Neomonachus schauinslandi (Hawaiian monk seal): 110585352
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Entry
110585352 CDS
T08474
Symbol
SPG11
Name
(RefSeq) spatacsin isoform X1
KO
K19026
spatacsin
Organism
nsu
Neomonachus schauinslandi (Hawaiian monk seal)
Pathway
nsu05014
Amyotrophic lateral sclerosis
nsu05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
nsu00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
110585352 (SPG11)
05022 Pathways of neurodegeneration - multiple diseases
110585352 (SPG11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nsu03400
]
110585352 (SPG11)
DNA repair and recombination proteins [BR:
nsu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
110585352 (SPG11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
110585352
NCBI-ProteinID:
XP_021551238
UniProt:
A0A2Y9HHH1
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All DBs
Position
9:complement(85083844..85166094)
Genome browser
AA seq
2443 aa
AA seq
DB search
MAAEKAAGGAAGWGTGSAKAMERVLPMLLVPVPVEATGRLGSRAQLHREQEVLGSLTAAG
SLQVLSLAPGGRSGGTCCLTGPFRHFVWEDSRNSSSPTDKPKLLALSENYELFIYEFNLK
DGRCDATILYSCSEETLKKLIEDQNISASLLSLRILSFHNNKSLLFINKCIVLHLVFPER
DAEIGVLNCLTLPLPAQAVDRIIDTQLCRGILFVLSSLGWIYIFDTVDGTHVAHVDLALV
QEDMCNEQREEPAKISSFTSLKVSQDLDVVVVVSSSNSAVALNLDLYFRQHPGHLLCERT
LEDIPIEGPKGIDEDDPVNSDYNMKLTKFSFQVDRSWKAQLSSLNETIKSSKLEVSYCAP
WFQDILHLESPESGNHSTSMPGWAFIPQDIMHSHYKFPQKDHANTSDPGRSWKIMNISEQ
EEPVELTCMSVTGFSALFTWAVERMGCTIVLWDLETQGMQCFSLDKKCIPIDTSGDQQLC
LVLTENGLSLILFGLTQEEFLNRLMIHGSASIVDSLCHLNGWERCSMPIHALEAGIENRQ
LDTVDFFLKSKENLLNPSSKSSVPDQLDDFPSHLYLRNVEKLTPALDLLCSAIRESDSET
QSKHFSEQLLNLTLSFLNKQIKELFVHNEELDEHLQKGVNILTSYINELRTFMIKFPWKI
IDTGDEYDVNENVPKVRESNIWEKLSVEEVIANAILNNKIPEAQTFFRISNHSAQRLEEL
IRIGLNLVFDNLKKNNIKEASELLKNMGFDVKDQLLKICFYTTDTNIRDFLVEILKEKNY
FSENEKRTIDFVHQVEKFYSGHFQENMQIQSFARYWIKERDFFKHKSVLDSLLKYDPKDK
FNKQDHRVVLNWAQWWTQLTQESILLPRISPEEYKSYSPEALWSYLTARHDWSSIILWIG
EFQTQNSCASLEQDRWPLLTVDVIDRHTCCNSYMRNEILDQLARNGIFLKSELEDFELFL
LRLNRIGGVMQDALPIQNYRSKEGWDFHSHFILYCLEHGLQYLLYVYLDCYKLSPSNCPF
LEKKELHEAYPWFEFLVQCRQVSSNLTDPKLIFQASLANAQILIPSNQASISSMLLEGHT
LLALATTMYAPGGVSQVVQNDENETCLKKVDPQLLKMALTPYPKLKTALFPQYTASNVLP
PDITLYHLIQSLLPFDPSRLFGWQSANTLAVGDAVSHLPHFSSPDLVNKYAIVERLNFAY
YLQHGRPSFAFGTFLVQELTKSKTPKQLIQQVGNEAYVLGLSSFYIPSVGAACVCFLELL
GLDSLKLRVDMKVANIILSYKCRNEDAQYSCIRESLAEKLSKLAVGEKATIEELLILLEE
GIWNSIQQQEIKRLSSESSSQWALAVQFCRLHNVKLSTSYLRECAKANDWLQFIIHSQLH
NYHPEEVKSLLQYFSPVLQDHLRLAFENLTSVSNSRMDSDQVCSRAPQELQRNKEEMADF
FEVLLRCSEEPNSWCWLLAEAVKQQAPILSVLASCLQDASTIPCLCVWIITSVEDSVAAE
ATEHIRGSMEEHMWDLQDLSVIWRTLLTKQKSKTLIRGFQLFFKDSPLLLMMEMYELCMF
FKNYKEAEAKLLEFQKSFETVETAATRVHATIPALWLKEQVCFLLKLMLQQCGTQYELGK
LLQLFVGIEKLFSDGPDVKKLCVLSQILKDTSIAINHGIISGYSLENFQHECRSILEKLE
TEGQFALARRVAELAELPVDNLVIEEITREMQTLKHTGQWSLKQARIDFWKKCHESFQKN
