Neomonachus schauinslandi (Hawaiian monk seal): 110570114
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Entry
110570114 CDS
T08474
Symbol
SCAF4
Name
(RefSeq) SR-related and CTD-associated factor 4 isoform X1
KO
K13167
SR-related and CTD-associated factor 4
Organism
nsu
Neomonachus schauinslandi (Hawaiian monk seal)
Brite
KEGG Orthology (KO) [BR:
nsu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nsu03021
]
110570114 (SCAF4)
03041 Spliceosome [BR:
nsu03041
]
110570114 (SCAF4)
Transcription machinery [BR:
nsu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110570114 (SCAF4)
Spliceosome [BR:
nsu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
110570114 (SCAF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
110570114
NCBI-ProteinID:
XP_021533759
UniProt:
A0A2Y9G7M1
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Position
1:12796023..12854084
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AA seq
1138 aa
AA seq
DB search
MDAVNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKV
PGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKN
GVFKIEIIQPLLDMAAGTSNAAPVAENVTNNEGSPPPPVKVSSEPPQATTNSVPTVPQLP
SSDAFAAVAQLFQTTQGQQLQQILQTFQQPPKPQSPALDNAVMAQVQAITAQLKTAPAQP
PEQKAAFPQPEQKTTFDKKLLDRFDYDDEPEAVEEAKKEDAAAAATTAATTPAVAVAPPA
PAAASTAPAAAPAASPPQAPFGFPGDGMQQPAYTQHQNMDQFQPRMMTIQQDPVHHQVPL
PPNGQMPGFGLLPTPPFPPMAQSVIPPTPPVQQPFQASFQAQNEPLTQKAHQEMEVEQPC
IQEVKRHMSDNRKSRSRSASRSPKRRRSRSGSRSRRSRHRRSRSRSRDRRRHSPRSRSQE
RRDREKERERRQKGLPQIKPETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMI
PPRGCAYIVMVHRQDAYRALQKLSRGNYKVNQKSIKIAWALNKGIKADYKQYWDVELGVT
YIPWDKVKPEELESFCEGGMLDSDTLNPDWKGIPKKHENEVAQNGGAETSHTEPVSPIPK
PLPVPVPPIPVPAPITVPPPQVPPHQPGPPVVGALQPPTFTPPLGIPPPGFGPGVPPPPP
PPPFLRPGFNPMHLPPGFLPPGPPPPITPPVSIPPPHTPPISIPNSTIAGINEDTTKDLS
IGNPIPTVVSGARGNAESGDSVKMYGSAVPPAAPTSLPTPPVTQPVSLLGTQGVAPGPVI
GLQAPSTGLLGARPGLIPLQRPPGMPPPHLQRFPLMPPRPMPPHMMHRGPPPGPGGFGMP
PPHGMKGPFPPHGPFVRPGGMPGLGGPGPGPGGPEDRDGRQQPTQPPPPPQPQPQQQPPP
AQPPPSAQPPPQPFRNDNRQQFNSGRDQERFGRRSFGNRVENDRERYGSRNDDRENSNRE
RREWGRRSPDRDRHRDLEERNRRSSGHRDRERDSRDRESRREKEENRGKEKPEVTDRAGG
NKTVEPPISQVGNVDTVSELDKGESESAVVKSSEELPAEATSSVEPEKDSGSAAEAPR
NT seq
3417 nt
NT seq
+upstream
nt +downstream
nt
atggacgccgtcaacgccttcaaccaggagctcttttcacttatggatatgaaacctccc
atctctcgagccaagatgattcttatcactaaagctgctattaaagctattaagctttat
aagcatgtagttcaaatagtagaaaagttcatcaaaaagtgtaaaccagagtacaaggtt
ccaggattatatgtaatcgactcaattgtgcgacagtctcgtcatcagtttggaaccgat
aaagatgtttttgggccaagattctctaaaaacataaccgccacattccaatatttgtat
ctttgtccatctgaagataagagtaaaatagttcgtgtgctgaacctttggcaaaaaaat
ggagtattcaaaattgaaattattcagcctcttttggatatggctgcaggaaccagtaat
gccgccccggtagcagaaaatgttactaataatgaaggttcacctccacctccagttaaa
gtttcttctgaaccaccccaagccactacaaactctgtaccaactgtaccacagttgcct
agctctgatgcttttgctgctgtggcccaactgtttcagacaactcaaggtcaacagctt
cagcagatccttcagacttttcagcagcctccaaaaccacagtctccggcccttgacaat
