Neomonachus schauinslandi (Hawaiian monk seal): 110587922
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Entry
110587922 CDS
T08474
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
nsu
Neomonachus schauinslandi (Hawaiian monk seal)
Pathway
nsu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nsu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110587922 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsu03019
]
110587922 (PARN)
Enzymes [BR:
nsu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
110587922 (PARN)
Messenger RNA biogenesis [BR:
nsu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110587922 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
RRM_1
NCBP3
T6PP_C
Motif
Other DBs
NCBI-GeneID:
110587922
NCBI-ProteinID:
XP_021553832
UniProt:
A0A2Y9HQF9
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Position
5:complement(148764057..148924633)
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AA seq
638 aa
AA seq
DB search
MEIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKH
SMDFLLFQFGLCTFKYDHTDSKYITKSFNFYVFPKPFNRSSPDVKFVCQSSSIDFLASQG
FDFNKVFRNGIPYLNQEEERQLREHYDEKRLQSNGAGTLSYVSPNTSKCPVTIPEDQKKF
IDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVDTLETEKKERYIV
ISKVDEEERKRREQQKLAKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQF
CCPLPVDLNEFKEMTTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKV
ESAEGFPSYDTATEQLHEAGYDAYITGLCFISMANYLGSFLSPPKIHVSARSKLVEPFFN
KLFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWIDDTS
AFVSLSQPEQVQIAVNTSKYAESYRIQTYAEYVGKKHKEKQIKRKWTEDTWQEVERKRLN
TQCISYALQNHYYHTNSLTVTSAAGKRNLSPSPAEADLEARISGDISDPELEQTESCAEP
LSEGRKKAKKLKRMKKDLSPAGGIPDSPAKLFEVPDTW
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atggagataatcaggagcaattttaagagtaatcttcacaaagtgtaccaggccatagag
gaggccgacttcttcgccatcgatggggagttttcaggaatcagtgatggaccttcagtc
actgcattgacaaatggttttgacactccagaagaaaggtatcagaagcttaaaaagcat
tccatggactttttgctgtttcagtttggcctttgcacttttaagtatgaccacacagat
tcaaagtatataacaaagtcatttaacttctatgtgttcccgaaacccttcaatagatcc
tcaccagatgtcaagtttgtttgtcagagctcaagcattgactttctagcaagccaagga
tttgattttaataaagttttccgcaatggaatcccatatttaaatcaggaagaagaaaga
caattaagagagcattatgatgaaaaacgtctgcagtccaatggcgcaggaactctgtct
tatgtatcaccaaacacttccaaatgtcctgtgacaattcctgaggaccagaagaagttt
attgaccaagtggtagagaaaatagaagatttattacaaagtgaagaaaacaagaacttg
gatttagagccatgtactgggttccaaagaaaactaatttatcagactttgagctggaag
tatcccaaaggcattcacgttgacactttagaaactgaaaagaaagagcgctacatcgtc
atcagcaaagtagatgaagaagagcgtaagaggagggagcagcagaaacttgctaaggaa
caggaagaactgaatgatgctgtgggattttctagagtcattcatgccattgccaattcg
ggaaaactcgttattggacacaacatgctcttggatgtcatgcacactgttcatcagttc
tgctgccctctgcctgtggacctaaatgagtttaaggagatgacgacatgtgttttcccc
agactcttggatacaaaattgatggccagcacacaaccttttaaggatatcattaacaac
acatcccttgcagaattggaaaagcggttaaaagagacgcctttcaaccctcctaaagtt
gaaagtgcagaaggctttccaagttatgacacggctactgaacagctccacgaggcgggc
tatgatgcttatatcacagggctgtgcttcatctccatggcgaactacctaggttctttt
cttagccctccaaaaattcatgtgtctgccagatcaaaactcgttgaacctttttttaac
aagttatttcttatgagagtcatggatatcccctatctaaacttggaaggaccagacttg
caaccaaaacgcgatcatgttctccatgtgactttccccaaagagtggaaaaccagcgac
ctttaccagctttttagtgcctttggtaacattcagatatcctggattgatgacacatca
gcatttgtttctctcagccagcccgaacaagtgcagattgctgtcaataccagcaaatat
gcagaaagctatcggatccagacctatgccgaatatgtggggaaaaaacacaaggagaag
cagatcaagagaaagtggacagaagatacttggcaggaggttgagagaaaacggttaaac
actcagtgcatatcctatgctctgcagaatcactactaccacaccaatagtcttacagtg
accagtgcggcaggaaagagaaacctgagtcccagcccagcagaagctgacttggaggcc
agaatatcgggggatatttctgaccctgagctcgaacagacggagtcctgtgcagaaccc
ctctccgagggaaggaaaaaggccaagaaattaaaaagaatgaagaaggacctttcacca
gcaggaggcatccctgacagccctgccaagctcttcgaggtgcccgacacgtggtaa
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