Neomonachus schauinslandi (Hawaiian monk seal): 110581427
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Entry
110581427 CDS
T08474
Symbol
SETX
Name
(RefSeq) probable helicase senataxin
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
nsu
Neomonachus schauinslandi (Hawaiian monk seal)
Pathway
nsu05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
nsu00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
110581427 (SETX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nsu03021
]
110581427 (SETX)
Enzymes [BR:
nsu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
110581427 (SETX)
5.6.2.5 RNA 5'-3' helicase
110581427 (SETX)
Transcription machinery [BR:
nsu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110581427 (SETX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
AAA_19
UvrD-helicase
AAA_30
AAA_22
Viral_helicase1
ResIII
SLFN-g3_helicase
Helicase_RecD
AAA_16
nSTAND3
TniB
DEAD
UvrD_C_2
Motif
Other DBs
NCBI-GeneID:
110581427
NCBI-ProteinID:
XP_021546948
UniProt:
A0A2Y9H5P5
LinkDB
All DBs
Position
13:complement(89439132..89500595)
Genome browser
AA seq
1459 aa
AA seq
DB search
MAEGPLRPSPSDRNENKPDILNERGLTENDFKSMDLRTASPSSSVQRDKDTTVSLKKSSP
KLRTYSKPIRRVPLSKTPKKTHSDTKKGQNKSSNYISCRTTPAIVPPKKFRQCPEPTSTV
EKLGLKKAPRKAFDLSQRSLEYLVQLRDHGKTVGVVDTSKKTKLISPQTLSVRNNKKLLT
SQDLQLRRQMRPKSQQNRQGLLDYENKDTTRAGLCPAQNSDILVPESDGSDYSYKGGTEV
VANNTGKQLIKCVSSEPEPMKTKYVSQVTSDACLLNQSASVVLNGRIPTKEIIVSASADP
LGGGDPTVHHLELTILKDGEPESNSDTEDENIFLTQHDPEDMDLCSQMENGNEKLIEVVH
GKDTAQVEEDSVSRPQLESWSSTKCKYKDCVETPKNQGDYCSKHCEAKAADEDVFRKPGL
PLSASKPSRPSTAKIFSSSSTSRIANLSKSLESASALPPALKNKSNGAQAVLKVPQPASV
LSPKPVGEVKSLCNVLHPQTPSNSIRQGYKLTFGESKSFSASSPVHILLSSQSISDTFVK
EVLKWKYEMFVNFDQCGPPASLCQSISRPVPVKFQDCGDYFNVFFPLMILNTFETVAQEW
ISSPNKEKFYQLHLRKFPADYKKYWEFVVHLEECELAKQLHPKENDLVFLVPERQNGEKK
DTERNRMQDLREYHCGYIHKFRRTSVMRNGKSECSLSIQTQDNLPVNLNELVKCVVISSL
VTTQRKLKAMSLLSGRNQLARAVLNPNPMDFCTKDLLTTTSERIIAYLRDFNEDQKKAIE
TAYAMVKHSPSVAKICLIHGPPGTGKSKTIVGLLYRLLTENQRKGHSDENSNAKIKQNRV
LVCAPSNAAVDELMKKIILEFKEKCKDKKNPLGNCGDINLVRLGPEKSINNEVLKFSLDS
QVNHRMKKELPSHVQEMHRRKEFLDHQLDELSRQRALCRGGREIQRQELDEKIAKVSKER
QELASKIKEVQGRPQKTQSIIILESHVICCTLSTSGGLLLESAFRGQGGVPFSCVIVDEA
GQSCEVETLTPLIHRCNKLILVGDPKQLPPTVISMKAQEYGYDQSMMARFYKLLEDNVEH
NMIGRLPILQLTVQYRMHPDICLFPSNYVYNRNLKTNRQTETNRCSSDWPFQPYLVFDVG
DGSERRDNEPAEVDTVDGFQGRQKDCVIVTCVRANTMQGSIGFLASLQRLNVTITRAKYS
LFILGHLRTLMENQHWNHLIQDAQKRGAIIKTCDKNYRHDAAKILKLKPVLQRSLTHPPA
