Neomonachus schauinslandi (Hawaiian monk seal): 110573529
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Entry
110573529 CDS
T08474
Symbol
COPA
Name
(RefSeq) coatomer subunit alpha isoform X3
KO
K05236
coatomer subunit alpha
Organism
nsu
Neomonachus schauinslandi (Hawaiian monk seal)
Brite
KEGG Orthology (KO) [BR:
nsu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
nsu04131
]
110573529 (COPA)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nsu04147
]
110573529 (COPA)
Membrane trafficking [BR:
nsu04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
110573529 (COPA)
Exosome [BR:
nsu04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
110573529 (COPA)
Exosomal proteins of bladder cancer cells
110573529 (COPA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
TPR_COPA_B
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_WDR75_1st
WD40_RFWD3
WD40_MABP1-WDR62_1st
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_SCAP
Beta-prop_SPT8
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
110573529
NCBI-ProteinID:
XP_021537735
UniProt:
A0A2Y9GIC6
LinkDB
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Position
6:complement(4727608..4771169)
Genome browser
AA seq
1224 aa
AA seq
DB search
MLTKFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFH
KQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVW
NWQSRTCVCVLTGHNHYVMCAQFHPSEDLVVSASLDQTVRVWDISGLRKKNLSPGAVESD
VRGITGVDLFGTTDAVVKHVLEGHDRGVNWAAFHPTMPLIVSGADDRQVKIWRMNESKAW
EVDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLAAH
PNLNLFAAGHDGGMIVFKLERERPAYAVHGNMLHYVKDRFLRQLDFNSSKDVAVMQLRSG
SKFPVFNMSYNPAENAVLLCTRASNLENSTYDLYTIPKDADSQNPDAPEGKRSSGLTAVW
VARNRFAVLDRMHSLLIKNLKNEITKKVQVPNCDEIFYAGTGSLLLRDAESITLFDVQQK
RTLASVKISKVKYVIWSADMSHVALLAKHAIVICNRKLEALCNIHENIRVKSGAWDESGV
FIYTTSNHIKYAVTTGDYGIIRTLDLPIYVTRVKGNNVYCLDRECRPRVLTIDPTEFKFK
LALINRKYDEVLHMVRNAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRFSLALECGNIEI
ALEAAKALDDKNCWEKLGEVALLQGNHQIVEMCYQRTKNFDKLSFLYLITGNLEKLRKMM
KIAEIRKDMSGHYQNALYLGDVSERVRILKNCGQKSLAYLTAATHGLDEEAESLKETFDP
EKETIPDIDPTAKLLQPPAPVMPLDTNWPLLTVSKGFFEGSIASKGKGGALAADIDIDTV
GTEGWGEDAELQLDEDGFVEATEGLGDDALGKGQEEGGGWDVEEDLELPPELDIPPGAAG
GAEDGFFVPPTKGTSPTQIWCNNSQLPVDHILAGSFETAMRLLHDQVGVTQFGPYKQLFL
QTYARGRTTYQALPCLPSMYGYPNRNWKDAGLKNGVPAVGLKLNDLIQRLQLCYQLTTVG
KFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMEIERKKLPKETLDQ
QKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFKTAATFARRLLELGPKPEVAQQ
TRKILSACEKNPTDAYQLNYDMHNPFDICAASYRPIYRGKPVEKCPLSGACYSPEFKGQI
CKVTTVTEIGKDVIGLRISPLQFR
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgctaaccaaattcgagaccaagagtgcgcgggtcaaagggctcagttttcaccccaaa
agaccctggatcctgaccagtttacacaatggggtcatccagttatgggactatcggatg
tgtacccttattgacaagtttgatgaacatgatggtccagtacgaggcattgacttccat
aagcagcagccattgtttgtctctggaggagatgactataagattaaggtgtggaattac
aagcttcggcgctgtctcttcacgttgcttgggcacttagactacattcgcaccacattc
ttccatcacgaatatccctggattctgagtgcctcagatgaccagaccatccgggtgtgg
aactggcagtctagaacctgtgtctgcgtgttaacaggacacaaccattatgtaatgtgt
gctcagtttcacccctcagaagacctggttgtgtcagccagcctggaccagactgtgcgt
gtttgggatatttctggtctaaggaaaaaaaacttgtcccctggtgccgtggagtccgat
gtgcgaggaataactggggttgatctgtttggaacgacagatgcggtggtgaagcacgtg
