Neomonachus schauinslandi (Hawaiian monk seal): 110591895
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Entry
110591895 CDS
T08474
Symbol
COL3A1
Name
(RefSeq) collagen alpha-1(III) chain
KO
K19720
collagen type III alpha
Organism
nsu
Neomonachus schauinslandi (Hawaiian monk seal)
Pathway
nsu04611
Platelet activation
nsu04820
Cytoskeleton in muscle cells
nsu04926
Relaxin signaling pathway
nsu04933
AGE-RAGE signaling pathway in diabetic complications
nsu04974
Protein digestion and absorption
nsu05146
Amoebiasis
nsu05415
Diabetic cardiomyopathy
Brite
KEGG Orthology (KO) [BR:
nsu00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
110591895 (COL3A1)
09150 Organismal Systems
09151 Immune system
04611 Platelet activation
110591895 (COL3A1)
09152 Endocrine system
04926 Relaxin signaling pathway
110591895 (COL3A1)
09154 Digestive system
04974 Protein digestion and absorption
110591895 (COL3A1)
09160 Human Diseases
09174 Infectious disease: parasitic
05146 Amoebiasis
110591895 (COL3A1)
09166 Cardiovascular disease
05415 Diabetic cardiomyopathy
110591895 (COL3A1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
110591895 (COL3A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
nsu00536
]
110591895 (COL3A1)
Glycosaminoglycan binding proteins [BR:
nsu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
110591895 (COL3A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
110591895
NCBI-ProteinID:
XP_021558546
UniProt:
A0A2Y9I468
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Position
3:148210682..148249697
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AA seq
1464 aa
AA seq
DB search
MMSFVQKGAWLLLALLHPTVILAQQQAVDGGCSHLGQSYADRDVWKPEPCQICVCDSGSV
LCDDIICDEQELDCPNPEIPFGECCAVCPQPPTAPPRPPNGHGPQGPKGDPGPPGIPGRN
GDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQFESYDVKAGIGGQITGYPGPPGPPGP
PGPPGPSGHSGSQGSPGYQGPPGEPGQPGPSGPPGPPGAIGPSGPAGKDGESGRPGRPGE
RGLPGPPGIKGPAGMPGFPGMKGHRGFDGRNGEKGDTGAPGLKGENGLPGENGAPGPMGP
RGAPGERGRPGLPGAAGARGNDGARGNDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGS
SGSPGQRGEPGPQGHAGAAGPPGPPGSNGSPGGKGEMGPAGIPGAPGLIGARGPPGPPGA
NGAPGQRGGAGEPGKNGAKGEPGPRGERGEAGSPGIPGPKGEDGKDGSPGEPGANGLPGA
AGERGVPGFRGAAGANGLPGEKGPSGERGGPGPAGPRGAPGEPGRDGVPGGPGMRGMPGS
PGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGG
PGPQGLAGKNGETGPQGPPGPTGPAGDKGDAGPPGPQGLPGLPGTNGPPGENGKPGEPGP
KGESGSPGTPGGKGDSGAPGERGPPGAVGPPGLRGGAGPPGPEGGKGAAGPPGPPGSAGT
PGLQGMPGERGGPGGLGPKGDKGEPGSAGADGAPGKDGPRGPTGPIGPPGPAGQPGDKGE
GGAPGLPGIAGPRGGPGERGEHGPPGPAGFPGAPGQNGEPGAKGERGAPGEKGEGGLPGI
AGPPGGAGPAGPPGPQGVKGERGSPGGPGSAGFPGARGLPGPPGNNGNPGPPGPSGAPGK
