Neomonachus schauinslandi (Hawaiian monk seal): 110574310
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Entry
110574310 CDS
T08474
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain
KO
K06237
collagen type IV alpha
Organism
nsu
Neomonachus schauinslandi (Hawaiian monk seal)
Pathway
nsu04151
PI3K-Akt signaling pathway
nsu04382
Cornified envelope formation
nsu04510
Focal adhesion
nsu04512
ECM-receptor interaction
nsu04820
Cytoskeleton in muscle cells
nsu04926
Relaxin signaling pathway
nsu04933
AGE-RAGE signaling pathway in diabetic complications
nsu04974
Protein digestion and absorption
nsu05146
Amoebiasis
nsu05165
Human papillomavirus infection
nsu05200
Pathways in cancer
nsu05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
nsu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
110574310 (COL4A4)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
110574310 (COL4A4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
110574310 (COL4A4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
110574310 (COL4A4)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
110574310 (COL4A4)
09154 Digestive system
04974 Protein digestion and absorption
110574310 (COL4A4)
09158 Development and regeneration
04382 Cornified envelope formation
110574310 (COL4A4)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
110574310 (COL4A4)
09162 Cancer: specific types
05222 Small cell lung cancer
110574310 (COL4A4)
09172 Infectious disease: viral
05165 Human papillomavirus infection
110574310 (COL4A4)
09174 Infectious disease: parasitic
05146 Amoebiasis
110574310 (COL4A4)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
110574310 (COL4A4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nsu04147
]
110574310 (COL4A4)
00536 Glycosaminoglycan binding proteins [BR:
nsu00536
]
110574310 (COL4A4)
Exosome [BR:
nsu04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
110574310 (COL4A4)
Glycosaminoglycan binding proteins [BR:
nsu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
110574310 (COL4A4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
110574310
NCBI-ProteinID:
XP_021538630
UniProt:
A0A2Y9GKY7
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Position
3:complement(181392509..181496444)
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AA seq
1688 aa
AA seq
DB search
MHMASIRCSFRWIKPLAADPWSLILILFSVQHVYGSGKKFVGPCGGRDCSVCQCFHEKGS
RGQPGPLGPQGPIGPLGLPGPIGVPGEKGMRGDRGPPGAAGDKGDKGPTGVPGFPGLDGI
PGHPGPPGSRGKPGMHGYNGSRGDPGFPGERGVPGPGGPPGLPGESGEKGNSVFILGAIK
GIQGDRGDPGPPGLPGLRGARGPAGTMGHPGEPGLAGAPGHPGRPGLKGNPGVGVKGQMG
DPGEVGQQGSPGPTLLVQPPDSCLYKGEKGIKGMPGMTGPPGPPGPKGEPGIGAKGEKGI
PGFSGPRGDPGSYGSPGFPGLKGEPGLFGEPGSFGFLGPKGDPGDRGYPGPPGVLVTPSL
PLKGPPGDPGHPGRYGETGSVGPPGPPGPSGPPGEDCAGMMGPPGPRGLPGHPGFPGAAG
IPGRAESSPGKPGNPGPPGLPGAPGLQGPPGSDVIYCSVGHPGPRGIKGKVGPPGRRGSK
GEKGNTGLCACEPGPMGPPGPPGLPGRQGSKGDLGLPGWLGEKGHPGPPGAEGSPGPPGK
HGASGPPGSKGEKGDMVVSRVKGQKGERGLDGLPGFPGQEGQHGQDGLPGKKGDPGPPGD
HEDALPGDEGSPGPPGLPGRAGPRGQPGLGFPGPPGERGPPGAPGRPGERGLEGLKGQKG
DTISCNVTYPGRPGPPGFDGPPGPKGFPGPRGTPGLRCLDGQKGQRGKPGISEIPGPPGF
RGDMGDPGFGGGKGSSVLGPPGSPGSRGANGQKGVMGDTAYGQPGAPGKRGLSGVPGSKG
