Neomonachus schauinslandi (Hawaiian monk seal): 110591918
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Entry
110591918 CDS
T08474
Symbol
PRPF40A
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
nsu
Neomonachus schauinslandi (Hawaiian monk seal)
Pathway
nsu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nsu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110591918 (PRPF40A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nsu03041
]
110591918 (PRPF40A)
Spliceosome [BR:
nsu03041
]
Complex A
U1 snRNP components
U1 related factors
110591918 (PRPF40A)
Complex B
110591918 (PRPF40A)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
110591918
NCBI-ProteinID:
XP_021558572
UniProt:
A0A2Y9I3P5
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Position
3:complement(116475516..116528740)
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AA seq
998 aa
AA seq
DB search
MQATPSEAEAGGESLQSCVSAAHSDWTVGKPVSLLAPLIPPRSAGQPLTFGPSGRQPLRS
LLVGMCSGSGRRRSSLSPTMRPGTGAERGGLMMGHPGMHYAPMGMHPMGQRANMPPVPHG
MMPQMMPPMGGPPMGQMPGMMSSVMPGMMMSHMSQASMQPALPPGVNNMDVAAGTTSGAK
SMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQ
TKESRWAKPKELEDLEGYQNTIVAGSLITKSNLHAMIKAEESSKQEECTTTSTAPVPTTE
IPTTMSTMAAAEAAAAVVAAAAAAAAAAAAANASASTSASNTVGGTGPVVPEPEVTSIVA
TVVDNENTVTISTEEQAQLTSTPAVQEQSMEVSSNTGEETAKQETVADFTPKKEEEESQP
TKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNA
YKVQTEKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERD
RLEIYEDVLFFLSKKEKEQAKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTF
AEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKSLLRERRRQRKNRESFQIFLDELHE
HGQLHSMSSWMELYPTISSDIRFTNMLGQPVFSLGSTALDLFKFYVEDLKARYHDEKKII
KDILKDKGFVVEVNTTFEDFVAIISSTKRSTTLDAGNIKLAFNSLLEKAEAREREREKEE
ARKMKRKESAFKSMLKQATPPIELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFMHV
LEHECQHHHSKNKKHSKKSKKHHRKRSRSRSGSDSDDDDSHSKKKRQRSESRSASEHSSS
AESERSYKKSKKHKKKSKKRRHKSDSPESDAEREKDKKEKDRENEKDRTRQRSESKHKSP
KKKTGKDSGNWDTSGSELSEGELEKRRRTLLEQLDDDQ
NT seq
2997 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcgacgccgagtgaggctgaagctgggggcgaatcgctgcagagctgcgtgtcg
gccgcgcactctgattggacagtggggaagcctgttagcttattggcccctctgatcccg
ccccgtagcgcagggcagcctttaacctttggccccagcgggcgtcagccactcagatcg
cttcttgttggtatgtgtagcggcagtggccgccggcggagcagtctgagcccgacgatg
aggccggggacgggagcggagcgtggaggcctcatgatggggcaccctggcatgcattat
gccccaatgggaatgcaccctatgggtcagagagcgaatatgcctcctgtacctcatgga
atgatgccgcaaatgatgccccctatgggagggccgccaatgggacaaatgcctggaatg
atgtcttcagtaatgcctggaatgatgatgtctcatatgtctcaggcttccatgcagcct
gccttaccgccaggagtaaataatatggatgtagcagcaggtacaacatctggtgcaaaa
tcaatgtggaccgagcataaatcacctgatggaaggacttactactacaatactgaaaca
aaacagtctacttgggagaaaccagatgatctgaaaacacctgccgagcaacttttatct
aaatgtccctggaaggaatacaaatctgactctggaaagccttactattataattctcaa
acaaaagaatcccgctgggccaaacctaaagaacttgaggatcttgaaggataccagaat
accattgttgctggaagtcttattacaaaatcaaacctgcatgcaatgatcaaagctgaa
gaaagcagtaagcaagaggagtgcaccacaacatcaacagccccggttcctacaacagaa
attccaaccaccatgagcaccatggctgctgcggaagccgctgccgccgtcgttgctgcc
gccgccgccgctgctgctgccgccgccgcagccaatgccagtgcttccacctctgcttca
aacactgtcggtggaactggcccagtcgttcctgagccagaagttacttcgattgttgct
actgttgtagataacgagaatacagtgacaatttcaactgaagaacaagcacaacttact
agtactcctgctgttcaggaacagagtatggaagtatcaagtaatactggagaagaaaca
gctaagcaggaaactgtagctgattttactcccaaaaaagaagaggaggaaagccaacca
acaaagaaaacctatacttggaatacaaaggaagaggcaaagcaagcatttaaagaatta
ttgaaagaaaagcgggtaccgtctaatgcttcatgggaacaagctatgaaaatgatcatt
aatgatccacgatacagtgctttagcaaagttgagtgaaaaaaagcaagcctttaatgct
tacaaagtccagacagagaaagaagaaaaagaagaggcaagatcgaaatacaaagaggct
aaggaatcctttcagcgttttcttgaaaatcatgagaaaatgacttccacaaccagatac
aaaaaagcagagcaaatgtttggagagatggaagtctggaatgcaatatcggaacgtgat
cgtcttgaaatctatgaagatgttttattctttctttcaaaaaaagaaaaggagcaagca
aagcagttacggaagagaaattgggaagccttaaaaaacatacttgacaacatggctaat
gtaacatactctactacctggtctgaagcccagcagtatctgatggataatccaactttt
gcagaagatgaggaattacagaacatggataaagaagatgcattaatttgctttgaagaa
cacatccgagctttagaaaaagaagaagaagaagaaaaacagaagagtttgctgagagaa
aggagacgacagcgtaaaaatagagaatcttttcagatatttttagatgaactgcacgaa
catggacaactgcattctatgtcatcttggatggaattgtatccaacaattagttccgac
attagatttactaacatgcttggtcaaccggttttttcattaggatcaactgcacttgac
cttttcaagttttatgttgaggatcttaaagcacgttatcatgatgagaagaaaataata
aaagacattctaaaggataaaggatttgtagttgaagtaaatacgactttcgaagacttt
gtggccataatcagttcaactaaaaggtcaaccacgttagatgctggaaatattaagttg
gctttcaacagtttattagaaaaggcagaagctcgtgaacgcgaacgagaaaaagaggag
gctcggaaaatgaaacgaaaagaatctgcatttaagagtatgttgaaacaggctactcct
ccaatagaattggatgctgtctgggaagatatccgggagagatttgtaaaagagccagca
tttgaggacataactctagagtctgaaagaaaacgaatatttaaagattttatgcatgtg
cttgagcatgaatgtcaacatcatcattcaaagaacaagaaacattctaaaaaatctaaa
aaacatcacaggaaacgttcccgctctagatcgggatcagattcagatgatgacgacagc
cattcaaagaaaaaaagacagcgatcagagtctcggtctgcctcagaacattcttctagt
gctgagtctgagagaagttataagaagtcaaaaaaacataagaagaaaagcaagaagagg
agacataaatctgactctccagagtcagatgctgagcgagagaaggataaaaaagaaaaa
gaccgagaaaatgaaaaagacagaactagacaaagatcagaatcaaaacacaaatcacct
aagaaaaagactggaaaggattctgggaattgggatacttctggcagtgaactgagtgaa
ggggaattggaaaagcgcagaaggacccttttggagcaactggatgatgatcaataa
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