DGATGPPGNNGAPGNPGASGPKGDAGQPGEKGSPGSQGPPGPPGPLGMAGITGARGLAGP
PGIPGPRGSPGPQGVKGESGKPGAAGHNGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGL
PGRDGAPGGKGDRGENGSPGAPGAIGHPGPPGPIGPAGKSGDRGETGPAGPSGAPGPAGS
RGPPGPQGPRGDKGETGERGSSGIKGHRGFPGNPGAPGPPGPSGHQGAVGSPGPAGPRGP
VGPGGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPGLCCGGGA
IIGSPGGAEKAGGFAPYYGDEPMDFKINTEEIMTSLKWVNGQLESLISPDGSRKHPARNC
RDLKFCHPELKSGEYWVDPNQGCKLDAIEVFCNMETGETCINASPWTVPRKNWWTDSSAE
KKHVWFGESMDGGFQFSYGNPELPEDVLDVQLAFLRLLSSRASQNITYHCKNSIAYMDHA
SGNVKKALRLMGSNEGEFKAEGNSKFTYTVLDDGCTKHTGEWGKTVFEYRTRKAVRLPIV
DIAPYDIGGPDQEFGVDIGPVCFL
NT seq
4395 nt
NT seq
+upstream
nt +downstream
nt
atgatgagctttgtgcaaaagggggcctggttacttcttgctctgcttcatcccactgtt
attttggcacaacagcaagctgttgacggaggatgctcccatcttggtcagtcctatgcg
gatagagatgtctggaagccagaaccttgccaaatatgtgtctgtgactcaggatctgtt
ctctgtgatgacataatatgtgacgaacaagaattggactgtcccaacccagaaatccca
tttggagaatgttgtgcagtgtgcccccagcctccaacagctcctcctcgccctcctaat
ggtcatggacctcaaggtcctaagggagatccaggcccacctggtattcctgggagaaat
ggtgatcctggtattccaggacaaccaggttcccctgggtctcctggcccccctggaatc
tgtgaatcatgccctactggtcctcagaactattctccccagtttgagtcatatgacgtc
aaggctggaataggaggacaaatcacaggctatcctgggccacctggtccccctggccct
cctggtccccctggtccatctggtcattctggctcccagggttctccaggataccaaggt
ccccctggtgaacctgggcaacctggaccatcaggccctccaggaccccctggtgctata
ggtccatctggtcctgctggaaaagatggagaatcaggaagacccggacgacctggagag
cgagggttgcctggacctccaggtataaaaggtccagctggtatgcctggattccctggt
atgaaaggacatagaggctttgatggacgaaatggagaaaagggtgatacaggtgctcct
ggattaaagggtgaaaatggcctcccaggtgaaaatggagcccctggacccatgggtccc
agaggagctcctggtgagagaggacggccaggactgccaggagctgcgggggctcgaggt
aatgatggtgctcgcggaaatgatggacaaccaggtcctcctggtccccctggaactgca
ggattccctggttctcctggtgctaagggtgaagttggacctgccggctctcctggttca
agcggctcccccggacaaagaggagaacctggacctcagggccatgctggtgctgcaggt
cctcctggccctcctgggagcaatggtagtcctggtgggaaaggtgaaatgggtcctgct
ggcattcctggagctcctggactgataggagcccggggtcctcctggaccacctggtgcc
aatggtgctcctggacagcgaggtggtgcgggcgaacctggtaaaaatggtgccaaagga
gagccagggccacgcggtgaacgtggggaagctggttctccaggtattccaggacctaaa
ggtgaagatggcaaagatggttcgcctggagaacctggtgcaaacggacttccaggagct
gcaggagaaaggggtgtgcctggattccgaggggctgctggagccaacggccttccagga
gaaaagggtccctctggggagcgtggtggtcccggccccgcagggcccagaggagctcct
ggagaacctggccgagatggtgtccctggaggtccaggaatgaggggtatgcccggaagc
ccaggagggccaggcagcgatggaaaaccagggcctcccggaagtcaaggagaaagcggt
cgaccaggtcctccaggcccatctggtccccgaggtcagccgggtgtcatgggtttccct
ggtcctaaaggaaatgatggtgcacctggcaagaatggagaacgaggtggccctggaggt
cctggccctcagggtcttgctggaaagaatggtgaaactggacctcagggtcccccagga
cctactgggccagctggtgacaaaggagatgcaggaccccctggtccacaaggattgcca