HRGDPGRPGFSGPAGRPGFPGLKGPRGREGSAGFPGIPGPPGQSCKGGAPGIAGPPGVPG
APGRPGAPGWKGQRGDMGPPGPSGMKGLPGVPGWPGAHGPLGPPGVPGPSGDDGLPGLPG
PKGSQGLLGFPGFPGQRGKPGPEGRAGHKGDPGEDGRPGFLGDRGVKGAKGERGPPGDEG
EMAIISQKGKTGEPGPPGDGGFPGEEGDKGDPGMQGRKGEPGRHGAPGFHRGEPGRTGQP
GLPGSPGPPGSPGPRGIIGFPGFPGDQGEPGSPGSPGRSGFDGMRGPKGDKGDPASQFGS
PGPKGEPGSLGCPGHPGAPGEQGLPGVQGPTGPPGSPGLPGTSGPPGCPGNQGVPGLQGP
PGERGDPGPRGMRGDPGASGLPGIKGPSGSPGLNGLHGLKGQKGAKGTSGLHDVGPPGPV
GVPGLKGEMGDPGSPGISPPGLSGGRGPPGPPGRPGSPGPAGAAGRAPKGDIPDPGPPGD
QGPPGPDGPRGVPGPPGPPGSVDLLKGEPGDCGLPGPPGPPGPPGPSGHKGFPGCDGKDG
QKGPVGFPGLQGPQGLPGLPGEKGLPGIPGRQGQPGLPGPRGEPGPPADVESCPRIPGLP
GIPGPRGPEGAMGVPGARGPPGPGCKGESGPDGRRGEDGLPGSPGPPGSKGDAGEAGCPG
VPGPPGPIGDPGPKGFGPGYLSGFLLVLHSQTDGEPACPAGMPRLWTGYSLLYLEGQEKA
HNQDLGLAGSCLPMFSTLPFAYCNIHQVCHYGQRNDRSYWLASAAPLPGTPLSEEEIRPY
ISRCAVCEAPAPVVALHSQDQSIPPCPRTWRSLWIGYSFLMHTGAGDQGGGQALMSPGSC
LEDFRAAPFLECQGRQGTCHFFANEYSFWLTTVRPDLQFSSAPSPDTLKESQAQRQRISR
CQVCMKHS
NT seq
5067 nt
NT seq
+upstream
nt +downstream
nt
atgcacatggcgtcaataaggtgctcattcaggtggatcaagcccttggccgcagatccc
tggtcacttatacttatcctcttttctgtacaacatgtatatgggagtggaaagaagttt
gtgggtccttgcggaggaagagattgctcagtgtgccagtgctttcatgaaaaagggtct
cggggtcaaccaggaccactggggccacaaggtcctattggacccctgggactgccggga
cccattggtgttccaggagagaaagggatgagaggtgacaggggtcctcctggggcagca
ggtgacaaaggtgacaagggtccaactggtgttcctggatttccaggtttggatggcata
cctgggcacccagggcctcctggatccagaggcaagcctggcatgcacggctataatggt
tcacgaggtgatccagggtttccaggagagagaggagttcctggcccaggaggcccccca
ggccttcctggggaaagtggagaaaaaggaaattcagtgttcattttaggtgccattaaa
ggtattcagggtgacagaggggacccaggacctcctggcttgccgggattgaggggggca
agaggacccgcgggcacaatgggacatccgggagagcccgggttagccggtgctccaggc
catcctgggagaccgggcttgaagggtaatcctggcgtgggagtcaaggggcaaatggga
gacccgggtgaagttggccagcagggttctcctggacccaccttattggtacagccaccc
gattcttgtctgtataaaggagaaaagggcataaaaggaatgcctggcatgactggacct
ccaggaccaccaggacccaagggagaacctggaattggggccaaaggagagaagggtatc
cctgggttctcaggacctcggggtgatcccggttcctatgggtctccaggttttccagga
ttaaagggggaaccaggactatttggagagcctggatcgtttggatttcttggcccaaag
ggggatcccggagaccgtgggtacccaggaccaccaggggttttggtaactccatctctt
ccactcaaaggccctccaggggatccggggcaccctggccgctacggagaaacggggtct
gttggaccacctggtcctcccggcccctccggtccaccaggggaggactgtgcaggcatg
atgggacctcctgggccaagagggcttcctggtcatccgggatttccaggggcagctggt
atccctgggagagctgaatccagtccaggaaagccagggaacccgggaccacccgggttg
cccggagccccagggctgcaaggacctccgggatcagatgttatatattgtagtgttgga
caccctgggccacgaggaataaaaggcaaagtgggtcctccagggagaagaggctcaaaa
ggagaaaaaggaaacacggggctctgtgcctgtgagcccggtcccatgggcccaccagga
cctccgggacttcctgggaggcagggtagtaagggagacttggggctccctgggtggctt
ggagagaaaggtcacccaggccctcctggagctgaaggatctccaggaccaccagggaaa
catggtgcctcaggaccacctggcagcaaaggagaaaagggtgacatggttgtatcaaga
gtgaaagggcagaaaggagaaagaggtcttgatgggctcccaggatttccaggacaagag
ggacaacatggtcaggatggacttcctggaaaaaagggggatccaggccccccaggggat
catgaagacgcattaccaggtgatgaagggtctcccggaccgccaggcctcccgggcaga
gcaggacctagggggcaaccaggtctgggatttcccggcccaccaggagagagagggcca
ccaggagctccaggccgccctggcgagaggggcctcgagggcttgaagggtcagaaaggc
gatacaatttcctgtaacgtcacttaccctggcaggccagggcccccaggatttgatggg
cctccaggaccaaagggatttccaggtcctcggggcactccggggttgaggtgtttggat