SISSRAASSFFSAQAPQAPEPPAEEGQSRAEERQLLLTLAAHWLAQEGLGPVDELEELEK
QIWLCRITQHTLREKQETEPRFSQHISTSGELSFDSVASKFSLSMLAALNTSKYLEINGL
PSKETCENRLDWKGQESLDFLIGRLLDDGCVHEASRVCRYFHFYNQDVALVLHCRALASG
EASVDDLRPEIHALLQSAERLEEEEPGIPLRKVQSTSSLDSQTFVMLPPCDEVVTNLETL
TSKCLHGKSYCRQVLCLYELAKELGCPYTDVAAQDGEAVLRAVLASQRPDRCKRAQAFLS
TQGLEPDMVADLVAEEVTRELLTPSEGTGQKQMFTPAEESQTFLQLTTLCQDRTLVGMKL
LDKISSVPHGELSCTTELLILAHHCFTLTCHMEGIIRVLQAARLLTDKHLAPNEEYGLMV
RLLTGMGRYNEMTYIFDLLHKKHYFEVLMRKKLDPSGTLKTALLDYIKRCRPGDSEKHNM
IALCFSMCREIGENHEAAACIQLKLIESQPWEDSLKDGHHLKQLLLKALTLMLDAAESYA
KDSCVRQALHCHRLTKLITLQIHFLNTGQNTMLINLGRHQLMDCLIALPRFYQASIVAEA
YDFVPDWAEILYQQVILKGDFNYLEEFKQQRLLRSSVFEEISTKCKRQQPADTAVKNLKK
LLTYCEDVYLYYTLAYEHKFYDIVNVLLKDPQTGCCLKDMLAG
NT seq
7332 nt
NT seq
+upstream
nt +downstream
nt
atggctgcagaaaaggccgcgggaggagctgctggctggggcaccggcagcgctaaagcc
atggagcgggttctacctatgctgttggtgccggtccctgtggaggcaacggggcggctg
ggatcccgggcgcagttgcacagagagcaggaggttctggggagcctaacagctgcaggc
agcctgcaagtgctttccttggcgccgggcggccggagcgggggaacctgctgcctcact
ggcccctttcggcactttgtatgggaggattctcgtaacagcagctcaccaacagacaag
cccaaactgcttgctcttagtgaaaattatgaactgtttatctatgaatttaatttgaaa
gatggaagatgtgatgcaaccattttgtatagctgtagcgaggagacattgaaaaagctc
attgaagatcaaaatatcagtgcttccttattatctttgagaattctgtcatttcacaat
aacaaatcactgttgttcatcaacaaatgtattgtcctacaccttgtatttcctgaaaga
gatgctgagattggagtactcaactgtttaacgttacccttgcctgcacaggcagtggac
aggattattgacacacagctctgcagaggaattctttttgttttgagtagtttaggatgg
atctacatctttgacacagtggacggtacacatgtagctcatgtggatttagcacttgtc
caggaagatatgtgtaatgagcagcgagaggagccagccaagatttcttcctttacttca
ctgaaagtgtctcaagacctagatgttgtagtggttgtcagctcctccaactctgcagtc
gctcttaacctcgatttgtatttcaggcaacacccaggacacctactatgtgaaagaact
ctagaagacattcctattgaaggccctaaggggatagatgaagatgatcctgttaattct
gactacaacatgaaactgaccaagttttcctttcaagttgataggtcttggaaagcccag
ctatcatcattgaatgaaacaataaagagctccaaactggaggtttcctattgtgctcca
tggttccaggatattttgcatttggagtcccctgaatctggtaaccacagtaccagtatg
ccaggctgggccttcattccacaggacataatgcacagccactataagtttccacagaag
gatcatgccaacaccagtgacccagggagatcatggaaaatcatgaacattagtgaacaa
gaggaacctgttgagcttacatgtatgtctgtgacaggattcagtgcactgtttacttgg
gcagtggaaaggatgggctgcaccattgtcctttgggatttggagacccagggtatgcag
tgtttctcccttgacaaaaagtgtattcctatagacactagtggagaccagcagctgtgc
cttgttttgacagaaaatggactctctctgattttgtttggattgactcaggaggaattt
ttaaatagactaatgatccatggaagtgccagcattgtggactctctttgccatctcaat
ggttgggagaggtgctcaatgcccatacatgcgctggaggctgggatagaaaatcgtcag
ctggacacagtagatttctttttgaaaagcaaagaaaatcttttgaatccatcctcaaaa
tcttctgtacctgatcagcttgatgactttccatctcatttgtatttaagaaatgtggaa
aagctgacaccagcattggatttactttgctcagcaattagagaaagtgattctgaaacc
caaagcaaacacttttcagaacagttgcttaatcttacactgtcttttcttaacaaacaa
ataaaagagctttttgttcacaatgaagaactagatgaacatctacagaaaggagtgaac
attttgaccagctacattaatgaacttcgaaccttcatgataaagtttccttggaagata
