Neomonachus schauinslandi (Hawaiian monk seal): 110572918
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Entry
110572918 CDS
T08474
Symbol
SYMPK
Name
(RefSeq) LOW QUALITY PROTEIN: symplekin
KO
K06100
symplekin
Organism
nsu
Neomonachus schauinslandi (Hawaiian monk seal)
Pathway
nsu03015
mRNA surveillance pathway
nsu04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
nsu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110572918 (SYMPK)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
110572918 (SYMPK)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nsu03021
]
110572918 (SYMPK)
03019 Messenger RNA biogenesis [BR:
nsu03019
]
110572918 (SYMPK)
Transcription machinery [BR:
nsu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110572918 (SYMPK)
Messenger RNA biogenesis [BR:
nsu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
110572918 (SYMPK)
U7-dependent histone pre-mRNA processing factors
110572918 (SYMPK)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
PDS5
Cnd1
Motif
Other DBs
NCBI-GeneID:
110572918
NCBI-ProteinID:
XP_021537019
UniProt:
A0A2Y9GHP3
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All DBs
Position
16:9371109..9406971
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AA seq
1272 aa
AA seq
DB search
MAGSSGDSVTRRSVASQFFTQEEGPGIDGMTTSERVVDLLNQAALITNDSKITVLKQVQE
LIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRD
ENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAADIILLLDSDNDGIR
THAIKFVEGLIVTLSPRMADSEVPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLL
KFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAYETLHANLPPTLAKSQVSSVRKN
LKLHLLSVLKHPASLEFQAQITTLLVDLGTPQAEIARNMPSGKDARKRPRDDSDSTLKKM
KLEPNLGEDDEDKDLEPGPSGTSKASAQISGQSDTDITAEFLQPLLTPDNVANLVLISMV
YLPEAMPASFQAIYTPVESAGTEAQIKHLARLMATQMTAAGLGPGVEQTKQCKEEPKEEK
VVKPESVLIKRRLSAQGQAISVVGSLSSMSTLEEEAPQAKRRPEPIIPVTQPRLAGAGGR
KKIFRLSDVLKPLTDTQVEAMKLGAVKRILRAEKAVACSGAAQVRIKILASLVTQFDSGL
KAEVLSFILEDVRARLDLAFAWLYQEYNAYLAAGASGTLDKYEDCLIRLLSGLQEKPDQK
DGIFTKVVLEAPLITESALEVIRKYCEDESRTYLGMSTLRDLIFKRPSRQFQYLHVLLDL
SSHEKDKVRSQALLFIKRMYEKEQLREYVEKFALNYLQLLVHPNPPSVLFGADKDTEVAA
PWTEETVKQCLYLYLALLPQNHKLIHELAAVYTEAIADIKRTVLRVIEQPIRGMGMNSPE
LLLLVENCPKGAETLVTRCLHSLTDKVPPSPELVKRVRDLYHKRLPDVRFLIPVLNGLEK
KEVIQALPKLIKLNPIVVKEVFNRLLGTQHGEGNSALSPLNPGELLIALHNIDSVKCDMK
SIIKATNLCFAERNVYTSEVLAVVMQQLMEQSPLPMLLMRTVIQSLTMYPRLGGFVMNIL
SRLIMKQVWKYPKVWEGFIKCCQRTKPQSFQVILQLPPQQLGAVFDKCPELREPLLAHVR
SFTPHQQAHIPNSIMTILEASGKQEPEAKEVPAGPLEEDDLEPLALAPAPAQPPRPPQDL
IGLRLAQEKALKRQLEEEQKLKPGGVGAPSSSSSSSTRPGPPQPEETIDFREEGPECETP
AIFISMDDDSGLTEAALLDSSLEGPLPKEAAGGLTSKEERSPQTLTPAGEDTMKTPSPAA
EESGEPESKGNS
NT seq
3819 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcagcagtggggatagtgtcactcggcgaagcgtggcgtcacagttcttcaca
caagaggagggcccgggcatcgatggcatgaccacctcagagagagtggtggatctcctg
aaccaggcagcactgatcaccaatgattcaaagatcacagtactcaagcaggtccaggaa
ttgatcatcaacaaagatcctacactactagacaacttcctggacgagatcatcgctttc
caagcggacaagtcaatcgaagtgcgcaaatttgtcattggcttcatcgaggaggcatgc
aagcgagacattgagttactgctaaaactgatcgcaaacctcaacatgctcttgagggat
gagaatgtgaatgtggtgaagaaggccatcctcactatgacccagctctacaaggtggcc
ctgcagtggatggtaaagtcacgagtcatcagtgagctccaggaggcctgctgggacatg
gtgtctgccatggctgcagacatcattctgctgctggattctgacaatgacggcatccgc
acccacgccatcaagtttgtggagggcctcatcgtcaccttgtcgccccgcatggctgac
