Neomonachus schauinslandi (Hawaiian monk seal): 110577578
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Entry
110577578 CDS
T08474
Symbol
SMARCC1
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
nsu
Neomonachus schauinslandi (Hawaiian monk seal)
Pathway
nsu03082
ATP-dependent chromatin remodeling
nsu04714
Thermogenesis
nsu05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
nsu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
110577578 (SMARCC1)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
110577578 (SMARCC1)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
110577578 (SMARCC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nsu03021
]
110577578 (SMARCC1)
03036 Chromosome and associated proteins [BR:
nsu03036
]
110577578 (SMARCC1)
Transcription machinery [BR:
nsu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
110577578 (SMARCC1)
Chromosome and associated proteins [BR:
nsu03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
110577578 (SMARCC1)
PBAF complex
110577578 (SMARCC1)
GBAF(ncBAF) complex
110577578 (SMARCC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
Chromo
BRCT_2
DUF919
SpeFL
Motif
Other DBs
NCBI-GeneID:
110577578
NCBI-ProteinID:
XP_021542624
UniProt:
A0A2Y9GZJ2
LinkDB
All DBs
Position
1:198016925..198190853
Genome browser
AA seq
1130 aa
AA seq
DB search
MAAAAGGGGLGAAAGAAGAGGAATAAGLAVYRRKDGGPASKFWESPETVSQLDSVRVWLG
KHYKKYVHADAPTNKTLAGLVVQLLQFQEDAFGKHVTNPAFTKLPAKCFMDFKAGGTLCH
ILGAAYKYKNEQGWRRFDLQNPSRMDRNVEMFMNIEKTLVQSNCLTRPNIYLIPDIDLKL
ANKLKDIIKRHQGTFTDEKSKASHHIYPYPSSQEDEEWLRPVMRKDKQVLVHWGFYPDSY
DTWVHSNDVDAEIEDPPIPEKPWKVHAKWILDTDVFNEWMNEEDYEVDENRKPVSFRQRI
STKNEEPVRSPERRDRKASANARKRKHSPSPPPPTPTESRKKSGKKGQASLYGKRRSQKE
EDEQEDLTKDMEDPTPVPNIEEVVLPKNVNPKKDSENTPVKGGTVADLDEQDEETVTTGG
KEDEDPSKGDQSRSLDPGEDNVTEQTNHIIIPSYASWFDYNCIHVIERRALPEFFNGKNK
SKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAVMRVHAFLEQWGLVNYQVD
PESRPMAMGPPPTPHFNVLADTPSGLVPLHLRSPQVPAAQQMLNFPEKNKEKPIDLQNFG
LRTDIYSKKTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILH
FLRLPIEDPYLENSDASLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALE
EFSRVREEVPLELVEAHVKKVQEAARASGKVDPTYGLESSCIAGTGPDEPEKLEGAEEEK
METDTDGQQPEKVKSVCLNSPTTGKTQRENAFQSITAENKGENETDEGDKAQDGENEKNS
EKEQDSEVSEDTKSEEKETEENKELTDTCKERESDLGKKKVEHEISEGNVATAAAAALAS
AATKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLL
TERQNFHMEQLKYAELRARQQMEQQQHGQNPQQAHQHSGGPGLAPLGAAGHPGMMPHQQP
PPYPLMHHQMPPPHPPQPGQIPGPGSMIPGQPMPGRMIPTVAANIHPPGSGPAPPGMPPM
PGNILGPRVPLTAPNGMYAPPPPPPPPPPPPPADGVPPPPAPGPPASAAP
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atggccgcggcggcgggcggcggcgggctaggggcggcggcgggcgccgcgggcgcggga
ggcgcggcgacggccgcgggcctggccgtttatcggcggaaggacggtggcccggccagc
aagttttgggagagcccggagacggtgtcccagctggattcggtgcgggtctggctgggc
aagcactacaagaagtatgttcatgcggatgctcctaccaacaaaacgctggctgggctg
gtggtacagcttcttcagttccaggaagatgcctttgggaagcatgtcaccaacccggcc
ttcaccaaactcccggcaaaatgtttcatggatttcaaagctggaggcaccttgtgtcac
attcttggggctgcttacaagtataaaaatgaacagggatggcgtagatttgatctacag
aatccatcccgaatggatcggaatgttgaaatgtttatgaacattgaaaaaacattggtg
