Neomonachus schauinslandi (Hawaiian monk seal): 110592786
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Entry
110592786 CDS
T08474
Symbol
LIG3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
nsu
Neomonachus schauinslandi (Hawaiian monk seal)
Pathway
nsu03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
nsu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
110592786 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nsu03400
]
110592786 (LIG3)
Enzymes [BR:
nsu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
110592786 (LIG3)
DNA repair and recombination proteins [BR:
nsu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
110592786 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
zf-PARP
DNA_ligase_A_C
RNA_ligase
Synaptonemal_3
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
110592786
NCBI-ProteinID:
XP_021559567
UniProt:
A0A2Y9I6E8
LinkDB
All DBs
Position
15:22331931..22352677
Genome browser
AA seq
1051 aa
AA seq
DB search
MTLTFKILFPPTLRTLGRKELCLFRQQHHWPDRRQFSHWSETDLLHGHCLLQRRKPALSF
QEGHLRPRATCLVFLPGAHVGLCSGPCEMAEQRFCVDYAKRGAAGCKKCKEKIVKGVCRI
GKVVPNPFSESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEELEDNEKEQISQ
HIADLSSKATGTPKKKAVVQAKLTATGQVASPVKGASLVTSSNPRKFSGFSAKPNNSGGA
HSSPPPKASLSSSRCDPKHKDCLFREFRKLCAMVAENPSYNTKTQIIQDFLRKGSAGDGF
HGDVYLTVKLLLPGVIKSVYNLNDKQIVKLFSRIFNCNPDDMARDLEQGDVSETIRVFFE
QSKSFPPAAKSLLTIQEVDEFLLRLSRLTKEDEQQQALQDIASRCTANDLKCIIRLIKHD
LKMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLRNEQEVEKEPGRRRALSVQASLMT
PVQPMLAEACKSIEHAMKKCPNGMFSEIKYDGERVQVHKKGDHFSYFSRSLKPVLPHKVA
HFKDYIPQAFAGGHSMILDSEVLLIDTKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIY
FNDVSLMDRPLCERRKFLHDNMVEIPNRIMFSEMKQVTKAADLADMINRVIREGLEGLVL
KDVKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPS
SQKWCTVTKCSGGHDDATLARLQKELDMVKISKDPSKIPGWLKVNKIYYPDFIVPDPKKA
AVWEITGAEFSKSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKERADFT
VAAREEGSSTTGGSSGENGGTSGPAGARKASRASPKQPSTGARKAGGRLSGPSSRGGQQL
TLKAGQKRKAPEETPCPAKTSAASDATSWHSTGTWCRSLTRPQPHTCWVVGTRTLRPSRS
PRSGFGHVSGNEGCWPPARTAALPWPGPRSLCPGCGGWATARTRWEGMAFLLQAMRLPEP
TSRAWSPPGQDLGDFGLWVPPGKSVAPAGSP
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
atgactttgactttcaagatcctcttcccaccaaccctccgcacacttgggcgaaaagaa
ctgtgcctattccgacagcaacatcactggcctgacagaagacagttcagccattggtca
gaaacagatctgcttcatgggcattgcctcctccagagaagaaagcctgctctgtcattc
caggaaggccatctaagaccacgtgccacctgccttgttttcttgccaggggcgcatgtg
ggactctgcagtggcccctgtgagatggccgagcaacgattctgtgtggactatgctaag
cgcggcgcggcgggctgcaaaaagtgcaaggaaaagattgtgaagggggtgtgccggatc
ggcaaagtggtgcccaaccccttttcagagtccgggggtgatatgaaagagtggtatcac
attaaatgcatgtttgagaaactggagcgggcccgggctaccacaaaaaaaatcgaggac
ctcacagagctagaaggctgggaagagctggaagacaatgagaaggaacagataagccag