atagatacaggagatgaatatgatgtaaatgaaaatgttcccaaagtaagagagagcaat
atatgggagaaactcagcgttgaggaagttattgccaatgctattttaaacaacaaaata
ccggaggcacagactttcttcaggattagcaatcattctgctcaaagacttgaggagctg
attagaataggcctaaatttggtctttgacaacttgaaaaagaacaatataaaggaagcc
tctgaacttttgaagaacatgggctttgatgtaaaagaccagttgctcaagatatgcttc
tatacaactgatacaaatatacgggactttttggttgaaattttaaaagaaaaaaattat
ttttctgaaaatgaaaaaagaactatagacttcgtgcatcaagttgagaagttttattca
ggacatttccaagaaaatatgcagatccagtcctttgccaggtattggataaaggaacgg
gattttttcaagcacaaatctgttttggactcactcctgaaatatgatcctaaagataaa
tttaacaaacaggaccatagagttgtgttaaattgggctcaatggtggactcaactaaca
caagaatccatccttctccccaggataagtccagaagaatacaaatcatattctcctgaa
gccctctggagctatctcacagctcgccatgactggtcaagcattatcttgtggattgga
gaatttcagactcagaacagttgtgcttcgcttgagcaggacagatggccccttctgact
gttgatgttatcgatcggcatacttgctgcaacagctacatgaggaatgaaattttagat
cagctggccaggaatgggatttttcttaagtctgaactagaagactttgaactcttcctg
ctaagactgaaccgcattgggggtgtgatgcaagatgctctccccattcaaaactacaga
tccaaagaaggttgggatttccattctcacttcattctctattgtttggaacacggtctg
cagtatcttctctatgtctatcttgactgttacaaacttagtccttcaaattgtcccttt
ttggaaaaaaaagaattacatgaagcttacccttggtttgaatttttagttcagtgtcga
caagtttccagtaatttaacagatcccaaactgatcttccaggctagccttgcaaatgct
cagatactgattcccagcaaccaggccagtataagcagtatgctattggaaggacatacc
ctcctggcccttgctacgacaatgtatgcccctgggggtgtcagccaggttgttcagaat
gatgaaaatgagacctgtttgaagaaagtagatccccagttactgaagatggcattaact
ccttatcccaagctaaaaactgctctcttcccacaatacactgcctctaatgtcctgcca
cccgatattacgctttaccaccttattcagtcactgttgccctttgaccctagcagattg
tttggctggcagtctgccaacacactggctgtaggagacgcagtgagtcatctaccacat
ttttctagccctgacctagttaataaatatgctatagtggaacgtctgaattttgcatat
tatttacaacatggccggccatcatttgcatttggtacttttctggtccaggaattaacc
aagagcaagactcccaagcagctgatccagcaagtaggcaatgaagcctatgttttaggg
ctctcctccttctacataccttcagtaggagctgcctgtgtttgtttcttagaactgctt
ggcctcgacagcctcaagctcagagttgatatgaaagtggccaatatcattttgagctac
aagtgtagaaacgaagatgctcagtacagctgtatcagagagtctctagctgaaaaacta
tctaaactggctgtgggtgaaaaggccaccatagaggaattgcttatcctcttagaagaa
ggtatatggaacagcattcagcagcaggaaataaagaggttatctagtgaatctagcagc
cagtgggcattagcagtacagttctgcaggcttcacaatgtgaaactgagcacgtcttac
ctcagagaatgtgccaaagcaaacgattggttacagttcattattcacagccaactccat
aactatcacccagaggaggtgaaatctcttcttcagtatttcagtcctgtccttcaagac
cacttaagactggcttttgagaacttgacctcagtgtctaactccagaatggacagtgat
caagtctgtagcagggccccccaggaactccagagaaacaaagaagagatggctgatttt
tttgaagttctgctccggtgctcagaggagccaaactcctggtgctggctcctagctgaa
gcagtgaaacaacaagcccctatcctcagtgtcctggcctcatgtctccaggatgccagt
actattccttgtctctgtgtttggatcatcacgtctgtggaggacagtgttgcagctgaa
gcaacagaacacattcggggctcaatggaagaacacatgtgggaccttcaagacctctca
gtcatctggagaacattattaacaaagcagaagagcaaaactctcatcagaggtttccaa
cttttctttaaggattccccactactgttgatgatggagatgtatgaactgtgtatgttc