tcggaggtgccccgacgccaggagcatgacatcagcctagaccgcatccctcgtgaccac
ccctatatccagtacaatgtgctgtgggaagaaggcaaggcagccttggagcagctgctc
aagttcatggtgcaccccgccatctcctccatcaacctgaccacggcgctgggctccctt
gccaacatcgcccggcagagacccatgttcatgtcagaggtgatccaggcctatgaaacc
ctgcatgccaacctgcccccgacgctggccaaatctcaggtgagcagtgtgcgcaagaac
ctcaagctgcacctgctgagtgtcctgaagcacccagcctccttggagtttcaggcccag
atcaccacgctgctggtggacctgggcacaccccaggccgagatcgcccgcaatatgccc
agtggcaaggatgcccgcaagcggccccgagatgactcggattccacgctcaagaagatg
aagttagagcccaacctgggggaagatgatgaggacaaggacttggagccaggcccgtcg
ggaacctccaaggcctcagcccagatctcaggccagtcagacacagacatcacagccgag
ttcctgcagcccttgctgacacccgacaatgtggccaatctggtcctcatcagcatggtg
tatctgcctgaggccatgcccgcctccttccaagccatctataccccagtggagtcagca
ggcactgaagcccagatcaagcacctggctcggctcatggccacacagatgacggctgca
ggactggggccaggtgtggagcagaccaagcagtgcaaggaggagcccaaggaggagaag
gtggtgaagccagagagtgtcctgatcaagcgacgcctgtcagcccagggccaggccatc
tcagtggtgggctccctgagctccatgtctactctggaggaggaggcgccccaggccaag
aggaggccagagcccatcatccctgtcacgcagccccggctagcgggcgctggtgggcgc
aagaaaatcttccgcctgagcgatgtgctgaagcccctgacggacacccaggtggaggct
atgaagctgggcgccgtgaagcggatccttcgggcagagaaggctgtggcctgcagcggg
gcagcccaggtgcgcataaagatcctggccagcctggtgacgcagtttgactcgggcctg
aaggctgaggtcctgtccttcatcctggaggatgtgcgggcccgcctggacttggccttc
gcctggctgtaccaggagtacaacgcctacctggcggccggtgcctcaggcaccctggac
aagtacgaggactgcctcatccgcctgctctccggcctgcaggagaagccagaccagaag
gatgggatcttcactaaggttgtgctggaggcgccactgatcaccgagagtgccctggag
gtgattcgcaagtactgcgaggatgagagtcgcacttacctgggcatgtccactcttcga
gacctgatcttcaaacgcccgtcccgccagttccagtatctgcatgttctgctagacctc
agctcccacgagaaggacaaggtgcgttcccaggccctactgttcatcaagcgcatgtat
gagaaggagcagctgcgagagtatgtggagaaatttgccctcaactacctgcaactcctg
gtccaccccaacccgccatctgtgctgtttggagccgacaaggatacagaggtggcggcg
ccctggactgaggagaccgtaaagcagtgtctgtacctctacctggctctcctgcctcag
aaccacaagctcatccacgaactggcagccgtgtacacggaggccatcgccgacatcaag
cggacggtgctgagggtcatcgaacagccgatccgaggaatgggcatgaactcaccagag
ctgctcctgctggtagaaaactgtcccaagggggcagagacactggtcacacgatgtctg
cacagcctcacggacaaagtcccgccctccccagagctggtgaagcgggtccgggatctc
taccacaagcgattgccagatgtccgctttctcatccctgtgctcaatggactggagaag
aaagaagtgatccaggccctgccaaagctcatcaaactcaaccccattgtggtgaaagag
gtcttcaaccgcctgctgggcacccagcacggtgaagggaactcagccttgtccccgctg
aaccctggagagcttctgatcgcattgcacaacatcgactcggtgaagtgtgacatgaag
tccatcatcaaagccaccaacctgtgctttgcggagcggaacgtgtacacatcggaggtg
ctggccgtggtgatgcagcagttgatggagcagagccccctgcccatgctgctcatgagg
accgtcatccagtctctgaccatgtacccccgcttggggggtttcgtcatgaacatcctg
tcccgcctcatcatgaagcaggtgtggaagtatcccaaggtgtgggagggcttcatcaag
tgctgtcaacgcaccaagccccagagtttccaggtcatcctgcagttgccaccccagcag
ctgggtgccgtctttgacaagtgcccagagctccgggagcccctgctggcccacgtccga
tccttcaccccccaccagcaagcacacatccccaactccatcatgaccatcctggaggcc
agtggcaagcaggagccagaggccaaggaagtacctgccgggcccctggaagaggacgac
ctggagcccttggccctggccccggccccagcccagcccccccggccccctcaggacctc
atcggcctgcggctggcccaggagaaagccttaaagcgtcagctagaggaggaacagaag
ctgaagccaggaggagtgggagccccctcgtcgtcgtcctcttcctccacccggccaggc
cctccccagcccgaagaaaccatagatttccgggaggaggggcctgagtgtgagaccccg
gccatcttcatcagcatggatgacgactcggggctgacggaggccgcactcctggactct
agtcttgaggggcccctacctaaggaggcagcgggcgggttgacctcaaaggaggagcgc
agtccccagaccctcacccctgccggagaagacaccatgaagacccccagccccgccgcc
gaggaatccggggaacccgagagcaaggggaacagctga
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