Neomonachus schauinslandi (Hawaiian monk seal): 110579724
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Entry
110579724 CDS
T08474
Symbol
VPS13A
Name
(RefSeq) vacuolar protein sorting-associated protein 13A isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
nsu
Neomonachus schauinslandi (Hawaiian monk seal)
Brite
KEGG Orthology (KO) [BR:
nsu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
nsu04131
]
110579724 (VPS13A)
Membrane trafficking [BR:
nsu04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
110579724 (VPS13A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
ATG2_CAD
RRM_fung
Mer2
Motif
Other DBs
NCBI-GeneID:
110579724
NCBI-ProteinID:
XP_021545057
UniProt:
A0A2Y9H0L3
LinkDB
All DBs
Position
13:18777399..19047318
Genome browser
AA seq
3171 aa
AA seq
DB search
MVFESVVVDVLNRFLGDYVVNLDTSQLTLGIWGGAVALKNLEIKENALSQLDVPFKVKVG
HIGNLNLIIPWKNLYTQPVEAVLGDIYLLIVPSSKIKYDPLKEEKQLLEAKQHELKRIEE
AKQKVADQEKLRVEKQDTFTEKLITQIIKNLQVKISNIHIRYEDDITNRDNPLSFGISLQ
NLSMQTTDQNWVPCLHDETEKLFCKLIRLDNLFAYWNVKSQLFYLNDYDESLDSLKKGIV
NGNIVPKGYDFVFRPISANAKLQMNRRSDFDFSAPKINLDVELHDIAIELNKPQYFSVME
LLESVDMMTQNLPYRKFKPDVPLHYHARDWWAYAIHGILEVNVCPRLRMWSWKHIREHRQ
KMKQYKELYKKKITTKKPTGEILMSLEELEKTLDVFNITISRQQAEVEVKKAGYRIFREG
AKDSEENKGWFSWLWTWSEPRSKEQPDVKPGILEEMLTSEEKTLLYEAIGYSETAVDPTL
PKTFEAMKFFVHLKSMSIVLREKRETPELLDIVVEEFSTLIVQRPGAQAIKFETKIDSFH
VTGLPDNSTKPRLLSSLDDATSLFQIIFEINPLDETVAQRCIIEAEPLEMIYDARTVNSI
VEFFRPPKEVNLAQLTSATLTKLEEFRDKTATGLLYIIETQKVLDLKINLKASYVIIPQG
GIFSPTSNLLLLDLGHLKVTSKSRSELPDMKPAGARLEEIMHRAYDSFDVQLTSIQLLYS
TVGDDWREARKLSVSTQHILVPMHFNVELSKAMVFMDIRMPKFKIFGKLPLISLRISDKK
LQGILELIESIPKPTPATETYAPAKPFQIQRSTSLGTSQISQKMLPFLELPCVDDDSEEE
FFDAPCSPLDEPLQSPTEIQSYQKKFQKPDCSKNMIQYKIRFEVPEVLIQFYHLVGDSEL
PVVEVDVLGLGTDVELRTFDLKANAFLKEFCLKCPEHTDANKKPIYLITTLDNTMEDLLT
LEYVKAEKNLPNLKSTYNNAVQLIKVNFSSLDIHLHTEALLNTINYFSNIIPQLEEKPAT
VSVAETEDKGEVVKKMPLKLSKNEDVITLQILAELSCLQIFIQDQKRNIAEIKIEGLDSE
IIMRPAATEINAKLRNIIVLDSDKTAVYKKAVYITGKEVFSFKVISFVDATAGSAYTDMN
VVDIQINLTVGCIEVVFVTKFLYSILAFIDNFQAAKQALAEATVQAAGMAATGVKELAQR
SSRMALDVNIKAPVVVIPQSPVSENVFVADFGLITMTNTFHIITESQSNPPPVIDLITIR
LSEMRLYRTQFIDDAYQEVLDLLLPLNLEVIVERNLSWEWYQEVPCFNVNAQLKPMEFIL
SQEDITTIFKTLYSNIWYEEGGGASSAGVKDQSSVNSGATNASHHLEGTTVVTAAVVEIH
SQASQVKTTLNMSFRTDYLTMVLYSPGPEQTSFTDVRDPSLKLAEFKLENIISTAKMYTD
DSTFSSFSLKNCILDDKRSHVKKATPRMIGLTVGFDKKDMMDVKYRRVRDGWVTDLVLQE