ggtttgcctggaaccaatggacctccaggagaaaatggaaaacctggtgaaccaggtcca
aagggtgaatctggttcacctggaactccaggaggcaagggtgattcgggagccccgggc
gaacgaggacctcccggagccgtggggcccccgggactgagaggtggagccggcccccct
ggtcccgaaggaggaaagggcgctgctggaccccctgggccacctgggtctgctgggact
cctggtctgcaagggatgcctggggaaagaggaggtcctggaggcctcgggccaaagggt
gacaagggcgaaccaggcagcgcaggggcggatggtgctccagggaaagacgggccgcgg
ggtcctacgggtcccattggtccccctggcccagctggtcagcctggagataagggtgaa
ggtggtgcccctggacttccgggtatagctggtcctcgtggtggccctggtgagagaggc
gaacatgggcctccaggacctgctggcttccctggtgctcctggacagaatggtgagcct
ggtgctaaaggagaaagaggtgctcctggtgagaaaggtgaaggagggctccctggcatc
gcaggaccccctgggggtgctgggcctgctggtccccctggtccccagggcgtcaaaggt
gaacgcggcagtcctggtggtcctggttctgctggcttccctggtgctcgtggtcttcct
ggtcctcctggtaataatggtaacccaggccccccgggccccagcggtgctccaggcaag
gacggggccaccggtccacctggtaacaatggtgctcccggcaaccctggagcgtctgga
cctaaaggtgatgctggccaacccggcgagaagggatcccccggctcccagggccccccg
ggacctccaggcccactgggaatggccgggattaccggagccaggggtctcgcgggacca
ccgggcatcccgggtcctaggggaagcccaggcccacagggtgtcaagggtgaaagtggg
aaaccaggagctgctggtcacaatggagaacgtggtcctcctggaccccagggtcttcct
ggtctggctggtacagctggtgaacctggaagagacggaaacccaggatcggatggtctt
ccaggccgagatggagctcccggtggcaagggtgatcgtggagaaaatggttcccctggt
gcccccggtgctattggtcatccaggcccccctggtcccattggtccagctggaaagagt
ggtgacagaggagaaactggccccgctggcccttctggtgctccgggtcctgctggttcc
cgaggtcctcctggtccccaaggtccacgtggtgacaaaggtgaaacaggtgaacgtggt
tctagtggcatcaaaggacatcgaggattccctggtaatccaggtgccccaggtcctcca
ggtccttctggtcaccaaggtgccgttggtagcccaggacctgcaggcccgcgaggacct
gttggacccggtgggcccccaggcaaagatggcacgagcggacatccgggtcccattgga
ccgccagggcctcgagggaacagaggtgaaagagggtctgagggctccccaggccaccca
ggacaaccaggccctcctggacctcctggtgctcctggtctgtgctgtggtggtggggct
atcataggttctcccggaggggctgaaaaagctggtggttttgccccatattatggagat
gaaccgatggatttcaaaatcaacaccgaggagattatgacttcactcaaatgggtcaac
ggacaactagaaagcctcattagtcctgatgggtcccgtaaacaccctgctcggaactgc
cgagacctgaaattttgccatcctgagctcaagagcggagaatattgggttgatcctaac
caaggttgcaagttggacgctattgaagtattctgcaatatggaaactggggaaacgtgc
ataaatgccagtccttggactgttccacgtaagaactggtggacagattctagtgctgag
aagaaacatgtttggtttggagaatctatggatggtggttttcagtttagctatggcaat
cctgaacttcctgaagatgtcctcgatgtccagctggccttcctccgacttctctccagc
cgggcctcccagaacatcacgtaccactgcaagaatagcattgcatacatggatcatgcc
agtgggaatgtaaagaaagccttgaggctgatgggctcaaatgaaggtgaattcaaggct
gaaggaaatagcaaattcacatacacagtcctggacgatggttgcactaaacacactggg
gaatggggcaaaacagtcttcgaatatcgaacgcgcaaggccgtgagactacctattgta
gatattgcaccctatgatattggtggtcctgatcaagaatttggtgtggacattggccct
gtttgctttttataa
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