Neomonachus schauinslandi (Hawaiian monk seal): 110588510
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Entry
110588510 CDS
T08474
Name
(RefSeq) LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX60
KO
K20103
ATP-dependent RNA helicase DDX60 [EC:
5.6.2.7
]
Organism
nsu
Neomonachus schauinslandi (Hawaiian monk seal)
Brite
KEGG Orthology (KO) [BR:
nsu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsu03019
]
110588510
Enzymes [BR:
nsu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110588510
Messenger RNA biogenesis [BR:
nsu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
110588510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PIN-like_DDX60
DEAD
ResIII
Helicase_C
Abhydrolase_11
Motif
Other DBs
NCBI-GeneID:
110588510
NCBI-ProteinID:
XP_021554529
UniProt:
A0A2Y9HXD3
LinkDB
All DBs
Position
2:60012326..60116012
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AA seq
1711 aa
AA seq
DB search
MDLEEHVMVLERMSQLILSAVPKAEYSSLFNDFVESEFFLIDGDSLLATCICEKSLKPGQ
QLHFFYLVECYLMDLISKGGQFAIVFFKDAEYAYFNFPELLPLRTALILHLQHNTSIDVR
TKFSGCLSQEWEIFLEDSYPYYLIVANEGLNHLQTYLFNFLITQSWAMKVNIVLSSGQTS
DILXLYAYLMPSMYKNQQFFKENKKKIESAYKTLIKQLEECRISALESLFGNLKWKNMME
EACETISQLKQLWPGGSDIRRVLCVTSCSLSLRMYHHFLENRKKTTSIEKTNIQEGESNC
LALQEMEDLCKLHCLSVVFLLHLPLSQRACTRFITSHWTKNIHTFLEMKKWCEYFILSNI
NICEFWNLNLIHVSDLSDELLLKNIAFYYENENVEGLHLNLGHVIMKDYEHLWNTVSKSV
RKFAVGKPFPLRTTKLSFLEKNPSPIKDTAKENIPNLRFISMSCEVVDKFVGDLLTDLPF
LKSDDPIVTSLVKQKEFDELVHWHSHRPLSDDYDRTKCQFDEKSRDPHCLRSVQKYHVFQ
RFYGKSLESVSPKVVVTQAVKPKNKFIAPKNKKAHETKAEIITRENKKRLFAKEEEKEEK
KWSVLSFSIEEEMKENLNSGIKNLEEFLKSCKSNSVKFRVEMVALTACLKAWKEHCRGKE
GETTKDLNIAVQMMKRIHSLMEKYPELLQEADQQLIARCLKYLGFDELASSLYPTQVARD
DMKKTDKYSIGIGPVRFQLQYMGHYLIRDERKDPDPRVQDFIPDTWQRELLDVVDNNESA
VIVAPTSSGKTYASYYCMEKVLKESSEGVVVYVAPTKALVNQVAATVQNRFTKSLPNGEA
LCGVFTRDYRHDALNCQVLITVPACFEILLLAPHRQTWVKRIRYVIFDEVHCLGGEIGAE
VWEHLLVMIRCPFLALSATISNPQHLTEWLQSVKHYWKQEDHTMGKNIAFKRDAGCCANS
PKDYFRIKESYKVRLVLYGERYNDLEKHICSIKHNDIYFDHFHPCAALTTDHIEKYGFPS
DLTLSPRETIQLYDTMFQFWESWPRAQEFDPEKFIHFKNKIVIKKLDARKYEESLKAELT
SWIKNGHAEEAKVVLRNLSPDSVFSSENMKRMFPLLVEKLRKMEKLPALFFLFNLRDVEQ
TAICVRSFLEQKQKRQRLPKADKEAYDMTNKLGKVKKSIEKQKTIDEKSQKNPRKMDQIL
IHEAEHNNLLKTLEKNLEIPQECTYANQKAIDTETLQMVFDRVKFTRKGAELKALARRGI
GYHHSSLNSKEKQLVEILFRKGFIRVVTATGTLALGINMPCKSVVFAQNSIYLDALNYRQ
MSGRAGRRGQDLLGDVYFFDIPLPKIEKLIKSNVPELRGQFPLGITLVLRLMLLASKGDD
PEDAKAKVLSVLKHSLLSFKKPRVMKMLKLYFLFSLQFLVKQGYLDQEGKPMGFAGLVSH
LHYHEPSNLVFVSFLVKGLFHNLCQPTREGSKHFSQDVMEKLLLVLANLFGRRPLPAKFQ
EATVKFYQSKVFLDDLPKDFNDALREYNMDVTKDFASFLLNVAKLADMKQEYQLPLSKIN
STGKECEGSELVSHLMNCKEGRAAISPFVCLSGNSDGDLLLPNTPNHVVLRTIGINHTQA
PVLWSEILDDQGRRMPLNAYALDFYKHGSLTGLVQDNGINEGAAYYLLKDFALTIRSISV
SLRELCENEDDNVVLAFEQLSNTFFEKLNGV