TYICASVEFLLTVANVFLEAYTTGTAVETSVQTWTAKEEVSVQESEKWEVNIIIKNPEIV
FVADMTKSDAPALVITTQCEICWKGDLENNTMTAAIKDLQVRACPFLPGKRKGKITTVLQ
PCDLFYQATQIGTDPQVIDISIKSLTLKVSPVIINTVITITSALYTSKDTIPQETTSSTV
HLWEKKDTKNLKMWFLEEPNEVENKAPTTELILKGEMMRVNIDSIFIVLEAGIGPRTVPM
LLAKSRFSGEGKNWSSLINLYCQLELEVHYYNEMFGVWEPLLEPLEIDQTEDFRPWNLGI
KMKKKAKKAIVESDTEEENYKVPEYKTVISFHSKDQLNITLSKCGLVMLNNLVKAFTEAA
TGASTVFIRDLAPFMILNSLGLTVSVSPSDSFSVLNVPLAKSYVLKNEESLSMDYVGTKD
NDHFNAMTSLSSKLFFILLTPANHSTADKIPLTKVGRRLYTVRHRASGVERSIVCQVDGV
EGSKKITIRSPVQIKNHFSIPLCVYEGNTLLGTASPGSEFNIPLTSYRSPLSLKPEDEDY
QACERIDFEEIIKNDGTFLKKKCKSKNTAKKPFNIHVVPEKDNLSSLSVYSEDGWDLPYI
MHLWPPILLRNLLPYKIAYYIEGIEHKVYTLNEGHSAHICTVHLEKARLHLKLLDYLNHD
WKSEYHIKPNQQDISFINFTCVTEIEKTDLDIAIHVTYNIGQTVVAFHSPYWMVNKTSRM
LQYKADGIHRKHPPNYKKPVLFSFQPKHFFNNNKVQLMITDSELSDQFSIDTVGSHGAVK
CKGLKMDYQVGVTIDLSSFNITRIVTFTPFYMIENKSKYHISVAEQGNDKWLSLDLEQCI
PFWPEDASNALLIQVERNQGPPKKIHFNKQANCILLRLDNELGGIIAEVNLAEHSTVITF
SDYHDGAAPFLLINHTKSDIVQYNQSSLSEIEDSLPPGKAVFYTWADPVGSRKLKWRCGK
SHGEVTQKDDMMTPINSGKKTIYLVSFFEGLQRIILFTEDPRVFKATYESEKAELAEQEI
VLALQDVGISLVNNYTKQEVAYIGITSSDVVWETKPKKKARWKPMSVKHTEKLEKEFKEY
TESSPSEDKVVELDTNIPVCFTPSGTNMKILQPHVIAIRRNYLPALKVEYSTSAHQSSFR
IQVYRIQIQNQIHGAIFPFVFYPIKPPKSVTMDSAPKPFTDVSIVMRSAGHSQISRIKYF
KVLIQEMDLRLDLGFVYALAELMTEAEVTEKTEIELFHKDIEAFQEEYKTASLADSSQVS
LYEYFHISPIKLHLSVSLSSGREEAKDSEQQEGLMAVRSLNLLLKSIGATLTDVQDVVFK
LAFFELNYQFHTASELQSEVIRHYSKQAIKQMYVLILGLEVLGNPFGLIREFSEGVEAFF
YEPYQGAIQGPEEFVEGMALGLKALVGGAVGGLAGAASKITSAMAKGVAAMTLDEDYQQK
RREAMNKQPAGLREGITRGGKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFKGVGKGLVG
AVARPTGGIIDMASSTFQGIKRATETSDEVESLRPPRFFNEDGVIRPYRLRDGTGNQMLQ
VMENGRFAKYKYFTHVMINKTDMLMITKSGVLFVTKGTFGQLTCEWQYSFDEFTKEPFIV
HGRRLRIEAKERVKSVFHAKEFGKIINFKTPEDARWILTKLEEAREPSPRF
NT seq
9516 nt
NT seq
+upstream
nt +downstream
nt
atggtgttcgagtcggtggtcgtggacgtgttgaaccggttcttgggggactatgtggtg
aacctggacacgtcccagctcaccctgggcatctggggaggagctgtggccttgaagaat
cttgaaattaaagaaaacgctctgagtcaactggatgtaccatttaaagttaaagttggt
catataggtaatcttaatcttataattccgtggaaaaacctgtatactcaaccagttgaa
gctgtcctgggagacatttatttactcatagtgccttcttctaaaataaaatatgatcct
ttaaaagaagaaaaacaactcttggaagcaaaacaacatgaacttaaacgaatagaagaa
gcaaaacaaaaagtagctgatcaagaaaaacttcgggtggagaaacaggacacttttacg
gaaaaattaattactcagatcataaaaaatcttcaagtcaaaatttccaacatccatatt
cgttatgaggatgatatcacaaatcgagacaacccactgtcatttggtatttcccttcaa
