaatccggtttctaatatgagtcgcatgatcagcgcggagggaatgaacgctggaggc
tatgggaatctgctgatgggcatcgagcagccccaaggagaatatggcgtgacaatctcc
ttcctgaatttagtcataacgcttgtccgggggcagctgggcagcacccagagccagggc
ctggtgccttgcatcgtgtttgtcctgaaggagatgctgccaaattatcacaagtggcgc
tataactcccatggagtgagagaaaaaataggatatcttatcctccagctgatccatgca
attctgaatctgtgccctgaaatggatcctcgtagcagcagtgcccccagcctccagtcc
ctttgcatcttcagcctggccaatacagaagcaggccaggcggtcatcagcatcatgggc
attggggtggacaccatcgatatggtgatggccagccagtcctgcagtgatggggaatct
cagggccagctgctgatccagacggtgaaactggcattctccgtcaccaacaacgtcatc
cggttgaagccgccctccagcgtcgtgtcacccctggaacacgccctgactcagcacggg
gcccaccggaacaatctgatcgccgtcttagccaagtacatctaccataaacacgaccca
gccttgccccggctagccatccagctcctgaagcggctggcaacggtggctcccatgtcc
gtctacgcctgcctcggcagcgacgcctctgccatccgcgatgccttcctgacccgcctg
cagagcaggattgaggacatgcgcattaaagtcatgatccttgacttcctcacggtggcc
gtggaaacccagcccggcctgatcgaactgttccttaacctggaagtgaaagacgggagc
gagggctgcaaggagttcagcttaggggaatggagctgccttcacgtggtcctggagctg
attgactccaaacagcaggagcgctactggtgccccccgcttctgcaacgagccaccgtc
gcttttctccacgccctgtggcaggaccgacgagacagcgccatgctggtcctccggaac
aagccaaagttttggggaaacttaaccaacccgttgtttggaacccttcctccaccatct
gaaacatctgagctgagtgtcttggaaacctgtgccttgataatgaaaataatttgcctg
gagatttattccgtggtcaagggatctctggaccagtccttgaaagacaccctcaagaag
ttttcggccgagaagcgctttgcttactggtcaggctacgtgaagtccctggccttccac
gtgggcgagacggagggcagtggctgcgcctccgtgaccgagtaccagatgctgatctct
gcttggcgaatgctgcttgtggtttccaccagccacgctgatatcgtgaacttgactgat
gcagaggttcagcagctgttcgtggacgtgttgagtgggaccaaggctctgctgctggtt
cccacttctgggtgctgcctgcagttgggatccatgctgtgcaccctcctgctaattctg
ctgcggcagtggaagagcaagttgggctcggcggacgaaatcatcgactccttgacgcag
atcctggacggggtccttcaggctgaccagcagatgatggagaagaccaaagccaaggtc
ttctctgcactcatcaccgtcctgcagatgaaagagacaaaagcaagcgaaatccctcag
tactcgcagctggtgctgagcgtgtgtgagaccctccaggaggaattcatcgccctcttc
gaccacacccggcactgcttgacttcgggggattccctggaggacaaagacagcatggag
acggacgacatctcccgacacaagcagaaggaccagcgagacggggtatgcgtgctgggc
ctccacttggccaaggagctgtgcgaagtggacgaagagggagacagctggctgcaagtg
acgcggagcctcccgctgctccccaccctctgcaccaccttggaggtcagcctgaggctg
aagcagaacctgcacttcaccgaagcctcgctccacctgctgctcaccttggccaagact
cagcagggggcagcggccgtggccacggctggcatccttcacagcatctgcttgcccctc
ctgagcgtctaccagctgactagcaatggagggggacaggtctccgtttccactcggcgg
tctctggacggcccggcgtggcctggcgtctatcgcctctccgtgtcgctgatggagcgc
ctgctgaagacccttcgctacaactttctgaccgacgctttggacttcgtgggggtccac
caggagaggatccttcagtgcttaaacgccgtccggacggtgcagagcctggcctgcctc
gaagaagccgaccatactgtggggttcctcctccagctgtccatcttcatgaaggagtgg
catttccacctgccccagctcctgagagacgtccaggtcaatttgtgctacctgtgccag
gcctgcactttgctgctccacagccgcaaaatgctccagcactacttgcaggccaagaac
ggcgagtccattccctcggctgtcctgcctcgcctccagagaaccccgccggtttcggcc
aagctggccagccctgaatcggaggcggccgagcagaaggccctgtgcaccgtccagtac
agcctcctgaaaatccttagcaagtgccttgcggccttacgtcacttcaccccggacatc
tgtcagatcctccttgaccagtccctggacctggcagagtacaacatccttttcatgctg
agcttcacgactccggcctttgactcggaggcggccccctcttttgggacccttctggcc
accatcaacgtggccctgaacatgttaggggagttggataagaagaaagaccccttcagt
ctggctgcagggccctccccccagcaggaagggaacaagaccctcaagcccctcctgatg
tttaccatggaaaactgcttctacctgctcatctctcaggcggttcggtatttgaaggac
ccggcggtgcactcgcgcgataaacagcgcatgaaacaggagctcagctcagagctgagc
acgctgctctccagcctgtctcgctacttccgccgcgggggtccttcctcgcctggcggg
gcccttctccctcctccccagggaaagccctcctccaagctggggccggaaggccaggag
cccctcttccagctggtgcacacttttgtcagacacgtgcaaagataa
DBGET
integrated database retrieval system