cacattgcagatctgtcttctaaggcaacgggcacaccaaagaagaaagccgtcgtccag
gctaagctgacagccactggccaggtggcctctccagtgaaaggtgcctcacttgtcacc
agtagcaatccccggaaattttctggtttttcagccaagcccaacaactctgggggagcc
cactcaagccctccccctaaggcaagtctgtcctcaagcagatgtgaccccaagcacaag
gattgtctgtttcgcgagtttcggaagttgtgtgccatggtggctgagaatcctagctac
aacacgaagacccagatcatccaggactttcttcggaaaggttcagcaggagatggtttc
cacggcgacgtgtacctgacagtgaagttgctgctgccaggtgttattaagagtgtttac
aacttgaatgataagcagatcgtgaagcttttcagccgcattttcaactgcaacccagat
gatatggcacgagacctagagcagggcgacgtgtcagagacaatcagagtcttctttgag
cagagcaagtctttccccccagctgccaagagcctccttactatccaggaggtggacgaa
ttcctccttcggctctccaggctcaccaaggaggatgagcagcaacaggctctgcaggac
atcgcctccaggtgtacagccaatgacctcaagtgcatcatcaggttgatcaaacatgat
ctgaagatgaactcaggtgcaaagcacgtgttagatgcccttgaccccaatgcctatgaa
gccttcaaagcctcgcgcaacctgcaggacgtggtggagcgggtcctccgcaatgagcag
gaggtggagaaggagccaggccggagacgagctctgagcgtccaggcttccctgatgacg
ccagtgcagcccatgctggccgaggcctgcaagtccattgagcacgcaatgaagaagtgt
cctaacggcatgttctctgagatcaagtacgatggggagcgagtgcaggtgcataagaag
ggggaccacttcagctacttcagccgcagcctcaagcctgtcctgcctcacaaggtggcc
cacttcaaggactacatcccccaggctttcgccgggggccacagcatgatcttggactct
gaggtgctcctgattgacacgaagacaggcaaaccgctgccctttgggactctgggagtg
cacaagaaagctgccttccaggatgctaatgtttgcctatttgtttttgattgtatctac
ttcaatgatgtcagcttgatggacaggcctttgtgtgagcggcggaagtttcttcatgat
aacatggttgaaattcccaaccggatcatgttctcagaaatgaagcaagtcactaaagct
gcggacttggccgacatgataaaccgggtcatccgagaggggctggaagggctggtgctg
aaggacgtgaagggtacatatgagcctggaaagcggcactggctgaaggtgaaaaaagac
tatttgaatgagggggccatggcggacacagctgacctggtggtccttggggccttttat
gggcaagggagcaaaggtggcatgatgtccatcttcctcatgggctgctatgacccaagc
agccagaagtggtgcacggtcaccaagtgttcgggaggccacgatgatgcgacccttgcc
cgcctgcagaaggaactggacatggtgaagatcagcaaggatcccagcaagatacccggc
tggctgaaagtcaacaagatctactatcctgacttcatagtcccagacccaaagaaagct
gccgtgtgggagatcacgggggccgagttctccaagtctgaggcgcacacggccgacggg
atctccatccgcttcccacgttgcacccgcatccgtgatgataaggactggaagtctgcc
actaacctcccccagctcaaggaactgtaccagctgtccaaggagagggctgacttcacc
gtggcggcccgagaggaggggagctccaccaccgggggcagcagcggagagaacgggggt
acctcggggcctgcgggggctcgcaaggcctccagggcctccccgaagcagccctccacc
ggcgccaggaaggcaggagggaggctgagtggccccagcagcagaggcggccagcagctg
accttgaaggcaggccagaagcggaaggcccccgaggagacgccgtgcccagccaagact
tcagccgcctcagacgctacttcgtggcattcgacggggacctggtgcaggagtttgaca
cggcctcagccacacacgtgctgggtagtggggacaagaaccctgaggcccagcaggtct
ccccggagtggatttgggcatgtatccggaaacgaaggctgctggccccctgctaggacc
gcggccctcccttggcctgggccgcgctcactgtgccccggctgcggcgggtgggcgacg
gcgaggacacggtgggaggggatggcctttcttctccaagcaatgcgtcttccagaaccc
accagccgtgcttggtctcctcccggccaggaccttggggacttcgggctgtgggtgcca
ccagggaagtccgtggctcctgctggttcaccgtag
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