aatctcagcatgcagacgactgatcaaaactgggttccatgtttacatgatgaaactgag
aaactattttgtaagttaatccgactggataacctttttgcctattggaatgtgaagtct
cagttgttttaccttaatgattatgatgaatcattggacagcttgaagaagggcattgtc
aatggaaatattgttccgaaaggttatgattttgtgtttcgccccatatctgctaatgcc
aaacttcagatgaatcggcgatcagattttgacttttctgcccccaagataaacctggat
gttgagttacatgacatagcaattgaacttaataaaccacagtatttcagtgttatggag
cttcttgaatcagttgatatgatgacgcaaaatctgccatataggaaattcaaacctgat
gtacctcttcactatcatgccagagactggtgggcttatgctatacacggtattcttgaa
gtaaatgtctgcccccggttacggatgtggtcatggaagcatattagagaacacaggcaa
aaaatgaagcagtataaagaactgtataaaaaaaagataacaactaagaagccaactggt
gaaattctcatgtctttggaggagttggaaaagaccttggatgtatttaatataactata
tcaagacaacaggcagaagttgaggtaaagaaagctggatataggattttcagagaagga
gcaaaagattcagaggaaaataaaggatggtttagctggctgtggacttggtcagaacca
agaagtaaagaacaaccagatgttaagcctggaattcttgaagaaatgttgacctctgaa
gaaaaaactttactctatgaagcaattggctatagtgaaacagcagttgatccaaccttg
ccaaaaacatttgaagccatgaagttctttgttcacttgaaaagtatgtctattgttcta
agagaaaaacgagagacacctgagctgttagatattgtagtggaagaatttagcactttg
attgtgcaaagaccaggagcacaagccattaaatttgaaaccaaaattgattcatttcat
gttactggcttaccagataattcaacaaaaccccgcctcctttcttcattggatgatgct
acgtcactcttccaaattatatttgagataaatccattagatgaaactgttgctcaaaga
tgtatcatagaagctgaacctttagaaatgatatatgatgcaagaacagtgaatagtata
gtggaattcttcagacctccaaaagaggtaaatctagcacagctcacgtcagcgactttg
acaaaacttgaagaatttcgtgacaagacagcaacaggtctactgtatattattgaaaca
cagaaagttcttgatctcaaaattaatttgaaggcttcatatgttattatcccacaaggt
ggaatttttagccctacatcaaatctactacttttggatcttggtcatctaaaggtgaca
agtaaaagtcgttcagaattgccagatatgaaaccagctggggccagacttgaagagatc
atgcatagagcttatgattcctttgatgttcagcttacaagcatacagctgctttacagc
acagttggcgatgattggagagaagcacgaaaactcagtgtatctacacagcatattttg
gtacctatgcacttcaatgtggagctctctaaggccatggttttcatggatataaggatg
cccaaattcaagatttttggaaagttaccactgatttctttacgaatctcagataaaaaa
ctgcaaggaattttggaattgattgaaagcattccgaaacccacacctgctactgaaaca
tatgcccctgccaaaccatttcagattcaaaggtccacttctttgggaacatcacagatt
tcacagaaaatgcttcctttcttggaacttccatgtgttgatgatgattcagaggaagaa
ttttttgatgcaccatgtagtcccttggacgaacctcttcagtctcctactgaaattcaa
agttaccaaaaaaaatttcaaaagccagattgttcaaaaaatatgattcagtataaaata
agatttgaagtgccagaggttttgattcagttttatcaccttgttggagattctgaacta
cctgtggtagaagttgatgttttaggattgggcacagatgttgaacttagaacatttgat
