Neomonachus schauinslandi (Hawaiian monk seal): 110586641
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Entry
110586641 CDS
T08474
Symbol
SKIV2L
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
nsu
Neomonachus schauinslandi (Hawaiian monk seal)
Pathway
nsu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nsu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110586641 (SKIV2L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsu03019
]
110586641 (SKIV2L)
Enzymes [BR:
nsu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110586641 (SKIV2L)
Messenger RNA biogenesis [BR:
nsu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
110586641 (SKIV2L)
mRNA degradation factors
3'-5' decay
Ski complex
110586641 (SKIV2L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
HAS-barrel
DUF3516
Motif
Other DBs
NCBI-GeneID:
110586641
NCBI-ProteinID:
XP_021552572
UniProt:
A0A2Y9HLS8
LinkDB
All DBs
Position
8:complement(117777138..117788838)
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AA seq
1246 aa
AA seq
DB search
MMETERLVLPPPDPLDLPLRPVELGCTGRWELLNVPGAPESTLPHGLPPCAPDLRQEAEQ
LFLSSPAWLPLHGVEHSTRKWQRKMDPWSLLATQGAPVPSDLQAQRHPTTGQILGYKEVL
LENTDLSATTSLSLRRPPGPISQSLWGNPTQYPFWPGGMDEPTIIDLSTREEAEEEIDFE
QDLLTVPPGFKKGVDFAPKDHPAPAPSLLSLSRLLEPLDLGGGDEDESEAVGQPGIPRGD
TVSTSPCSASLARASSLEDLVLKEASTAVSPPEPPKPLPQEQWAIPVDVTSPVGDFYRLI
PQLAFQWAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTS
PIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWV
IFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVIST
VARPVPLEHYLFTGNSPKTQGELFLLLDSRGTFHTKGYYAAVEAKKERMSKHAQTFGAKQ
PTHQGGPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEI
HLFLQRCLARLRGSDRQLPQVLHMSELLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLF
ATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDSTGTVILLCK
GRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLLRVDALRVEDMMKRSFSEFPSRKDSK
AHEQALVELTKRLGALEEPDTTGQLVDLPEYYSWGEELTETRSLIQRRIMESVNGLKSLS
AGRVVVVKNQEYHNTLGVILQVSSNSTNRVFTTLVLCDKPVCEDPQERAPATPDVPYPDD
LVGFKLFLPEGPCDHTVAKLQPGDVAAITTKVLRVNGEKILEDFSKRLQPKFKKDPPIAA
VTTAVQELLRLAQAYPAGPPTLDPVNDLQLKDVSVVEGGLRAHKLEELIWGAQCVHSPRF
SAQYLKLQERMQIQKEMERLHFLLSDQSLLLLPEYHQRAEVLRTLGYVDEAGTVKLAGRV
ACAMSSHELLLTELMFDNALSALRPEEIAALLSGLVCQSPGDPGEQLPSTLKQGVERVRA
VAKRIGEVQVACGLNQTVEEFVGELNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRCI
QRLAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLYTQ
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atgatggagaccgagcgactcgtgctgcctcctccagatcccctggatctgccccttcgg
ccggtggagctgggatgcacagggcgctgggagctgctgaatgtgcctggggctccagag
agcacccttccccacggcctccctccctgtgccccagatctgcggcaggaagcagagcag
ttgtttttgtcatctccagcctggttgcctctgcatggtgtggagcactccacccgaaaa
tggcagaggaaaatggatccctggtctctcctggccacacagggggccccagtgccctcc
gaccttcaggcccaaagacacccaaccacaggccagattctgggctacaaagaggtcctg
ctggagaatacagacctatcggctaccacctccttgtctcttcgccggcccccagggccc
atctcccagtccctgtgggggaatccaacacagtaccctttctggccaggtggaatggat
gagcccaccataatagatctgagcactcgggaggaggctgaggaggagatagactttgag
caagatcttcttactgttccacctggcttcaagaaaggtgtggactttgcaccaaaggat
cacccagctccagctcccagcttgctgagcctcagccgtttgttggagcctctggatttg
ggtgggggagatgaggatgagagtgaggcagtgggacagccaggaattcccagaggggac