NT seq
5136 nt
NT seq
+upstream
nt +downstream
nt
atggatttagaagaacacgtgatggttttagagagaatgtcacagctgattttgagtgca
gtgccaaaagctgaatattccagtttattcaatgattttgttgaatctgaattttttctg
attgatggagattcattacttgctacatgcatatgtgagaaatcattaaagccagggcag
cagctccacttcttctatctggttgaatgctatcttatggatcttatcagtaaaggagga
caatttgccatagttttcttcaaggatgctgagtatgcatatttcaacttccctgaactt
cttcctttgagaactgctttaattcttcatcttcagcataataccagcattgatgttcga
acaaaattttctggatgcctgtcacaggagtgggagattttcttggaagacagttaccca
tattacctgatagttgccaatgaaggcctgaaccatctacaaacataccttttcaacttt
ttaattactcagtcttgggcaatgaaggtcaacattgtgctttcctcagggcaaacatct
gatattctttgactttatgcataccttatgccaagcatgtataaaaaccaacaatttttc
aaagagaataaaaagaagattgagagtgcttataaaaccctgattaaacaattggaagaa
tgtagaatttcagcactagaatctctttttggaaatttaaaatggaagaatatgatggaa
gaggcatgtgaaactatttctcagcttaagcaactctggccaggaggatctgacattcgg
cgtgttctttgtgttacttcatgctcattgtctttgagaatgtaccatcactttttagaa
aatagaaagaagactacctctattgagaaaactaacatccaagagggggaaagtaattgc
ttagccctgcaagagatggaagatttatgtaaactgcattgtctcagtgtggttttccta
ctccacttacctctttctcaaagagcctgcactagattcatcacttcccactggactaag
aacattcacactttcttagaaatgaaaaagtggtgtgaatatttcatcctcagtaatata
aacatttgtgagttttggaatctgaatttaattcacgtttcggacttaagtgatgaactt
ttgttgaagaatattgctttttactatgaaaatgaaaatgttgaaggcctacatttgaat
ttgggacatgtcattatgaaagattatgaacatctctggaatactgtgtcaaagtcggtc
agaaagtttgctgttggaaagccatttcctctgagaacaacaaaactttcttttcttgaa
aagaatccatcaccaatcaaagataccgccaaggaaaacattcctaatttgagatttatt
tcaatgtcatgtgaagtggttgataagtttgttggtgaccttttgacagatttgcctttc
ttaaagagtgatgatcctattgtaacttcactagttaaacaaaaggaatttgatgaactt
gtgcattggcattctcacagaccccttagtgatgattatgacaggacgaagtgtcaattt
gatgaaaaatctagagatcctcattgtcttaggtctgtgcagaagtatcatgtttttcaa
cgattttatgggaaatcattagaatcagtctctccaaaagttgttgtgactcaagctgtc
aagccaaagaataagttcattgcacccaagaacaaaaaggcacatgagaccaaggctgaa
ataattactagagagaataaaaagaggttatttgctaaggaagaagagaaagaggagaaa
aaatggagtgttctgtcattttctattgaggaggaaatgaaagaaaacttaaactctgga
ataaagaacctggaagagtttttgaaatcatgtaaaagtaactcagtgaaatttcgagtt
gaaatggtagccttaactgcctgcttgaaagcatggaaagaacattgcagaggtaaagaa
ggtgaaaccacaaaagatttaaatatagctgttcaaatgatgaaaaggatccattccttg
atggaaaaatacccagaacttttgcaggaggcagatcagcaactcatagccagatgcctg
aagtacttaggatttgatgaattggcaagttctttatatccaacccaggttgcaagagat
gacatgaagaaaacagataaatactcaattggcattgggccagttcggtttcaactacaa
tacatgggccattatttgatacgagatgagagaaaagatccagatcccagggttcaggat
tttattcctgacacatggcagcgagagctccttgatgttgtggataataatgagtcagca
gtgattgtcgccccaacgtcctcaggcaaaacctatgcttcctactattgcatggagaag
gtgctgaaggagagcagtgaaggggtggttgtgtatgttgcaccaacaaaggcccttgtt
aatcaagtggcagcaactgttcagaaccgttttaccaaaagtctgccaaatggtgaagct
ctatgtggtgtttttacaagggactatcgtcacgatgccctaaactgtcaggtacttatt