cagagcaactgtctgaccagacccaacatctacctcattccagacattgatctgaagttg
gctaacaaattaaaagatattatcaaacgacatcaggggactttcactgatgagaagtca
aaagcttcccaccacatttatccatatccttcctcacaagaggatgaagagtggttgaga
ccggtgatgagaaaagataagcaggtgttagtgcattgggggttttacccagacagctat
gatacttgggtccatagtaacgatgttgatgcggaaattgaagatccaccaattccagaa
aagccatggaaggttcatgcgaaatggattttggacactgatgttttcaatgaatggatg
aatgaggaggattatgaggtggacgagaacaggaagcccgtgagctttcgtcagcgaatt
tcaacaaagaatgaagagccagtcagaagtccagagagaagagataggaaagcatcagct
aatgctcgaaagaggaaacattcgccttcccctccgcctcctacacccacagaatcccgg
aagaagagtggaaagaaaggccaagctagtctttatgggaagcgccgaagtcagaaagag
gaagatgagcaagaagatcttaccaaggacatggaagacccaacaccggtacccaacata
gaggaagtggtgcttccaaaaaatgtgaacccaaagaaagacagtgaaaacacacctgtt
aaaggaggaactgttgcagatctagatgagcaggatgaagaaacagtcacaacaggagga
aaggaagatgaagatcctagcaaaggtgatcagagtcgctcacttgaccctggagaagat
aatgtgacagagcagaccaatcacattattattcctagttatgcatcatggtttgattat
aactgtattcacgtgattgaacggcgtgctcttcctgagtttttcaatggaaagaacaaa
tccaagactccagaaatatacttggcatatcgaaattttatgattgacacatatcgccta
aacccccaagaatatttaaccagcactgcttgtcggaggaacttgactggagacgtgtgt
gctgtgatgagggttcatgcctttttagagcaatgggggcttgttaattaccaagtggat
ccagaaagtcgacccatggcaatgggacctcctcctactcctcattttaatgtattagct
gataccccctctgggcttgtgcctctacatcttcgatcacctcaggtccctgctgctcag
cagatgttaaattttcctgagaagaacaaggaaaaaccaattgatctgcagaactttggt
cttcgtactgacatttactccaagaaaaccttagcaaagagtaaaggtgctagtgctgga
agagaatggactgaacaggagacccttttgctcctggaggctctggagatgtataaggat
gattggaacaaagtgtcagagcatgttggaagtcgtactcaggatgaatgcatcctccac
tttctgaggcttcctattgaggacccataccttgagaattcggatgcttccctggggccc
ctggcctaccagcctgtccctttcagtcagtcaggaaacccagtcatgagcactgttgct
tttttggcatcagtggtggaccctcgcgtggcatctgctgcagcaaaagcagctttggag
gagttttctagggtccgagaggaagtgccactggaactggtcgaagctcatgtcaagaaa
gtgcaagaagcagcacgggcttctgggaaagtggatcccacctatggcctggagagcagc
tgcattgcaggcacaggacctgatgagccagagaaacttgaaggggctgaagaggaaaaa
atggaaacagatactgatggtcaacagcctgaaaaggtgaagtctgtctgtttgaattct
cctaccacaggaaagacacagagagagaatgcctttcagagcataacggcagaaaacaaa
ggggaaaatgaaacagacgaaggggataaagcacaagatggagaaaatgaaaaaaatagt
gagaaggagcaggacagtgaagttagtgaggataccaaatcagaagaaaaggaaactgaa
gagaacaaggaactcactgatacttgtaaagaaagagaaagcgatctcgggaagaagaaa
gtagaacacgaaatttccgaaggaaatgtggccacggctgccgcagctgctctcgcttca
gctgcaaccaaagccaagcatctggctgccgtggaggagagaaagatcaagtctctggtg
gccctgttggttgagacacaaatgaagaaattggagatcaaacttcgacattttgaggag
ctggaaactatcatggacagagaaaaggaggctttagaacaacagaggcagcagttgctc
actgaacgccagaacttccacatggaacagctgaaatatgccgaattgcgagcccggcag
cagatggaacagcagcagcacgggcagaaccctcagcaggcacaccagcactcaggagga
cctggcctggcgccgcttggagcagcagggcaccccggcatgatgccccatcagcagccc
cctccctaccctctgatgcaccaccagatgccaccacctcatccaccgcagccaggtcag
ataccaggtccaggttccatgatccctgggcagcccatgccaggccgcatgattcccacc
gttgcagccaacatccacccccccgggagtggcccagcccctcctggtatgcctccaatg
ccaggaaacatcttaggaccccgggtacccctcacggcacctaatggcatgtatgcccct
ccaccgccgccgccgccgccgccgccgccgccgcccgctgatggagtccctccgcctccc
gctccaggcccgcccgcctcggccgccccttag
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