gctgtgatggctcaggtccaggctatcacagctcagttaaagacagctcctgcacagcca
cctgaacaaaaagctgctttcccccagcctgagcaaaaaactacatttgacaagaagctc
cttgatagatttgattatgatgatgagccagaagctgtggaagaagcaaagaaggaagat
gccgccgccgccgccaccaccgccgccaccacccctgctgtggctgttgcgcctccagca
cccgctgccgcctccaccgcgcccgccgccgcacccgccgcttcccctccacaggcacct
tttgggtttcctggggatggcatgcagcagccagcatatacgcaacatcaaaatatggat
cagtttcaacctcgaatgatgacaatacagcaggatccagtgcaccatcaggttccactt
cctccgaatggacagatgccaggatttggccttcttcctacacctccatttcctcccatg
gctcagtctgtgattcctccaactccacctgtgcagcagcctttccaagcttcttttcag
gcacaaaatgaaccacttacccagaaggcacatcaggaaatggaagtagaacaaccttgt
attcaagaggttaaacggcacatgtctgataacagaaagtcaagatctaggtcagcatcc
aggtcaccaaaaagaaggcgatctcgatctggttctagatctcgaaggtcccgtcatcga
cgttctcgatcacggtccagagatagacgccgacattctcctagatctcggtcccaagaa
aggcgagatcgagaaaaagaaagagaacgccgacaaaaaggccttcctcaaatcaaacca
gaaactgcgagtgtttgtagtactacactctgggtgggacagctggacaaaaggactact
caacaggatgttgccagtctattagaagagtttggtccaattgaatcaattaatatgatt
cctcccagaggttgtgcctatattgttatggttcataggcaagatgcttatcgtgccttg
cagaaactgagccgaggaaactataaagtgaaccagaaatccataaagattgcctgggct
ttaaacaaaggaataaaggcagattataagcagtattgggatgtagaactgggtgttact
tatattccgtgggacaaagtcaagcctgaagaactagagagtttttgtgaaggaggaatg
ttggacagtgatacacttaatccagattggaaaggaatccccaagaagcatgaaaatgaa
gttgctcaaaacggaggggcggaaacctcacatacagaaccagtatcacccattcctaaa
cctttaccagtgcctgtccctccgattcctgtccctgcacctataacagtgccacctcca
caggtcccaccacatcagcctggtcctcctgtagttggtgctctccagccacccacgttc
acacctcccttgggcattccgcctccgggttttggtcctggtgttcctcctccgccgcct
cctccaccatttttgcgcccaggatttaatccgatgcatttaccaccaggttttcttcct
cctggacccccacctcctataactccaccagtatccattcctcctcctcacactccacca
ataagcatcccaaactctactatcgctggtataaatgaagacactacaaaagacttatct
attggaaatcccattccaacagtggtgtctggggctagaggaaacgccgagtctggtgac
agtgtgaaaatgtatggctctgccgtgccacctgctgcacccacgagtctgcccacccct
cccgtaacccagcctgtttcacttcttggtacccaaggagttgcacctggtcctgtgatt
gggctccaggcaccatccactggtcttcttggtgcccgccctggcctgatcccacttcag
cgccctccaggaatgcctccacctcacttacagcggtttcctctgatgccacctcgcccc
atgccgccgcatatgatgcacagaggcccccctccaggaccggggggctttggaatgcct
ccacctcatggaatgaaaggcccctttccaccgcatggcccctttgttaggcctggcgga
atgccagggcttgggggcccagggccaggcccagggggccccgaggacagagacggcagg
cagcaacccacccagccgccaccgccgccccagccgcagccgcagcagcagccgccgccc
gcccagccgccgccgtctgcgcagccgccgccacagccgtttagaaatgataacaggcag
cagttcaattcaggtagagaccaagagaggtttggaagaagatcttttggaaatagggtg
gaaaatgaccgggaacggtatgggagccgtaacgatgatagagagaatagtaatcgtgag
aggagagagtggggaagaaggagccctgaccgggacaggcacagagacttggaagagagg
aatagacgctctagtgggcatcgagacagagagagagattcgagagatagagagtctcgt
agagagaaggaagaaaaccgaggaaaggagaagcctgaggtcacagacagggcaggtggt
aacaaaaccgttgaacctcccattagccaagtgggaaatgtagacactgtttcagaactt
gataagggggagtctgagtctgcagttgtaaaatcttctgaagagctacctgctgaggct
acctcatccgttgaacccgaaaaggattctggctcagcagcagaggctcctcgttag
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