VAPEASRPQGGLPSNKLDSEFAKTSFTSSLYHTPPDSKESSGTVTTKDPERPLLQDRLRD
PRLLRRMGLDPEAKGVCLRDPQPLSPQHPGATPPSGEPGFPGSHQDLGSAQQSTARGTAL
NNYKPHAQCEPPAAGTDVSTSKRRCDWEGGLNHRRETRAFSEGDQDRWSPESHYSKRSPG
WDKRGLEKEDCSSKKRRLL
NT seq
4380 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaggtcctctaaggccttcaccttctgatagaaacgagaacaagcctgatatt
cttaatgagagaggtctgactgaaaatgattttaaaagtatggacctaaggacagcgagt
cccagttcaagtgttcagagagacaaagacactacggtttcactgaagaagtcttctcca
aagcttcgtacttattccaaacccattagaagagtcccactttctaaaactcctaagaaa
acacattcagataccaagaaagggcagaataaaagttcaaattatataagttgtaggaca
actcctgctatagttccaccaaagaaatttcgccagtgccctgaaccaacttcaacagtt
gagaaacttggtctgaagaaggctcctcgtaaggcatttgatttgtctcagcgatctcta
gagtatttagttcagttacgcgaccatggtaaaactgttggagtggttgatactagcaaa
aagactaagttaatttctcctcagactctctctgtcagaaacaataagaaactgctgaca
agtcaagatcttcagttgcgaaggcagatgagacccaaatcacaacaaaatagacaagga
cttttggattatgaaaataaagatactacaagagcagggctgtgtccagcacagaattct
gacatacttgtcccagaatcagatggttcagattatagttataaaggaggaactgaggtg
gttgctaacaacactgggaaacaattaataaaatgtgtgtcttcagaaccagaacccatg
aaaacaaaatatgtgtctcaggtgaccagtgatgcttgtcttttgaaccagtctgcttct
gttgtgttgaatggaagaataccaacaaaggaaatcattgtctctgcttcagcagacccc
ttaggcggtggtgacccaacagtacatcatttagaattgacaattttgaaagacggagag
cctgaatccaacagtgatacagaagatgagaatatatttctaacacagcacgatcctgaa
gatatggatttgtgttcacagatggagaatggtaatgagaaactcattgaagtagttcat
ggcaaagatacagctcaggtggaagaagattctgtaagtcggcctcagttggaatcttgg
agtagcacaaaatgtaaatacaaagattgtgttgaaaccccgaaaaaccagggtgactac
tgctcaaaacactgtgaagctaaagcagcagatgaagatgtatttcgtaaacctggcttg
cccctttctgcatccaagccttcgagaccttccactgctaagatttttagctcaagtagt
acttcacgaattgctaatctttccaagtctttggaaagtgcctctgcacttccaccagct
ctaaaaaataagtcaaatggggcacaggctgttttgaaagtcccacagccagcctctgtg
ttgtctccaaagccagtgggtgaagtgaagagtttgtgcaatgttcttcatcctcagact
ccaagtaattccatcaggcaaggttacaaactgacgtttggtgaaagcaaatccttctca
gcttcctctccagtccacattctcttgtcatcgcagtccatctctgacacctttgtcaaa
gaggtcttaaaatggaaatacgaaatgtttgtgaactttgatcagtgcgggcccccagca
agcctttgtcagtccatctcaagacctgtgcctgtcaaatttcaagattgtggagattat
tttaatgtttttttccctttgatgatattgaatacttttgaaacagtggcacaggagtgg
atcagctctccaaacaaagagaaattctatcagttgcatttacgaaaatttcctgctgat
tataaaaaatactgggagtttgtggttcatcttgaggaatgtgaactagctaaacagctt
catccaaaggaaaatgatttggtgtttttggttcctgaaagacaaaatggagagaagaaa
gatacagagagaaatcgcatgcaggatctccgtgaatatcattgcggttatattcataag
tttcgccgcacttcagtcatgcgcaatgggaaatctgagtgttccctttccatccagact
