Neomonachus schauinslandi (Hawaiian monk seal): 110579628
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Entry
110579628 CDS
T08474
Symbol
PABPC1L
Name
(RefSeq) polyadenylate-binding protein 1-like
KO
K13126
polyadenylate-binding protein
Organism
nsu
Neomonachus schauinslandi (Hawaiian monk seal)
Pathway
nsu03015
mRNA surveillance pathway
nsu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nsu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110579628 (PABPC1L)
09123 Folding, sorting and degradation
03018 RNA degradation
110579628 (PABPC1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsu03019
]
110579628 (PABPC1L)
03041 Spliceosome [BR:
nsu03041
]
110579628 (PABPC1L)
Messenger RNA biogenesis [BR:
nsu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
110579628 (PABPC1L)
mRNA cycle factors
Stress granule specific factors
110579628 (PABPC1L)
Spliceosome [BR:
nsu03041
]
Complex C
Other components
Complex C specific factors
110579628 (PABPC1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RBD_DEAH11
RRM_7
RRM_5
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
110579628
NCBI-ProteinID:
XP_021544969
UniProt:
A0A2Y9H6Q1
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Position
10:122945422..122964085
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AA seq
616 aa
AA seq
DB search
MNASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYVNFQ
QPADAERALDTMNFEVIKGQAVRIMWSQRDPGLRRSGVGNIFIKNLEDSIDNKALYDTFS
TFGNILSCKVVCDDHGSRGFGFVHFETHEAAQQAIATMNGMLLNDRKVFVGHFKSRRERE
AELGARAMEFTNIYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEK
HEEAQKAVVDMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKN
LDDCIDDEKLRREFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT
KPLYVALAQRKEERKAILTNQYMQRLSTVRALGGPLLGSFQQPAGYFLPAVPQPPAQAAY
YASGPPMQPTPRWTAQPPRLSSTYPPAASVVRPPAMLRRPPAQVSSVRQASTQVPPPLPH
TQRVANIGTQTTGASGVGYSTPSGPLLTHKYPSAPHNPGMQEPAVRIPGQEPLTASMLAA
APLPEQKQMIGERLYPLIYDTHTQLAGKITGMLLEIDNSELLLMLESPESLNAKVEEALA
VLQAHQATELTTGNVL
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgaacgccagcggcccgggctacccgctcgcctcgctctacgtgggcgacctgcacccc
gacgtgaccgaggccatgctgtacgagaagttctcgcccgccggccccatcctgtccatc
cgcgtgtgccgcgacgtggccacccgccgctcgctgggctacgcctacgtcaacttccag
cagcccgccgacgcggagcgggcactggacacaatgaactttgaagtgatcaaaggccag
gccgtccgcatcatgtggtcccagcgagacccaggactccgcaggtcgggtgtgggcaac
atcttcatcaagaacctggaggactccattgacaacaaggccttatatgacaccttctcc
acctttgggaacatcctctcttgcaaggtggtgtgtgatgatcacggttcccgaggcttc
ggctttgtccactttgagacccatgaggctgcacagcaggccattgccaccatgaacggg
atgctgctgaatgaccgtaaagtcttcgtcggccacttcaagtcccgacgagagcgggaa
gcagagctgggagctcgggccatggagtttactaacatttatgtgaagaacctccatgtg
gacgtggacgagcagggcctgcaggacctcttctcccagtttgggaagatgctgagtgtg
aaggtgatgagggacgacagtggccactcccgaggcttcggctttgtcaactttgagaag
catgaggaagcccagaaggctgtggtggacatgaatgggaaggaggtgagcgggcggctg
ctgtacgtgggccgggcccagaagcgtgtggaacggcagaatgagctgaagcgcaggttc
gagcagatgaagcaggaccggctgacccgttaccagggtgtgaacctgtacgttaagaac
ctagatgactgcattgatgatgagaagctgagaagagagttctctccctatggagtgatt
actagtgctaaggtgatgacagagggtggccacagcaaggggtttggctttgtgtgtttt
tcctctccagaagaggcgaccaaggccgtgaccgagatgaacgggcgcatcgtgggcacc
aagccactgtacgtggcactggcccagcgcaaagaggagcggaaggccatcctgaccaac
cagtacatgcagcgtctgtccacggtgcgggcgctgggcggccccctcttgggctccttc
cagcagcccgccggctacttcctgcccgccgtgccccagcctccagcccaggccgcgtac
tatgcctccggcccccccatgcagcccacccccaggtggacggcccagcctccgagactg
tcctccacctatcctccagctgcctcagtggtccggccaccagccatgttgcggcgcccc
ccggcccaggtcagcagtgtcaggcaggcctctacccaggtgccacccccgctgccccac
acccaaagagtggccaacatcggcacccagaccacaggagccagtggggtgggatattct
acaccaagcgggcctctcctgacgcacaaatatccctcagcaccacacaaccctgggatg
caggagcccgctgtgcgcatcccgggacaggagcccctgacggcgtccatgctggccgcg
gcaccgctgcccgagcaaaagcagatgatcggtgagcgtctgtaccccctaatctacgat
acccacacccagctggcgggcaagatcacgggcatgctgctggagatcgacaactcggag
ctgctgctcatgctggagtccccagagtccctcaatgccaaggtggaagaggctttggcg
gtgctgcaggcacaccaggccacagagctgacgacggggaacgtgctctga
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