ttcaagaattataaggaagctgaagcgaaacttctggagttccaaaagagctttgaaact
gttgaaacggcagccacaagggtccatgctaccatccctgccctgtggctgaaggagcag
gtgtgtttccttctgaagcttatgctgcagcagtgtgggacccagtatgaactggggaag
cttttacagctctttgttggaatagaaaagctcttctctgatggtccagatgtgaagaag
ctctgtgtccttagccaaattttaaaggacacatccatagccattaatcatggaattatt
agtggctacagccttgagaattttcagcatgaatgtagatctattttggaaaaactggag
acagagggacagtttgctttggccagaagggtagcagaattagcagaactacctgtggac
aacttggttattgaagagataacacgggaaatgcagactttaaaacacactggccagtgg
tccctgaaacaagcaagaattgacttctggaaaaaatgtcatgagagttttcagaaaaat
tccatttcaagcagagcagcttcttcctttttctcagctcaggccccgcaggcgcctgag
cccccagctgaggagggccagagccgcgcggaggagcggcagctgctgctcacactggct
gcacactggctggctcaggagggcctggggcctgtggacgagctggaggagctggagaag
cagatctggctctgccgcatcacccagcacaccctcagagaaaaacaggaaacagagccc
aggttttcgcagcacatctcaactagtggggaactttcctttgatagcgtagccagtaag
ttttcactctccatgttggctgctctgaacacatcaaaatacttggaaattaatggcctt
ccatccaaagagacttgtgagaacaggctggattggaaggggcaggagtcactggacttt
ctgattgggcgcctgttggatgatggctgtgtgcacgaagcaagtagagtatgtcggtat
tttcatttctacaaccaagatgtcgccttggtgttgcactgcagagcactggcctcaggg
gaagctagtgtggatgacctgcgcccagagatccatgctctcctacaaagtgccgagcgg
cttgaggaagaagaacctggcattccactaaggaaagtccagagcacttcaagtttggat
agtcaaacatttgtgatgctgcccccctgtgatgaagtggtgactaatctggaaactctg
acaagcaaatgccttcatgggaagagctactgccggcaggtcctgtgtctgtatgaactt
gccaaggagctgggctgtccctacacagacgtggccgctcaggacggcgaggccgtgctc
cgggcggttttggcctctcagcggcctgacagatgcaagcgcgcccaggctttcctcagc
acccagggcctcgagccggacatggtggctgaccttgtggctgaagaggtgacccgggag
ctgctgactccatcggagggaacaggacagaagcagatgttcaccccagcagaggaaagc
cagacatttcttcagctgactacgctgtgtcaagaccgcacattggtgggcatgaagttg
ttggacaagatttcctccgttccccatggggaactgtcttgcaccacggagctgctgatc
ctggcccatcactgcttcacgctgacatgccacatggagggcatcatccgggtcctgcaa
gctgcccggctgctcacggacaaacacttggcccccaatgaagagtacgggctgatggtg
cgtctcctcactggcatgggaaggtacaacgagatgacctacatatttgacttgctgcat
aaaaagcactactttgaagtgctgatgaggaagaagttggatccgagcggcaccctgaag
acagccctcctggactacatcaaacgttgccgccccggggacagcgagaagcacaacatg
atcgctctgtgcttcagcatgtgtcgggagatcggggagaaccacgaggcagctgcctgc
atccaactgaaattgatcgagtcccagccctgggaggacagcctcaaggacgggcaccac
ctgaagcagctgctgctgaaagccctgactctgatgctggatgcggcggaaagttacgcc
aaggactcctgtgtgcgacaggccctgcactgtcaccggctcaccaagttgataacactg
cagattcactttctgaacacgggccagaacacgatgctcatcaacctgggccgccaccag
ctgatggactgtctcatcgctctacctcgcttctaccaggcttctattgtggccgaggcc
tatgactttgttcctgattgggcagaaatcctctaccaacaagtgattcttaaaggagac
tttaattacctggaagaatttaagcagcaaaggttattaagatctagtgtatttgaagag
atttccacaaaatgtaaacggcagcagccggcagacacagctgtgaaaaacctgaagaag
ctactcacatactgtgaagacgtctacctgtattacacgctcgcgtatgaacacaaattt
tatgacattgtaaatgtgctgctgaaggaccctcagactggctgctgtctgaaggacatg
ctagcaggttag
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integrated database retrieval system