actgtctctacctccccttgcagtgcttccctggcccgagcaagcagcttggaggaccta
gtgttgaaggaagcatccacagctgtatcccctccagaaccccccaaacccctgcctcag
gagcagtgggcgattcctgtggatgtcacctcccctgttggtgatttctaccgcctcatt
ccccagctggccttccagtgggcatttgagccagatgtgttccagaagcaggccatcctg
cacttggagcggcacgactctgtcttcgttgcggctcatacatctgcggggaagacggtt
gtggctgaatacgccattgcccttgcccagaaacacatgacgcgcaccatttacacgtcg
cccatcaaggccctgagcaaccagaagttccgagactttcgaaacacattcggggatgtg
ggattgctcactggggatgtacagctgcacccagaggcctcctgtctcattatgaccaca
gagatccttcgctccatgctgtacagcggctcagatgtcatccgggacctggagtgggtc
atctttgatgaggttcactacatcaatgatgctgagcgtggggttgtgtgggaggaggtg
ctcatcatgctccctgaccacgtctccatcatccttctgagtgctaccgtccccaacgcc
ctcgagttcgccgactggatcgggcgactcaaacgtcgccagatctatgtgatcagcact
gttgcgcgccccgttcccttggagcattatctcttcacggggaacagccccaagacccag
ggggagctctttctgttgctggactcccgaggcaccttccacacaaaggggtactatgca
gctgtggaggccaagaaggagcggatgagcaaacatgcccagacctttggggccaaacag
cccacgcatcagggggggcctgcacaggatcgcggtgtgtacctatccctcctggcctcc
ctccgcacccgtgcacagctgcccgtggtggtgttcaccttctcccggggtcgctgtgat
gagcaagcctcgggcctcacctcccttgacctcaccacaagttcagagaagagtgagatt
cacctcttcctacagcgctgccttgctcgcctccgtggctctgaccgccagctgccccag
gtcctacacatgtccgagcttctgcaccgtggcctgggtgtgcaccacagtggcatcctg
cctattcttaaagagatcgtggagatgctcttcagtcgaggcctggtcaaggtcttgttt
gccacagagacctttgccatgggtgtaaacatgcctgcccgaacggtggtgtttgactcc
atgcggaagcacgatggctccaccttccgggacctgctccctggagagtacgtgcagatg
gcaggccgggcaggccggaggggcctggactccacaggcactgtcatcctgctctgcaag
ggccgtgtgcctgagatggcagacctgcaccgcatgatgatggggaagccgtcacagctg
cagtcccagttccgactcacgtacaccatgatcctgaacctgctgcgggtggatgccctt
agggtggaggacatgatgaagaggagcttctccgagtttccatcccgcaaggacagtaag
gcccatgaacaggctttagttgaactgaccaagagactgggggccttggaggaacctgac
acgactggccaactggttgacctgcctgagtattacagctggggggaggaactgacagag
acccggagcctgatccagcgacgcatcatggagtctgtgaatgggctcaagtctctctca
gcgggaagggtagtggttgtgaagaatcaggagtatcacaacacattgggtgtgatcctg
caggtctcctcaaactccaccaacagagtatttaccaccctagtcttgtgtgataagcct
gtgtgtgaggacccacaggagagggcaccagccaccccagatgtgccctaccccgatgat
cttgtgggattcaagctgttcctgcctgaagggccctgtgaccacacagtggccaagctc
cagccaggagatgtggccgccatcaccaccaaggtgctccgggtgaatggggagaagatc
ttggaggacttcagcaagaggctgcaaccaaaattcaagaaggatcctcccattgcagcc
gtgaccactgctgtgcaggaactgctgcgtctggctcaggcctatccagcgggaccccct
acccttgaccctgtcaatgacctgcagctcaaggatgtgtcagtggtagagggggggctc
cgggcccataagctggaggagctgatctggggggctcagtgtgtgcacagcccccgcttc
tctgcccagtacctgaaactgcaggagcgaatgcagatacagaaagagatggagcgacta
cacttcctgctgtcggatcagtcactgctgctgctcccagagtaccaccagcgagcagag
gtgctccgaactctgggttatgtagacgaggcaggcactgtgaagctggcggggcgggtg
gcttgtgccatgagcagccatgagctcctcctcactgagctcatgttcgacaacgctctg
agtgccctgcggccagaggagattgcggccctactctccggcctggtctgccagagccct
ggggaccctggggagcagctcccaagcaccctcaaacagggagtggaacgtgtccgggct
gtggccaagcggattggtgaggtccaggtggcctgtggcctgaaccagacagtggaggaa
tttgtgggggagctgaattttgggctggttgaggttgtgtacgagtgggcccggggcatg
cccttctctgaactggcagggctgtcagggacccctgagggcctggtggtccgctgcatc
cagcgcctggccgagatgtgtcgctcgctgaggggggcagcccgcctcgtaggcgagcct
gtgctaggtgccaagatggagacggcagctaccttgctacggagggacatcgtctttgcg
gccagcctgtacactcagtga
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integrated database retrieval system
