Nitrosomonas stercoris: Nstercoris_00116
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Entry
Nstercoris_00116 CDS
T06172
Name
(GenBank) hypothetical protein
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
nst
Nitrosomonas stercoris
Brite
KEGG Orthology (KO) [BR:
nst00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nst03019
]
Nstercoris_00116
Enzymes [BR:
nst01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Nstercoris_00116
Messenger RNA biogenesis [BR:
nst03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Nstercoris_00116
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
HA2_N
AAA_19
AAA_22
NACHT
SLFN-g3_helicase
nSTAND3
AAA_23
ResIII
ABC_tran
T2SSE
Rab5-bind
FtsK_SpoIIIE
SRP54
Sigma54_activat
Motif
Other DBs
NCBI-ProteinID:
BBL33890
UniProt:
A0A4Y1YIH5
LinkDB
All DBs
Position
1:complement(112625..116386)
Genome browser
AA seq
1253 aa
AA seq
DB search
MVSPSSTISRITYPEELPVVARREEIARAIAQHQTVVICGETGSGKTTQLPKICLELAQN
SSDKQYTNKLIGHTQPRRIAARTVAARIATELNTPLGELVGYKVRFSDRTHAATRIKLMT
DGILLAETQQDPLLRAYHTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKLIITSATIDA
QRFSEHFHAAPVIEVSGRLFPVEIHYRPLHEYEEETELDLSRAILHAVDEAIYQGEGDIL
VFLPGEREIREAAETLRKHAFSGPNGKAGVEILPLFARLSHKEQARIFTLGQRRRIVLAT
NVAETSLTVPGIRYVIDSGLARINRYSYRNKVEQLLVEKISRASANQRAGRCGRVMNGVC
FRLYSEEDFIARPEYTDPEILRSSLAAVILRMKSLKIGDVEQFPFIQAPAARMIADGYQL
LAELGALNEHKKLTKIGHQLARFPIDPKVARMILAAKYENCLTEVLIVASALSLQDPRER
PFEHQQAADQAHQLFRDDRSDFIGYLKLWDFYNELVKHKKSNKKLSEQCRKHFISQRRMR
EWREIHGQLHTLIREIGLRPNQVPASYEEIHRALLSGLLGNIGFKSDEKGIYEGARAIKF
SIFPGSSLRKKRPKWIMAAELAETSKLYARCVAAIDPTWLERIAGKLCKKHYFDPHWEKK
RAQAVVYERVTLYGLTIVPKRSVAYGHIDPAHAREIFIREALVAGEYTSNATFLEHNQQL
IAEIHELESRIRRQDILVDEQQLFEFYAARIPQDIYSSRAFEKWRKQAEQTQPELLYLTR
DFLIRQTAETPTTEQFPETLTINEHVLPLRYRFDPGHPLDGVTVIVPLPLLNQFMPFHFD
RLVPGLIREKITWYIKTLPKSIRRHTIPTPQFVTHFLEWLDLHPHVTTSLPEALAAFISD
ETAIKVPLDSWQDKSLPTHLRMKIEVVDDAGTSLGMGQDLAELKTQFGHTAQQLFTDSAG
TELDAIERDNITQWDFGELPQEVLFYRGQRELIGYPALVDQEYSVAIRILDTPAKAQRSM
RAGIRRLLCLVLKERIRRLEKKLPVEQRAVLFMNGLIDPGQLKEDVTQAIIDRALLGDDP
LPYNETTFTAQVARARSRLASVTQETAELVYTIAESCQALKQQLPALGTSFPTLKKDLET
QLQHLVYPGFLSATHWQYLQHLPRYLKGMLLRMDKYPKNPTRDQEQTQQVAILWQQYAKH
LHKHQQAEIEDPNLEAFRWQIEELRISLFSQELKTPTPVSIKRLQKLWENVRE
NT seq
3762 nt
NT seq
+upstream
nt +downstream
nt
ttggtctctccctcttccactatttctcgcattacctacccagaagaacttcctgtagtc
gcgcggcgtgaagaaattgcccgcgcgattgcgcagcatcaaacggtcgttatttgtgga
gaaacaggttctggcaaaaccacgcaactccccaagatttgcctggagctggcacaaaat
tcttctgacaagcagtatacaaacaaactaattggccatactcagccgcggcgcattgct
gccagaacagtagcggcgcgtatcgccacagaactcaatacgccacttggggagttagta
ggttacaaggtacgcttttctgatcgtactcatgctgctacgcgtattaaattgatgacc
gatggcattttgctggcggaaacgcagcaagatcccttattgcgtgcttaccacaccatc
attattgatgaagcacatgagcgcagtttgaatattgattttctgctgggttatcttaag
caattgttgccacgtcgccctgatttaaaattaatcatcacctctgccaccattgatgca
caacgcttttctgagcattttcatgcagcgccagtcatagaagtgtctggtcggctgttc
ccagtagaaattcattaccgacctttgcatgaatacgaagaagaaacggagctagatctc
tcacgtgcaattttgcatgcggtagatgaggctatctaccagggggaaggagatatcctg
gtgtttctaccaggagaacgagaaatacgtgaagctgctgaaactctgcgtaagcacgct
