Nitrosomonas stercoris: Nstercoris_00689
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Entry
Nstercoris_00689 CDS
T06172
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
nst
Nitrosomonas stercoris
Pathway
nst03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nst00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Nstercoris_00689
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nst03019
]
Nstercoris_00689
Enzymes [BR:
nst01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Nstercoris_00689
Messenger RNA biogenesis [BR:
nst03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Nstercoris_00689
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BBL34453
UniProt:
A0A4Y1YNH7
LinkDB
All DBs
Position
1:complement(697181..698650)
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AA seq
489 aa
AA seq
DB search
MDCNVTFEQLGLSSEILRAVADEGYTAPTPVQERVIPLILAGRDIMASAQTGTGKTAGFT
LPLLYRLQMYASASTSPARHPIRALIIAPTRELAIQISNSVKRYGKYLAVRSAVVFGGVS
IEPQVAEMQAGIEILVATPGRLLDLIERKVANFSKTEVLILDEADRMLDMGFLPDIKKVM
ALLPSQRQSLMFSATFSDEIKKLANGLLQHPVQVEVAAQNTVNKSISHVIHRVVSKNKFA
LLQYLIKKQNLESALVFVKTKHGASQLARMLVRRKIQALAIHGDKNQLQRSHALSEFKNG
GVQILVATDVAARGIDIENLSHVINYELPSNPEDYVHRVGRTGRAGSEGNALSLVGENET
ELLANIEKLLHTKLKVEKVSGFDEDLSVKNVPDRKNKISAGTTQNYNSQHIRNARGEKNG
KYANFSYDRALKNNKDPIFTEPYVPQVNLAQSANVERVGSQSLGVYKRDKKIIPALFMAH
TRKKNEESN
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atggactgtaatgtgacatttgagcaattaggtttatctagcgaaatactgcgagcagtt
gcggatgagggttatactgctccaactcctgttcaggagagagtgatcccgcttattctt
gctggccgagatattatggcgagtgcgcagacgggtactggtaaaacagcaggttttacc
ttgcctttgctttatcgcttgcagatgtatgccagcgcaagtacatctcctgctcgtcat
cctattcgtgctttaattatagctccaacccgtgaattggcgatacagattagcaacagt
gttaaaagatatggaaagtatcttgcagtgcgatcggctgttgtttttggtggggtgagt
attgaaccacaggtggcagaaatgcaggcaggtatcgagatattggtcgccacccctggc
cgcttgttggatttgattgagcggaaagtagcaaatttttccaaaacagaggttttaatt
ctggacgaggcagatcgtatgttagatatgggtttcttgccagatattaaaaaagtaatg
gcgttattaccctcacaacgacaaagtttgatgttttcggcaactttttctgatgaaatc
aagaaacttgcgaatggtttgttacaacatccagtgcaggttgaagtggctgcacaaaat
actgtaaataaatcaatttcgcatgttattcatcgagtagtatccaaaaataaatttgcg
ttattacagtacctcattaaaaaacagaatcttgaatcggcgcttgtttttgtaaagaca
aagcatggtgcttctcaattagctcgaatgcttgttcgtcgtaaaattcaagcattggct
attcacggcgataaaaatcaattacagcgttctcatgcactttccgaattcaagaatgga
ggtgtgcagattctagtggcaacagatgtagctgctcgtggtattgatattgagaatttg
tctcatgtaattaattatgaattgccaagtaatcctgaagattatgtgcatagagtggga
cgtacagggcgtgccggtagtgagggtaatgcgttatctctagtcggtgaaaatgaaaca
gagcttctcgctaatattgagaaacttctgcataccaaattaaaagtagaaaaagtatct
ggatttgatgaggatttgtctgtcaaaaatgttccagatcgaaagaataaaatatcagcc
ggtaccactcaaaattataatagtcagcatattcggaatgcgcgtggtgagaaaaatgga
aagtatgccaatttttcatatgatagagctctaaaaaataacaaagatccgatttttacg
gaaccttatgtgccacaggtgaatttagcgcaatcagctaatgtagaacgagtgggttct
caatcattgggcgtgtataagcgtgataaaaaaattatccctgcattatttatggcgcat
acaaggaaaaagaacgaggaaagcaattaa
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