ctggagggtcatgatcgtggagtaaactgggctgccttccaccccactatgccccttatt
gtatctggggcagatgaccgtcaagtgaagatctggcgcatgaatgagtcaaaggcatgg
gaggttgacacctgccgtggtcattacaacaacgtgtcttgtgctgtcttccaccctcgc
caagagctgatccttagcaattctgaggacaagagtatccgagtctgggatatgtccaag
cggactggggttcagaccttccgcagggaccacgatcgtttctgggtcctagctgcccac
cccaatctgaacctctttgcagcaggccatgatggtggcatgattgtgtttaaactggaa
cgggaacggccagcctatgctgttcatggcaatatgctccattatgtcaaggacagattc
ttacgtcagttggatttcaacagctccaaagatgtagctgtgatgcagttgcggagtggt
tccaagtttccggtgttcaatatgtcatacaatccagcagaaaatgcagtcctactgtgt
acgagagccagcaatttagagaacagtacctatgacctgtacaccatccccaaggatgca
gactcccagaatcctgacgctcctgaagggaaacgatcctcgggcctgacagccgtttgg
gttgctagaaatcggtttgctgtcctagatcggatgcattcgctcctgatcaagaatctg
aagaatgagatcaccaaaaaggtgcaagtgcccaactgtgatgagatcttttatgctggc
acaggcagcctcctgcttcgagatgcagaatccatcacgctctttgatgttcagcagaag
cggactctggcctctgtgaagatttctaaggtgaaatatgttatctggtcagcagacatg
tcccacgtagcactactggccaaacatgccattgtgatctgtaaccgcaaactggaggct
ctgtgtaacattcatgagaacattcgcgtcaagagtggggcctgggatgagagtggggta
tttatctataccacaagcaaccacatcaaatatgccgtcaccactggggactacgggatc
atccggactctggatttacccatctatgtcacgcgcgtgaagggcaacaatgtgtattgc
ctggacagggagtgtcgtccgcgggtgctcaccattgatcccactgagttcaagttcaag
ctggccctgatcaacagaaaatatgatgaggtactgcacatggtgaggaatgccaagcta
gtaggacagtccatcattgcttacctccagaagaagggctacccggaagtggcactgcat
ttcgtcaaggatgagaaaactcgatttagtctggcactcgagtgtggaaatattgagatt
gctctggaagcagccaaagcactggatgacaagaactgctgggaaaagctgggagaagtg
gccttgctacaagggaaccaccagattgtggaaatgtgttatcaacgcaccaaaaacttt
gacaaactttctttcttgtaccttatcactggcaacctagagaaacttcgcaagatgatg
aagattgctgagatccgaaaggacatgagtggccattatcagaatgccctctacctgggt
gacgtgtccgagcgggtgcggatcctgaagaactgtgggcagaagtcactggcctatctc
acggctgctactcatggcttagatgaagaagctgagagcctgaaggagacatttgaccca
gagaaggagactatcccagacattgatcctactgccaagctgctccagccacctgcacct
gtcatgccattggataccaactggcccttactgactgtgtctaaaggcttctttgaaggc
tccattgccagcaagggcaagggaggagcactggctgctgacattgacattgacactgtt
ggcaccgagggctggggagaggatgcggagctgcagctggacgaagacggctttgtggag
gctacagaaggtctgggggacgacgctcttggcaagggacaggaagaaggaggcggctgg
gatgtcgaagaggacctggagctccctcctgagctggatataccccctggggcagctggg
ggtgctgaggatgggttctttgtgccccccaccaagggaaccagcccaactcagatctgg
tgcaataactctcagcttccagttgatcacatcctggcaggctcttttgaaacagccatg
cggctccttcacgaccaagtgggggtgacccagtttggcccctataagcaactgttccta
cagacctatgcccgcggccgtaccacctatcaggccctgccctgcctgccctccatgtac
ggctatcctaatcgcaattggaaggatgcagggctgaagaacggtgtaccagcggtgggc
ctgaagcttaatgacctcattcagcggctgcagctctgctaccagctcaccactgttggc
aagtttgaggaggctgtggaaaaattccgctccatcttgctcagtgtgcctcttctcgtt
gtggacaataaacaggagattgcagaggcccagcagctcatcaccatctgccgtgagtac
attgtgggtttgtccatggagatagaaaggaagaagctgcccaaagagactctggatcag
cagaagcgcatctgcgagatggcagcctatttcacccactcaaacctgcagcctgtgcac
atgatcctggtgctgcggacggccctcaacctcttcttcaagctcaagaactttaagaca
gctgccacctttgctcggcgcctgttggaacttgggcccaagccggaggtggctcaacag
acccgcaaaattctgtctgcttgtgagaagaaccccacagatgcctaccagctcaattac
gacatgcacaacccttttgacatctgtgctgcctcctatcggcccatctaccggggaaag
cctgtagagaaatgtccgctcagtggggcctgctattcccctgagttcaagggtcaaatc
tgcaaggtcactacagtgacagagattggcaaagacgtcattggtttaaggatcagtcct
ctgcagttccgctaa
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