Neomonachus schauinslandi (Hawaiian monk seal): 110574550
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Entry
110574550 CDS
T08474
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
nsu
Neomonachus schauinslandi (Hawaiian monk seal)
Pathway
nsu03013
Nucleocytoplasmic transport
nsu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nsu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110574550 (UPF1)
03015 mRNA surveillance pathway
110574550 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsu03019
]
110574550 (UPF1)
Enzymes [BR:
nsu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
110574550 (UPF1)
5.6.2.5 RNA 5'-3' helicase
110574550 (UPF1)
Messenger RNA biogenesis [BR:
nsu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
110574550 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
110574550 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
110574550
NCBI-ProteinID:
XP_021538921
UniProt:
A0A2Y9GIC8
LinkDB
All DBs
Position
1:complement(201059069..201095788)
Genome browser
AA seq
1130 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGGGGAG
GPVGAGAGSAAGQLDAQVGGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLP
VHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGET
VLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFL
SWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDA
YQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVI
IWLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHN
FQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGL
PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVD
QLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELS
SADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMV
PVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPAL
SAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRT
EAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDA
FQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHL
LNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYD
RSSQGRPSNMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGR
GTPKGKTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQMS
QPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagttctcagacgctcaccttcctggacaccgaggaa
gccgagctgctcggcgccgacacacagggctcggagttcgagttcaccgactttaccctc
cccagccagacgcagacgcccccgggtggccccggcggccccggaggaggtggcgcgggc
ggcccggtcggcgcgggcgcgggttctgcggccggacagctggacgcgcaggttggtgga
cccgagggcattctgcagaatggggccgtggatgacagcgtggccaagaccagccagttg
ttggctgagttgaactttgaagaagatgaagaagatacttactacacgaaggatctccct
gtgcatgcctgcagttactgcggaatacacgatcctgcttgcgtggtttactgtaacacc
agcaagaagtggttctgtaacgggcgtggaaatacttctggcagccacattgtaaatcac
ctcgtgagggcaaaatgcaaagaggtgactctgcacaaggatgggcccctgggggagaca
gttctggagtgctacaactgtggctgccgaaatgtcttcctcctcggcttcatccctgcc
aaggccgactcggtggtggtgctgctgtgcaggcagccctgcgccagtcagagcagcctc
aaggacatcaactgggacagctcccagtggcagcccctgatccaggaccgttgcttcctc
tcttggctggtcaagatcccttctgagcaggagcagctgcgggcccggcagatcaccgcc
cagcagatcaacaagctggaggagctctggaaggaaaacccttctgccaccttggaggac
ctggagaagccaggtgtggacgaggagccgcagcacgtcctcctgcggtacgaggacgcc
taccagtaccagaacatattcggccctctggtcaagctggaggccgactacgataagaaa
ctgaaagagtcccagactcaagataacatcacggtcaggtgggacctgggccttaacaag
aagagaatcgcctacttcactttgcccaagactgactctggtaatgaggatttagtcata
atttggttaagagacatgcggctcatgcagggggatgagatatgcctgaggtacaaaggg
gatctggcacccctgtggaaagggatcggccacgtcatcaaggtccctgataattatggc
gatgagatcgccattgagcttcggagcagtgtgggtgcgcccgtggaggtgactcacaac
ttccaggtggatttcgtgtggaagtcaacctcgtttgataggatgcagagtgcgctgaaa
acgtttgctgtggatgagacctctgtctcgggctacatctaccacaagctgctcgggcac
gaggtggaggatgtgatcatcaagtgccagctgccgaagcgcttcacggcacaggggctc
cccgacctcaaccattcgcaggtttacgctgtcaagactgtgctgcagagaccgctgagc
ctgatccagggaccaccaggcacggggaagacggtgacctctgccaccatcgtctaccac
cttgctcggcagggcaatgggcctgtgctcgtctgtgctccgagtaacatagctgtggat
cagctgactgagaagatccaccagactgggctgaaagtcgtgcggctctgcgcgaagagc
cgcgaggccattgactccccagtgtccttcctggccctgcacaaccagatcaggaatatg
gatagcatgccggagctgcagaagctacagcagctgaaggacgagacgggggagctgtcc
tctgctgatgagaagcggtaccgggccctgaagcgcaccgctgagagggagctgctcatg
aatgcagatgtcatctgctgcacgtgtgtgggtgcaggggacccgaggctcgccaagatg
cagttccgttccattttaattgatgagagcacccaggccaccgaaccagagtgcatggtc
cctgtggtccttggcgccaagcagctcatcctcgtgggtgaccactgtcagctgggcccc
gtggtgatgtgcaagaaggcagccaaggccggactctctcagtcactcttcgagcgcctg
gtggtgctgggcatccgtcccatccgcctgcaggtccagtatcggatgcaccctgcgctc
agcgccttcccatccaacatcttctacgagggctctctccagaatggcgtcactgcagcg
gaccgagtgaagaaggggtttgacttccagtggccccagcctgataagccgatgttcttc
tacgtgacccagggccaagaggagatcgccagctcaggcacctcctacctgaacaggacg
gaagctgccaacgtggagaagatcaccacgaagttgttgaaggcgggtgccaagcctgac
cagatcggcatcatcaccccgtacgagggccagcgctcctacctggtgcagtacatgcag
ttcagcggctccctgcacaccaagctctaccaggaggtggagattgccagtgtggacgca
ttccaggggcgagagaaggacttcatcatcctttcctgtgtgcgagccaacgagcaccaa
ggcatcggatttttaaacgaccccaggcgacttaatgtggccctgaccagagcgaggtat
ggggtcattattgtgggcaacccaaaggccctgtccaagcagccgctctggaaccacctg
ctgaactactacaaggagcagaaggtgctggtggaggggcccctgaacaacctgcgggag
agcctcatgcagttcagcaagcccaggaagctggtcaacaccatcaacccgggagcccgc
ttcatgacaacagccatgtatgatgctcgggaggccattatcccaggatccgtctatgat
cggagtagccagggccggccctcaaacatgtacttccagacccacgaccagatcggcatg
atcagtgcaggccccagccatgtggccgccatgaacattcccatccccttcaacctcgtc
atgccccccatgcccccaccagggtattttggacaagcgaacgggccagcagcaggccgg
ggtaccccaaaaggcaagactggtcgtggggggcgccagaagaaccgctttgggctccct
ggacccagccagacgaatctccccaacagccaggccagccaggacgtggcgtcccagcca
ttctcccagggcgccctgacccagggctacatctccatgagccagccctcccagatgagc
cagcctggcctctcccagcccgagctgtcccaggacagttaccttggcgatgagtttaag
tcacagattgatgtggcgctgtcgcaagactccacgtaccaaggggagcgggcataccag
cacggcggagtgacagggctgtcccagtactag
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