Nitrosomonas stercoris: Nstercoris_00777
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Entry
Nstercoris_00777 CDS
T06172
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
nst
Nitrosomonas stercoris
Pathway
nst02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
nst00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Nstercoris_00777
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nst03021
]
Nstercoris_00777
Transcription machinery [BR:
nst03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Nstercoris_00777
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
GTP_EFTU
COG5_N
Motif
Other DBs
NCBI-ProteinID:
BBL34538
UniProt:
A0A4Y1YL45
LinkDB
All DBs
Position
1:complement(779597..781804)
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AA seq
735 aa
AA seq
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MTKAKVSGSTKTATSKKSAEVKNKKTRTTSSVSSKKAGVAVDEDLMTKPETVVVKKKTAT
KKKTVKKTDPIAKQDKVSSELKEAESVNLSETDKVGKKGKNSSAEKQATESAKSAASSPA
GSDVESRKMRLKKLIILGKERGYLTYAEINDHLPDDMLDTDQMESVIGIINSMGISVHDE
APDAEDLLMSDTATAVADEDVAEETEAALSSVDSEFGRTTDPVRMYMREMGTVELLTRES
EIEIAKRIEAGLRHMIRAISACPTIIENILELAADVENEKLRADELVDGFLDDEADDLIG
KKAAKSDQDSDLEETEEERIASANAAMLKMKQEVLERFTVIRQTYDDMKKIIDKNKDGRR
DAAYKQLQEKISAELMMMRFSAKMVEKLCDTQRDIVSDIRGCERKIANLCVVRAKMPRSY
FIKTFPGNETNIDWIDTEVNAGHAYSQALEHFRPVIMEQQKKMLELQEQAGIPIKELKEI
NRRMMTGEAKARRAKREMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY
RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGQEPEPA
VLAEKMEMTEDKIRKILKIAKEPISMETPIGDDEDSHLGDFIEDVATMEPADAAIYAGLR
TVTKDILDSLTPREAKVLRMRFGIEMNTDHTLEEVGRQFDVTRERIRQIEAKALRKLRHP
ARSDRLRSFLDSESS
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaagcaaaggtttcggggtcaactaaaacagctacatcaaagaaatcggcagaa
gtaaaaaataaaaaaacacgcacgactagcagtgttagcagtaaaaaggctggcgttgct
gtcgacgaggatttgatgactaaaccagaaacagttgtagttaagaaaaagacggctacc
aagaaaaaaacagtcaaaaagacggatcctattgctaagcaggacaaagtttcgtcggag
ttgaaagaagctgaatctgtcaatctttcagaaacagataaagtaggtaaaaaaggcaaa
aattcctcagcagagaaacaggctaccgaatcagctaaaagtgctgcttcatcccctgcc
ggcagtgatgttgaatcccgcaaaatgcgcttgaagaagctgattatactcggcaaagaa
cgtggttatttaacctatgccgaaattaatgatcatctgccagacgatatgctggataca
gatcaaatggaaagtgtcataggcataatcaatagcatgggtatttcagtgcacgatgaa
gcgcccgatgcagaagatttgctgatgtcagacacggccaccgcggttgctgatgaagat
gttgctgaagaaacggaagctgctctttccagtgtggattcagaatttgggcgcactaca
gatccagtccgtatgtatatgcgtgaaatggggacggtagagctactgacacgtgaaagt
gaaatagaaattgccaagcggatcgaagctgggttacggcatatgattcgtgccatttct
gcttgcccgactattatagaaaatatacttgagctcgctgcagatgtagaaaacgagaaa
ttacgagcagatgagctggttgatggttttctggatgatgaagcagatgacctgataggc
aaaaaagcggctaaatcagatcaagattctgatcttgaggaaaccgaggaagaacgaatt
gcatcagccaatgcagctatgctgaaaatgaagcaggaagtattggagcgcttcactgtt
attcgacagacctacgatgatatgaagaagatcatcgataaaaacaaagatgggcgtcga
gacgcagcgtataagcaactacaggaaaaaatctctgctgagctgatgatgatgcgtttt
tctgccaagatggttgaaaaactatgtgatacgcagcgtgatattgtgagtgatattcgt
ggttgtgagcgaaaaatagcgaatctgtgtgttgtgcgagcaaaaatgccgcgtagctat
tttatcaagacttttccagggaacgaaaccaatattgattggattgatacagaagtcaat
gctggtcatgcatatagccaggcgttggagcattttcgtccagtgattatggaacagcag
aagaaaatgctggagctgcaggaacaggctggtattcccattaaagaattgaaagaaatc
aatcgccgcatgatgacgggcgaagctaaagcacgtcgcgccaagcgtgaaatgattgaa
gccaacctgcgtttggttatctcgattgctaaaaaatataccaatcgcggattgcagttt
ttggatctgatccaggaaggcaacatcggattgatgaaagctgtggataaatttgaatat
cgacgtggttataagttttcaacctatgcaacttggtggatccgccaagcaattacgcgt
tcaattgcggatcaggcacgcactatccgtattccggtgcatatgattgagacgatcaac
aaaatgaatcgcatttctcgtcaaattttgcaggaaaccggacaagagccagaaccagca
gtactggctgaaaaaatggaaatgaccgaagataaaatccggaaaattcttaaaatagca
aaagaaccgatctcaatggaaacgcccattggtgatgatgaagattctcatctgggtgat
tttattgaggatgtcgcaaccatggagccagcagatgctgccatctatgctggattgcgt
acggtgaccaaagatattctggattcattgactcctcgagaagcgaaagtattgcgtatg
cgctttggtattgaaatgaataccgaccataccttggaagaagtgggcaggcaattcgat
gtgacacgtgaacgcattcgtcaaatcgaagcaaaagcactaagaaaattaagacacccg
gcacgatctgatcggctgcgcagtttcctggatagcgaaagttcctaa
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