Neomonachus schauinslandi (Hawaiian monk seal): 110571100
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Entry
110571100 CDS
T08474
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X2
KO
K06823
collagen type XVIII alpha
Organism
nsu
Neomonachus schauinslandi (Hawaiian monk seal)
Pathway
nsu04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
nsu00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
110571100 (COL18A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nsu04147
]
110571100 (COL18A1)
00535 Proteoglycans [BR:
nsu00535
]
110571100 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
nsu00536
]
110571100 (COL18A1)
Exosome [BR:
nsu04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
110571100 (COL18A1)
Proteoglycans [BR:
nsu00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
110571100 (COL18A1)
Glycosaminoglycan binding proteins [BR:
nsu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
110571100 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
DUF959
Collagen_trimer
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
110571100
NCBI-ProteinID:
XP_021534899
EnsemblRapid:
ENSNSCG00000012029
UniProt:
A0A2Y9GAT7
LinkDB
All DBs
Position
1:complement(1181018..1267710)
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AA seq
1476 aa
AA seq
DB search
MARLPGGRLGPPLLLLLVTYCLAAAHADLLSLNWLWSTRTDGPTAELVSEPPGSPHGQPR
EDTSTHAAPQHGPTEQGRGPASSELPVERPETGLGGASPAGPDTKEENIAGVGAKILNVA
QGIRSFVQLWDDATPTTSPPGTEAPAPVTPTAPLTLPGPSSLPQENGTALWLGSGAPSSP
DTQRTEAGTPPVPTQLPPFPGGPSPPPPAAESLGTEVGLLQLLGEPPPPQVTQVDDPDIG
PAFVFGPDANSGQVARYHFPSPFFRDFSLHFHVRPATEDAGVLFAITDAAQAVVSVGVRL
SGVRDGHQHIQLLYTEPGATRTHTAASFRLPAFTGQWTRFALSVDGATVALFVDCELFQR
VPLVRSLRGLELEPGAGLFVAQAGGADPDKFQGMIAELRVRGDPHVSPLHCLEEDDEDSG
GVSGDFGSGLEETREPLREQSGPSPKPSLPEAPPVTSPPLAAGRDVEDSRTEEIEEETTV
SSLGARTLPGLDAVTIESVRSPGGGLEEGPAVQSPNARPIPGPQGPPGPPGPPGKDGAPG
RDGEPGDPGEDGRPGDPGPQGFPGTPGDAGPKGEKGDPGVGPRGPPGPQGPPGPPGPSFR
HDKLTFIDMEGSGFGGDLESLRGPRGFPGPPGPPGVPGLPGEPGRFGMNSSDVPGPAGLP
GVPGRDGPPGLPGTPGPPGPPGKDGGPGKMGQKGSPGEVGAPGPKGRQGDSGPVGAPGEN
GLAGAPGPAGPPGPPGPPGPPGPPGPGLAAGFDDMEGSGRPFWSTAQGASGSQGPPGPPG
VKGDPGITGPPGAKGEVGADGPPGFPGLPGREGSAGAQGPKGEKGTQGEKGDPGRDGVGQ
PGLPGPPGPPGPVVYMSEQDRVLGGVPGPEGRPGFAGFPGPAGPKGDLGSKGQRGLPGPK
GEKGEPGPVFSPDGSLLAPAQKGAKGEPGFRGPPGPYGRPGHKGEIGFPGRPGRPGMNGL
KGEKGEPGHSSVGFGLRGPPGPPGPPGPPGPPGTPIYDSNAFMESGRPGPPGLPGLQGPS
GPKGDKGDVGPPGPPGQFPFDLLQLGTEMKGEKGDRGDTGQKGERGEPGGGGFFGSSVPG
PPGPPGYPGIPGPKGESIRGQPGPPGPQGPPGIGHEGRQGPPGPPGPPGPPGPPSFPGPY