ttgaaagcaaatgcctttttgaaagagttctgcctaaaatgcccagaacacactgatgca
aacaagaaaccaatttatttgattacaacactggataatacgatggaagatctgctaaca
ttggaatatgtgaaggctgaaaagaatctacccaacttgaaaagtacttataacaatgct
gtgcaactgattaaggtgaatttttcctctttggatattcatttacatactgaagcactt
ctgaatacaataaattattttagtaatataattccacaattggaagaaaaaccagccaca
gtgtctgttgcagagactgaagacaaaggagaggtcgttaaaaaaatgcctttaaaacta
tccaagaacgaagatgttattaccttgcagattttagcagaattatcttgtttacagatc
tttattcaagatcagaaacgtaacattgctgaaattaagatcgaagggcttgattctgag
atcattatgaggcctgctgcaactgaaataaatgcaaagctaaggaatataattgttttg
gattctgataagacagctgtgtacaaaaaggctgtttacatcactggaaaagaagttttt
agcttcaaagtgatttcttttgtggatgcaactgctggttctgcatacacagatatgaat
gtggttgacattcaaattaatttaactgttggttgcattgaagtagtttttgtcacaaaa
tttctttattctatattggcttttatagataattttcaagcggctaaacaagccttggct
gaggctactgttcaggcagcaggaatggctgctactggtgtaaaagaattggcacagagg
agttctagaatggcgttggatgttaacatcaaagccccagtggtggtcatcccacagtct
ccagtttctgaaaatgtttttgttgctgattttggactaattacaatgacaaacacattc
catataataacagagagccagagcaaccccccacccgttattgatttgataacaataagg
ttgagtgaaatgcgactatacaggacgcaatttattgatgatgcataccaggaagtacta
gatctgctattgccattaaatcttgaggtgattgttgagcgaaatttatcttgggagtgg
taccaggaagttccttgttttaatgtaaatgctcagctaaagcccatggagttcattctt
agtcaagaagatataacaactatttttaaaacattatatagcaatatatggtacgaagaa
ggtggtggtgcctcatctgcaggagtaaaagatcagagtagtgttaatagtggagctact
aatgcttcacaccatttagaaggaacaactgtagtgactgctgccgtggtggaaatacat
tcacaggcctctcaagttaagacaacactgaatatgagcttcaggaccgactatctcacc
atggtactgtatagtccaggtcctgaacagacttcctttacagatgttcgtgatccttct
ctgaaacttgctgaatttaagttggagaatatcataagcactgcaaaaatgtatacagat
gactcaacattttcttccttctcattaaaaaactgtattttagatgataaaaggtcccat
gtcaagaaggcaactcctagaatgataggactgacagtcgggtttgacaaaaaggacatg
atggatgtaaagtatagaagagtcagagatggttgggtgactgatttagtccttcaagaa
acatatatttgtgcaagtgtggaatttctgctgacagttgcaaatgtctttcttgaggcc
tacaccacaggcactgctgtagaaaccagtgttcaaacatggactgctaaggaagaagta
tctgtacaggaatcagagaagtgggaagttaatattattattaaaaatcctgaaattgtg
tttgtggctgatatgacaaaaagtgatgctcctgcattagtcattacaacacaatgtgaa
atttgttggaaaggtgaccttgagaataatacaatgactgctgccattaaagatcttcaa
gtgagagcatgcccatttcttccaggcaagaggaaaggcaaaatcacgactgttttgcag
ccctgtgacttgttctatcaagctactcaaataggtacagatccacaagtgattgatata
tcaataaagtccctcacactaaaggtttcaccggttatcataaatactgtgattaccata
acatcagcactttatacatccaaggataccatcccacaagaaactacttcttctacagta
