Neomonachus schauinslandi (Hawaiian monk seal): 110574928
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Entry
110574928 CDS
T08474
Symbol
PABPC4
Name
(RefSeq) LOW QUALITY PROTEIN: polyadenylate-binding protein 4
KO
K13126
polyadenylate-binding protein
Organism
nsu
Neomonachus schauinslandi (Hawaiian monk seal)
Pathway
nsu03015
mRNA surveillance pathway
nsu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nsu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110574928 (PABPC4)
09123 Folding, sorting and degradation
03018 RNA degradation
110574928 (PABPC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsu03019
]
110574928 (PABPC4)
03041 Spliceosome [BR:
nsu03041
]
110574928 (PABPC4)
Messenger RNA biogenesis [BR:
nsu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
110574928 (PABPC4)
mRNA cycle factors
Stress granule specific factors
110574928 (PABPC4)
Spliceosome [BR:
nsu03041
]
Complex C
Other components
Complex C specific factors
110574928 (PABPC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_7
RRM_occluded
RRM_10
RBD_RDR6
RRM_3
POP1_C
ApbA_C
Motif
Other DBs
NCBI-GeneID:
110574928
NCBI-ProteinID:
XP_044769918
UniProt:
A0A8M1MBK3
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All DBs
Position
4:complement(29845629..29859962)
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AA seq
644 aa
AA seq
DB search
MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEK
HEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRP
PYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSAIRQSGPRPALRHLAPTGSECPDRLAMDF
GGAGAAQQGLTDSCQSGGVPPAVQTLAPRAAVAATAPRAVAPYKYASSVRSPHPAIQPLQ
APQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNS
ELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAVAAATS
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgaacgctgcggccagcagctaccccatggcctccctctacgtgggtgacctgcactcg
gacgtcaccgaggccatgctgtatgaaaagttcagtcctgcggggcctgtgctgtccatc
cgggtctgccgcgatatgatcacccgccgctccctgggttatgcctacgtcaacttccag
cagccggcggacgctgagcgggccttggataccatgaactttgatgtgattaagggaaag
ccaatccgtatcatgtggtctcagagggatccctctttgagaaaatctggtgtgggaaac
gtcttcatcaagaatctggacaaatctatagataacaaggcactttatgatactttttct
gcttttggaaacattctgtcttgcaaggtggtgtgtgatgagaacggctctaagggttat
gcctttgtccacttcgagacgcaagaggctgctgacaaggccatcgagaagatgaacggc
atgctcctcaatgaccgcaaagtgtttgtgggcagattcaagtctcgaaaagagcgggaa
gctgagcttggagccaaagccaaggagttcaccaatgtttatatcaaaaactttggggaa
gaggtggatgatgagagtctgaaagagctatttagccagtttggtaagaccctaagtgtc
aaggtgatgagagatcccagtgggaaatccaaaggctttggctttgtgagttacgaaaaa
cacgaggatgccaataaggctgtggaagagatgaatggaaaagaaatcagtgggaaagtg
atttttgtaggccgtgcccagaagaaagtggaacggcaggctgagttaaagcggaaattt
gaacagctaaaacaagagagaattagtcggtatcagggggtgaatctctacattaagaac
ttggatgacaccattgatgatgagaagttaaggaaagagttttctccttttggatcaatc
accagtgctaaggtaatgttggaggatgggagaagcaaagggtttggctttgtctgcttc
tcatctcctgaagaggcgaccaaagcagtcaccgagatgaacggacgcatcgtgggctcc
aagccactatatgtcgccctggcccagaggaaggaagagcgaaaggctcacctgaccaac
cagtacatgcagcgggtggctggaatgcgagcactccctgccaatgccatcttaaatcag
ttccagcctgcagccggtggttacttcgtgccagcagtcccacaggcccagggaagacct
ccatattacacacccaaccagttagcacagatgaggcctaacccccgctggcagcaaggt
gggagacctcaaggcttccaaggaatgccaagtgctatacgccagtctgggcctcgtccc
gctcttcgccatctggctccaactgggtctgagtgcccggaccgcttggctatggacttt
ggtggggctggtgccgcccagcaagggctgactgacagctgccagtctggaggtgttccc
ccagccgtgcagaccttagcacctcgtgctgctgttgctgctactgcccctcgggctgtc
gcaccttacaaatacgcctccagtgtccgcagccctcaccctgccatccagcccctgcag
gcaccgcagcctgcggtccatgtgcaggggcaggagcccctgaccgcctccatgctggcc
gcagcgcccccccaggagcagaagcagatgctgggagaacgtttgttcccgctcatccaa
accatgcattcaaacctggctgggaaaatcacgggcatgctgttggagattgacaactct
gagctgctgcacatgctcgagtcccccgagtcgctccgctccaaggtggatgaagctgtg
gcggttctgcaggctcatcatgccaagaaagaagctgcccagaaggtgggcgctgttgcc
gctgctacctcttag
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