RQTISVPGPPGPPGPPGPPGTMGTSSGQVRIWATYQTMLDKVPEVPEGWLIFVAEREELY
VRVRNGLRKVLLEARTPLPHGTDNEVAALQPPVGNPYPRRELTHSTARPWRADDILANPP
RLLDPQPYPGAPQHGSYLHFQPARPTGRPTHTHTHQDYHPVLHLVALNSPQPGGMRGIRG
ADFQCFQQARAVGLAGTFRAFLSSRLQDLYSVVRRADRTSVPIVNLRDEVLFPSWEALFS
GSEGQLKPGARIFSFDGRDVLQHPAWPQKSVWHGSDPSGRRLTDSYCETWRTEAAAATGQ
ASSLLAGRLLAQKAASCHSAFIVLCIENSFMTSFSK
NT seq
4431 nt
NT seq
+upstream
nt +downstream
nt
atggctcggctccctggcggccgcctgggccccccgctgctgcttctcctcgtcacatat
tgcctcgcggccgcccatgctgacctgctgagcctaaactggctgtggtccactaggacc
gacgggcccacagccgaactggtctctgagcccccggggagcccacatgggcagcccaga
gaggacaccagcacacacgcggccccccagcatggccccacggagcaggggagaggccct
gccagctcggagctccccgtggagaggccggagactggcctgggcggtgcctcccccgcg
ggcccggacacgaaggaggagaacatcgccggcgtgggagccaagatcctcaatgtggct
cagggcatccggagctttgtccagctgtgggatgacgccactcccaccacgagccccccc
gggacagaggcgccagcccctgtgacccccacggcccccctcaccctccccgggccctcc
agcctcccccaggagaacgggaccgctctctggctggggagtggggccccgagctctccg
gacacccagaggaccgaggccggcaccccgccagtgcccacccagctgccgcccttcccg
ggcgggccctcgccaccaccacctgctgcagaaagcctgggcacggaggtggggctcctg
cagctgcttggagagcccccgcccccgcaggtcacgcaggtggacgaccccgacatcggg
ccagccttcgtctttggcccggatgccaatagcggccaggtggcccggtaccacttcccc
agcccgttcttccgtgacttctcgctgcacttccacgtccggcctgccaccgaggacgcg
ggggtgctgtttgccatcacggacgcggcccaggcggtggtgtccgtgggcgtgaggctg
tcgggcgtgcgtgatgggcaccagcacatccagctcctgtacaccgagcctggtgccacg
cggacccacacggccgccagcttccgtctgcctgccttcaccggccagtggacgcgcttc
gccctcagcgtggacggcgcgaccgtggcgctgtttgtggactgcgagttgttccagagg
gtgcccttggtgcgctccctgcggggcctggagctggagcccggcgccggcctcttcgtg
gcccaggccggaggagcagatcctgacaagttccaggggatgatcgcggagctgagggtg
cgcggggacccccacgtgagccccctgcactgcctggaggaggacgatgaggacagtggc
ggggtgtctggagacttcgggagcgggctggaggagacccgggagcctctcagggagcag
tcgggtccatcgcccaaacccagcctccctgaggctcccccggtcacttctccgcccttg
gctgcaggcagggatgtggaagactccagaactgaagaaattgaggaagaaaccacggtg
tcttccttgggagctcggaccctccccggcttggatgcggtcaccatagagagtgtccgg
agccctggcggcggcctagaagagggtcctgcagtgcagagtcccaatgcacggcctata
cccgggcctcagggcccccctggccccccagggcctccagggaaggatggcgcccccgga
agggacggtgagccgggggatcctggtgaagatgggagaccgggcgaccctgggccgcag
ggcttccccgggaccccgggagatgcgggccccaagggcgagaagggggaccctggggtt
gggccaagaggacccccaggaccccaagggcctccagggccaccaggaccctccttcaga
catgacaagctgaccttcattgacatggaggggtccgggttcggcggtgacctggagagc
ctccgaggccccagaggcttccccggccccccgggacccccaggcgtcccaggcctgcct
ggagagcccggccgctttgggatgaacagctcagacgtcccaggacccgcaggccttcct
ggtgtgcctgggcgggacgggccccctgggcttcctggcaccccgggtccgccaggtcct
ccaggaaaagacggaggaccagggaagatgggccagaaaggcagccccggtgaagtgggc