cacttatgggaaaagaaggatacaaagaatttaaaaatgtggtttcttgaagagccaaat
gaagttgaaaacaaagctcccacaactgaattgatactcaaaggagagatgatgagagtg
aacattgattctatttttatagttcttgaggctggaattggtcctagaacagtgcctatg
ctgttggcaaagtcacgtttttcaggggagggcaaaaactggagttctttgataaatctc
tactgtcagcttgaactagaagtgcattattacaatgaaatgtttggtgtatgggagcct
ttgcttgaacccttagaaattgatcagactgaggattttagaccatggaatcttggaatc
aagatgaaaaagaaagcaaaaaaggccattgttgagtcagatactgaagaagaaaattac
aaagtgccagaatataaaactgttatcagtttccattcaaaagaccaactaaacattaca
ttatccaaatgtggccttgtaatgttaaataatttagtcaaggcatttacagaagctgcc
actggagcttcaactgtcttcatacgggatctagcgccatttatgattttaaattctctt
ggacttactgtctctgtttcaccaagtgattcttttagtgtacttaacgttccattggca
aaatcatatgtattgaaaaatgaggagagtttaagtatggattatgtgggaaccaaagac
aatgatcatttcaatgcaatgaccagcctaagcagtaaactcttcttcattcttctcaca
cctgctaaccactctactgctgataaaatccctttaacaaaagtgggacgacgactgtac
actgtaagacacagagcatctggggttgaaagatcgattgtttgtcaagttgatggagtg
gaaggaagtaagaagataacaattcgctccccagtgcagattaaaaatcatttttcaatt
ccactttgtgtttatgaagggaacactttattgggaacggcttcacctggaagtgaattc
aacataccattaacatcttaccgatcacccctttctctgaagccagaagatgaggactat
caagcgtgtgaaagaattgactttgaagaaattataaaaaatgatggcacttttctaaaa
aagaaatgtaaatctaaaaacactgctaagaaaccatttaacattcatgttgtcccggaa
aaagataatttgtcttctctgtcagtgtattcagaagatggttgggacttaccatacata
atgcatttgtggccacctatcctgctccgaaatcttcttccttataaaattgcttattat
atagaggggattgaacataaagtttatactctaaatgaaggacattcagcccacatttgt
actgtgcatttggaaaaagccagactacatttaaaattacttgactatcttaatcatgat
tggaaaagtgaatatcatataaaacctaatcagcaagatattagtttcatcaattttacc
tgtgttacagaaatagaaaagactgatttagatattgctatccatgtgacttataatatt
ggccagacagttgtggcatttcatagtccttactggatggtcaataaaaccagtcgaatg
ttacagtataaagcagatggaattcatcgaaagcatccacctaattataaaaagccagtt
ctgttttcttttcaaccaaagcacttttttaataataataaggttcagcttatgataact
gatagtgaattgtcggatcagttttcaattgatactgttggtagtcatggagctgttaaa
tgtaaaggcctgaaaatggactatcaagttggtgtcactatagacctcagcagttttaac
attaccagaattgtgacatttactcctttttatatgatcgaaaacaaaagcaaatatcat
atatcagtggccgaacagggaaatgataaatggctctctcttgatttggagcagtgtatc
cccttttggcccgaggatgcttctaatgcacttcttattcaagttgaaagaaatcaaggc
cctcccaaaaagatacattttaacaagcaagcaaattgtattttattgcgtctggataat
gagcttggaggtattatagcagaagttaatttggctgagcattctacagttattacattt
tcagattatcatgatggagcagctccattcctattaataaatcacaccaagagtgatatt
gttcagtataatcaaagttctctcagtgaaatagaagattccctccctcctggaaaagca