gggcaaaaaggtcagcgtggcaaaccaggaatatcagaaatacctggtccacctgggttt
cgtggtgacatgggcgatccaggttttggaggtggaaaggggtcctccgttctcgggccc
ccaggctcacctggttctcgtggagcaaatggtcagaaaggagtcatgggagacactgcc
tatggccaaccaggtgccccaggcaagagaggtctttcaggtgtgccagggtcaaaagga
cacagaggtgacccgggacgtccaggcttttcagggccagctggcaggccgggattccca
ggtctcaaaggccccagaggcagagagggaagtgctgggtttccaggaatcccaggtcca
cctggtcagtcctgcaaaggaggcgccccagggatagcaggaccacccggagtccccggg
gctccaggccggccaggtgccccaggttggaaaggacagcgaggggatatggggcctcct
ggtccatctgggatgaagggcctcccaggagttccaggatggccaggggcacacggtccc
ttaggacccccaggtgtcccaggcccttcaggggatgatggactgcctggtcttccaggc
ccaaagggatcccaggggctgcttggcttccccggttttccggggcaaagaggaaagcct
ggccccgaaggacgtgctggccataaaggggacccgggagaagacggtcggcctggcttc
ctcggagaccgtggggtgaaaggtgccaaaggggagagaggacccccaggagatgaagga
gagatggctatcatttcccaaaaggggaaaactggggaacccggacctccaggagatggt
ggattcccaggagaagaaggtgataaaggcgatcctgggatgcaggggaggaaaggagag
ccaggaagacacggagcacccggatttcacagaggggagcctggtagaactgggcagcca
gggcttcccggctccccaggccccccaggctcccctgggccaagagggattattggtttt
ccgggatttccaggtgaccagggtgagccaggttctccagggtcccccggacgttcagga
tttgatggaatgagaggacctaaaggagacaaaggtgaccctgcaagtcagtttggctca
cctggtccaaagggtgaaccaggtagccttggatgtccaggacatcccggagcacccggg
gagcagggcttgcccggtgttcaagggcccacaggaccaccaggaagtccaggactacct
ggtacctccggaccaccagggtgtccaggtaatcaaggggtgcctgggctgcaggggcct
ccaggagaaagaggggatcctgggccaagaggcatgaggggagatccaggggcctcaggt
cttccaggaataaaaggtccctccgggtcacccggtctgaacggcttacatggcttaaag
ggtcagaaaggagccaaaggcacttcaggtttgcacgacgtgggcccacctggtccagtg
ggtgtacccgggctgaaaggggagatgggagaccctgggagcccgggaatttctccccca
ggcctttctggaggaagaggtccccccggccccccagggagacctggatcccctggtcct
gcaggtgccgcaggaagagctcctaaaggggacattcctgacccaggtccccccggagat
cagggacctcctggccccgacggtccaagaggagtgcccgggcccccaggcccccctggg
agtgtcgaccttctgaaaggggaaccaggagactgtggtctgccggggcctcctggtccc
ccgggcccacccggcccttcaggacacaaaggcttcccaggatgtgatggaaaagatggc
cagaaaggaccagtaggattcccagggctgcaggggccacaaggacttcctgggctcccc
ggggagaagggtttacctggcattccaggcagacaagggcaacccggtcttccaggtccc
agaggtgaaccagggccacctgccgatgtggagtcctgcccccgaatccctgggcttccc
gggataccaggcccaagaggaccagaaggagccatgggggtccctggagcaagagggcct
ccaggaccagggtgcaaaggagagtctgggccggatggcaggaggggtgaggatggactc
ccagggtcccctgggcctcctggaagcaaaggggacgcgggagaagccggctgccctgga
gtaccaggccctcctgggcccattggggaccctgggcccaaagggtttgggcctggatac
ctcagtggcttcctcctggttctccacagtcagacggatggcgaacccgcctgccccgcg
ggcatgcccaggctctggacgggctacagcctcttatacctggaaggacaggagaaggcg
cacaatcaagaccttgggctggcagggtcttgcctccccatgtttagcacgctgcccttc
gcctactgcaacatccaccaagtgtgccactacggccagaggaacgaccggtcctactgg
ctggcgagcgccgcgccgctgcccgggacgccgctgtcggaggaggagatccgcccctac
atcagccgctgtgcggtgtgcgaggccccggcgcccgtggtggctctgcacagccaggac
cagtccatccccccgtgcccgcggacctggaggagcctgtggatcgggtactcgttcctg
atgcacacaggggccggggaccagggaggagggcaggccctcatgtcccctggcagctgt
ctggaagatttccgagccgcaccgttcctcgaatgccaaggcaggcagggaacttgccac
ttttttgcaaacgagtatagcttctggctgacgacagtgagacctgacttgcagttttcc
tcggcgccctcgccagacaccttaaaagagagccaggcccagcgccagaggatcagcagg
tgccaggtgtgcatgaagcacagctag
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