acagtgcctgcctgctttgaaattctgctattagctcctcatcgccaaacatgggtgaaa
aggatcagatatgttatatttgatgaggtccattgtcttggcggagaaattggagcagaa
gtctgggagcatctccttgtcatgatccgatgtccctttttggctctttcagctaccata
agtaaccctcagcatctcactgagtggctacaatcagtaaaacactactggaaacaagaa
gaccatacaatgggaaaaaatattgcttttaaaagagatgctggctgttgtgccaattct
cccaaagattacttccgaataaaggaatcgtataaagttagacttgtgctctatggagag
agatacaatgatttagagaagcatatatgttcgataaaacataatgacatctattttgat
cattttcacccatgtgccgcactaacaacagatcatattgaaaagtatggatttccttct
gatcttaccctttcccctcgagaaaccatccagctttatgataccatgtttcagttctgg
gaaagctggcccagggcccaggagttcgatccagagaaattcattcattttaagaataaa
atagtcattaaaaagttggatgctagaaaatatgaagagagcttaaaggcagaactaaca
agttggatcaaaaatggccatgccgaggaggccaaagtggttctgaggaatcttagtcct
gattcagtttttagttcagaaaacatgaaaagaatgtttccacttctcgttgaaaaacta
aggaaaatggaaaagttaccggcattattttttttattcaacttaagagatgtagaacaa
acagctatatgtgtgagaagtttcctggagcaaaagcaaaagagacaaagacttcctaaa
gctgataaagaagcctatgacatgactaacaaacttggaaaagttaaaaaatccattgag
aaacaaaagacaatagatgaaaaaagccagaaaaatcccagaaaaatggatcaaatccta
atacatgaagctgaacataataatctactcaagactttagagaagaacctggaaatccct
caggagtgcacatatgctaatcaaaaagctatagacactgagactttgcagatggtgttt
gatcgagtaaaattcacaagaaagggtgcagagctgaaggctttggcaagaaggggtatt
ggatatcatcacagctctttaaactccaaagaaaagcagttagttgagattctttttagg
aaaggttttattagggtggtgacagctactgggacacttgctttaggaatcaacatgcct
tgtaaatctgtggtttttgctcaaaactcaatctatctggatgctttaaattacagacag
atgtctggacgtgctggaagacgaggtcaagacctgctgggagatgtatatttctttgat
attccattgcccaaaatagaaaaactcattaaatccaatgttcctgaactgagaggacaa
ttccctctcggcattaccctggtcctgcgactcatgctgctggcttccaaaggagatgac
ccagaggatgctaaagcaaaggtgctgtcagtgctaaagcattcattgctgtccttcaaa
aaacccagagtcatgaagatgttaaaactttatttcttgttttctttgcaattccttgtg
aaacagggctatttagatcaagaaggtaaaccaatggggtttgctggacttgtatcacat
ctgcattatcatgagccttctaatcttgtttttgtcagttttcttgtaaaaggccttttc
cataatctctgtcagccaactagggaaggctcaaaacatttttctcaagatgttatggaa
aagctattgttagtcttggcaaatctgttcggaagaagacctcttccagcaaagttccag
gaggctactgtcaagttttatcaatcaaaggtgttccttgacgatctccctaaggatttt
aatgatgctttacgtgagtataacatggacgttacaaaggactttgcctccttcctacta
aatgttgccaaattggctgatatgaaacaggaatatcaactcccattgtcaaaaataaat
tccacaggaaaagaatgtgagggctctgaactggtttctcatttgatgaactgcaaagaa
ggaagagcagctatttctccatttgtttgtctctccggaaactctgatggtgatttgctt
ctaccaaatactccgaaccatgtcgttctacgcacaattggtatcaatcacactcaggct
cctgtgctgtggtcagagatattggatgaccaaggaagaagaatgccacttaatgcttat
gcacttgatttctataaacatggttccttgacaggactagtccaggacaacgggataaat
gaaggagctgcttattacttgttgaaagattttgcactcaccattagatctatcagtgtt
tccttgcgtgaactatgtgaaaatgaagacgacaacgtggtcttagcatttgaacaattg
agtaacaccttttttgaaaaacttaatggagtttaa
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