gccccaggacctaagggaaggcagggtgactctgggcctgttggcgctcctggggagaat
ggcttggcaggagcccccggaccagccggcccaccagggccccccgggccccccgggccc
cccgggccaccaggaccaggacttgccgcggggtttgatgacatggaaggctccgggaga
cccttctggtcgacggctcaaggagccagtgggtcgcagggaccgcccggcccgcccggg
gtcaagggggatcctggaataaccggaccaccgggtgccaagggagaagtaggggccgac
ggacctcccgggttccccggcctccctggcagagagggctcggccggagcccagggaccc
aaaggagaaaaagggacccagggagagaaaggcgacccagggagggacggagtggggcag
cctggcctccccggaccccccggacccccagggcctgtcgtctacatgtcggagcaggat
agagtgctgggaggcgtgccgggacccgagggccggccggggttcgcgggctttcctgga
ccagccgggccaaagggagatctgggctccaaaggccagaggggcctcccgggacccaag
ggtgagaagggtgagccgggcccggtcttcagccccgatggcagcttgctggcccccgcc
cagaaaggggccaagggagagcctggcttccgaggacccccgggcccctacggacggccg
gggcacaagggagagattggcttccctgggcggccgggtcgccccgggatgaacggattg
aagggggagaaaggggagccgggacacagcagcgttggctttggcttgagaggtccaccc
ggtcccccagggcctccggggcccccaggccctcctgggactcccatctatgacagcaac
gcctttatggagtctggccgccctggacccccaggattaccagggctccaggggccttct
ggacccaagggtgacaaaggagatgtgggccctccaggaccaccagggcagttcccattc
gacctcctccagctggggactgaaatgaagggggagaagggtgaccgaggggacaccggg
cagaagggtgaacggggtgagcccgggggtggcggattcttcggctcaagtgtgcccggc
ccccccggcccgccaggctaccctgggattccgggtcccaagggagagagcattcggggc
cagcctggcccacctggacctcagggaccccctggcatcggccatgaggggcgtcaggga
cctcctgggccccctggaccccctggtcccccagggcccccttcctttcctggcccttac
aggcaaaccatcagtgttcccggccccccaggcccacctgggccccctgggccccctgga
accatgggcacctcctctgggcaggtgaggatctgggccacgtaccagaccatgctggac
aaagtgccggaggtgccggagggctggctcatcttcgtggctgagagggaggagctgtat
gtccgggtccgcaacgggctccggaaggtcctgctggaggcgcggacgccgctcccacac
gggacggacaacgaggtggccgccttgcagccccccgtgggcaacccgtacccccggcgg
gagctcacccactccacggcgcggccctggcgggcagatgacatcctggccaacccccca
cgtctgctggacccccagccctaccctggagccccacagcacggctcctacctgcacttc
cagccggctcgccccactggcaggcccacccacacccacacccaccaggactaccaccct
gtgctgcacctggtggcactgaacagcccccagccgggtggcatgcgaggcatccgcggg
gcggacttccagtgcttccagcaggcccgcgctgtggggctggccggcaccttccgcgcc
ttcctgtcctcacggctgcaggacctctacagcgtcgtgcgccgggccgaccgcacaagc
gtgcccatcgttaacctcagggacgaggtgctgttccccagctgggaggccttattctca
ggctccgagggccagctgaagcccggggcccgcatcttctctttcgacggcagagatgtc
ctgcagcaccccgcctggccccagaagagcgtgtggcacggctcagaccccagtgggcgc
cggctgacagacagctactgcgaaacgtggcggacggaggctgcggcagccacgggccag
gcgtcctcgctgctggccggccggctgctggcgcagaaagccgcgagctgccacagcgcc
ttcattgtgctctgcatcgagaacagcttcatgacctccttctccaagtag
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integrated database retrieval system