caagataatttgccagtcaatttaaatgaactcgtgaaatgcgttgtaatcagttctctg
gtaactacacaaaggaagttgaaagccatgtctttgttgagtggacggaaccaactggcc
agagctgttctgaatccaaaccccatggacttctgtacaaaagatttactaactacaaca
tctgagagaattatcgcctacttaagagatttcaacgaagaccaaaagaaagcgatagaa
actgcatatgccatggtcaaacactccccgtcagttgccaagatctgtctgattcatgga
ccacctggaacaggaaaatcaaaaactattgttggcctcctgtaccgcctgctgacagag
aaccagaggaaggggcattcagatgaaaactccaatgccaaaatcaaacaaaaccgtgtc
cttgtgtgtgcgccttccaacgcagctgttgatgaacttatgaaaaaaatcatcctcgaa
tttaaagaaaaatgtaaagacaagaagaatcctttggggaactgtggagatataaattta
gtacgtctcggtccagaaaagtctattaataatgaggtcctaaaattcagtttggacagc
caagttaaccacagaatgaaaaaagaattaccttctcatgttcaggagatgcatagaaga
aaggaatttctagatcatcaacttgatgaactttcccgccagcgtgctttatgccgagga
ggaagggaaatacagaggcaagaattagatgaaaaaattgcaaaagtttcaaaagagagg
caggaactagcttctaaaattaaagaggttcaaggacgcccacaaaaaacacagagcatc
atcatcttagagtctcatgtcatctgctgcacattgagcacaagtggtggtttactgctt
gagtctgcttttcgtgggcaagggggtgtccccttcagttgtgtcattgtcgatgaggcc
gggcagtcttgtgaggttgagactcttactccactcatccatcgttgtaacaagctcatc
ctcgtaggagatcctaaacagctccctcccacggtcatttctatgaaagcacaggaatat
ggctatgaccagtcaatgatggcgcgcttctacaagctgctggaagacaatgtggagcac
aatatgattggcaggctgcctattttacagcttactgttcagtacaggatgcacccagac
atatgtctcttcccctctaattatgtttataacagaaacttgaaaacaaatagacagact
gaaaccaatcggtgttcatcagactggccatttcaaccttacctggtgtttgatgtcgga
gacggttcagaaagacgggataatgagccagcagaagtagataccgtggatgggttccag
ggccggcagaaagattgcgttattgttacgtgcgtcagagcaaataccatgcagggctca
attggatttctggcaagtttgcagagactgaacgtcaccatcacacgagccaagtacagc
ctcttcatcctcggacatttaaggaccctcatggaaaatcagcactggaatcacctgatt
caggatgcacagaagcggggtgccattatcaagacgtgcgacaaaaactataggcacgac
gcagcgaagattctgaagctcaagcccgtgctgcagagaagtctgactcaccctcctgcc
gtagccccagaggcgtccagaccccagggcggcttgcccagcaacaagctcgacagtgaa
tttgccaagacatctttcacttcttccctatatcacacgccccctgactccaaggaatct
tctggtactgtcacgacaaaggaccctgaaaggcctctccttcaggaccggcttcgggac
ccacgactgcttaggaggatgggcctagaccccgaagccaaaggggtgtgcctaagggat
ccgcagcccttgagcccccagcatcccggagcgacacctccctcgggcgagccaggcttc
cctgggagtcaccaggatctgggtagcgcacagcagtccactgccagaggaaccgctctg
aacaactacaaacctcacgcgcagtgtgaacctccagctgctgggactgatgtctccaca
agtaaaagaagatgtgactgggaaggagggctcaaccatagaagagagacccgggctttc
agtgagggcgaccaggacaggtggagcccggagagccactactcgaagaggagccctggc
tgggacaagaggggactggagaaggaggactgcagctcaaagaaaagaaggcttttatag
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integrated database retrieval system