ttttcaggtccaaatggtaaagcgggcgtagagattttgcccttgtttgctcgtttatcg
cataaagaacaagcgcgtatttttacacttggtcaacgccgccgcattgtgttagccact
aatgtagcggaaacttcgctaacagtaccaggtatacgttacgtcattgatagcggattg
gcgcgcatcaatcgttacagttatcgcaataaggtagaacagctgctggttgaaaagatt
tcgcgagcttctgccaatcagcgtgccgggcgctgtggtcgtgtgatgaatggcgtgtgt
tttcgcttatattcagaagaagattttattgcacgcccggaatatactgatccggaaatc
ctgcgctcttcgttagctgctgttattttgcgtatgaaatcgctgaagatcggcgatgta
gagcaattcccatttattcaagcacctgcggcacgtatgatcgccgatggttatcagcta
ttagccgaattaggcgcgctaaatgaacacaaaaaactcaccaaaattggtcatcagctg
gccaggtttccaattgatcccaaagtagcacgcatgattctcgcagccaaatatgaaaac
tgtttgacagaagtgttaattgttgcttccgcactgagcttgcaagatccgcgtgaacgt
ccctttgaacaccaacaagcagctgatcaggcacatcagctatttcgcgatgatcgttcc
gattttattggctatctcaagttgtgggatttttataatgaattggtcaagcacaaaaaa
tccaacaaaaagctcagcgagcaatgtcgtaaacactttatttctcagcgcagaatgcgt
gagtggcgtgaaattcacggtcaattacatactttgatccgggaaattggcttgcgtccc
aatcaagtaccggccagctatgaagaaattcaccgtgcattgctttccggcttattaggt
aatatcggcttcaaatctgatgaaaaaggcatatatgagggtgcacgtgctattaagttt
tcaatttttcctggttcgtctctgcgcaaaaaacgacccaaatggattatggcagcagaa
ttggcagaaactagcaagttatatgcgcgctgtgtagcagccattgatccaacctggctg
gaaagaatcgccggcaaactgtgcaaaaaacactactttgatccacattgggaaaagaaa
cgcgcgcaagcggtggtgtacgaacgcgttactttgtatggattaaccattgtgcccaag
cgtagcgtagcgtacggccatattgatccagcgcacgcccgcgaaatttttattcgcgaa
gcattagttgctggggaatatacaagtaatgctacttttctcgagcataatcaacagctg
attgccgaaattcacgaactggaaagcagaatacgccgccaggatattttggtggatgaa
caacaactttttgaattttatgctgcacgtatcccacaagatatttacagcagccgtgcg
tttgaaaaatggcgcaaacaagctgaacaaactcagcccgaactgctttacctgacacga
gattttctgatacggcaaacagcagaaacgcccaccactgaacaatttccagaaacctta
acgattaatgagcatgtattaccactgcgctatcggtttgatcccggccatccgttagat
ggtgtcactgtgattgtgccgttaccgctactgaaccaattcatgccgtttcacttcgat
cgactggttcctggattgatacgagaaaaaattacctggtatattaaaacactacctaaa
tctattcggcggcacaccataccaacgccgcaatttgtcacacattttctggagtggttg
gatctgcatccccacgttaccacttcattgccagaagcgctggccgcgtttattagtgac
gaaacagcaatcaaagtgccactagatagttggcaagataaatcgttacccactcatctg
cgcatgaaaattgaggttgttgacgatgctggcacatcgcttggcatggggcaagatctc
gctgaactaaaaacacagtttggccacactgcccagcaactttttaccgatagtgcagga
actgagctagatgcaattgagcgcgataacatcacccaatgggattttggggaattgcct
caagaggttctcttctaccgagggcaacgagaattaattggttatccagcgttggttgat
caagagtatagtgtcgccattcgcatacttgatactccagctaaagcacagcgtagcatg
cgtgctggcattcggcgcttattatgtttggtgctaaaagaacgaattaggcgactagaa
aaaaaattacctgttgagcaacgagctgttttgttcatgaatggtttgattgatcccggc
cagctcaaagaggatgtcacccaggccattattgatcgtgctttgttaggggatgatcct
ttgccatataatgagacgaccttcacagcacaggtagcacgtgctcgttctcgtttagca
agcgtgacgcaggaaacagcagaactggtttataccattgccgaatcttgtcaagcgcta
aaacaacaattgcccgcgctaggcacatcctttccaaccttgaaaaaagatctggaaaca
caactacaacacttggtttatccaggttttctcagcgctactcattggcaatatctacaa
catttaccgcgctaccttaagggcatgttgctgcgcatggataaataccctaaaaatccg
acacgagatcaagaacaaacacaacaggtggcaatactgtggcaacaatatgcaaagcat
ctacacaaacatcaacaagctgaaattgaagatcccaacttagaggcattccgttggcag
atcgaagaactgcgtatttccttgtttagccaggaactgaaaactcctaccccggtatcg
atcaaacgcctgcaaaaactatgggaaaatgtacgggaataa
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