gtattttatacatgggctgatccagtgggctctagaaagctgaagtggagatgtggaaaa
agccatggtgaagtaacacaaaaggatgatatgatgacacctataaattcggggaaaaag
accatttatttagtttcattctttgaaggcttacaacgcattattttattcactgaagat
ccaagggtatttaaagcaacatatgaaagtgagaaagcagagttagcagagcaagaaatt
gtgttggccttacaagatgttggaatttctctcgtcaacaactacacaaagcaagaagta
gcctatattggcattacaagttctgatgtggtttgggagacaaagcccaagaagaaggca
agatggaagccaatgagtgtaaagcacactgagaagttagagaaagaatttaaggaatat
actgaatcttcaccttcagaagataaggttgttgaattggacactaacattccggtttgc
ttcacacctagtggtactaacatgaaaattctgcagccacatgtaatagctataagaaga
aattatcttccagcattgaaagtagaatatagcacatccgcacatcagtcatcatttaga
attcaagtttacagaatacagatccaaaaccagatacatggtgctatatttccatttgtg
ttttatccaattaaacctcccaagtcggtcaccatggattcagctccaaagccctttaca
gatgtcagtattgtcatgagatctgcagggcattcccagatatcacgtattaagtatttc
aaggtgttgatccaagaaatggacctcaggttagatcttgggtttgtctatgctttagca
gaacttatgacagaagccgaagtgactgaaaaaaccgagattgaactttttcataaagat
atagaagctttccaagaagaatataaaacagcttcattagcagattcatcacaagtcagt
ctctatgaatacttccatatatctcctatcaagttgcatttaagtgtttcactgagttcg
ggcagagaagaagctaaagattcagaacaacaggaaggactgatggccgttcgttcttta
aatcttttgctgaagagtattggtgccacccttacagatgtacaagatgtagtttttaag
cttgcattttttgaactgaactatcagttccatacagcatctgaactacagtctgaagta
ataagacactattcgaaacaggccattaagcaaatgtatgtactcattcttggacttgaa
gttttgggaaatccctttggcttgattagagaattttctgaaggtgtggaagcatttttt
tatgaaccttaccagggagccatccaaggtcccgaagagtttgtggaggggatggcatta
ggactgaaggcactagttggtggagctgttggtggattagctggtgctgcctccaaaatc
accagtgctatggctaagggggtggcagccatgactctggatgaagactatcaacagaag
agaagagaggccatgaataagcaaccagctggtctcagagaaggcatcactcgcggagga
aaaggcttagtgtctggttttgtaagtggcataacaggaattgttacaaaaccaatcaaa
ggagctcaaaaagaaggagcagctggtttctttaaaggtgttgggaaaggtttagttgga
gcagtggcaaggccaacgggaggcatcatagacatggccagcagtacatttcagggaata
aaaagagctacagagacttctgatgaagtggagagcctgcgacctcctcgattctttaat
gaggatggagttatcagaccttacaggttgagggatgggactggaaaccagatgttacag
gtcatggaaaatgggagatttgcaaaatacaagtattttacccatgtcatgatcaataaa
acagatatgttaatgataactaaaagtggtgtattgtttgtaacaaaaggaacatttgga
cagcttacatgtgagtggcagtacagttttgatgagtttaccaaagagccattcattgtt
cacgggaggagattacgcattgaagcaaaggaacgggtgaagtctgtgtttcatgccaaa
gagtttggaaaaataattaacttcaagaccccagaggatgctaggtggatcctcacaaaa
ctagaagaagcaagagaaccttccccgagattctga
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integrated database retrieval system
