Neomonachus schauinslandi (Hawaiian monk seal): 110593502
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Entry
110593502 CDS
T08474
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
nsu
Neomonachus schauinslandi (Hawaiian monk seal)
Pathway
nsu04151
PI3K-Akt signaling pathway
nsu04510
Focal adhesion
nsu04512
ECM-receptor interaction
nsu04974
Protein digestion and absorption
nsu05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
nsu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
110593502 (COL2A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
110593502 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
110593502 (COL2A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
110593502 (COL2A1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
110593502 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
nsu00536
]
110593502 (COL2A1)
Glycosaminoglycan binding proteins [BR:
nsu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
110593502 (COL2A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
110593502
NCBI-ProteinID:
XP_021560439
UniProt:
A0A2Y9IDI4
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Position
5:64997029..65027689
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AA seq
1487 aa
AA seq
DB search
MIRFGAPQTLVLLTLLVAAVLRCHGQDVQKAGSCVQDGQRYNDKDVWKPEPCRICVCDTG
TVLCDDIICEDMKDCLSPETPFGECCPICSTDLATASGQPGPKGQKGEPGDIKDIVGPKG
PPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFA
AQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMG
PRGPPGPPGKPGDDGEAGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKG
EAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVG
PAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKG
SAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQG
APGPAGEEGKRGARGEPGGAGPVGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAG
PKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPG
VMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPG
PSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRG
LPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPG
KDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGTAGARGAPGERGETGPPGPAGFAGPPG
ADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPG
AAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGDPGLQGPAGPPGEKGEPG
EDGPSGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPG
PVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGAPGSPGPAG
PTGKQGDRGEAGAQGPMGPAGPAGARGIPGPQGPRGDKGEAGEAGERGLKGHRGFTGLQG
LPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAG
PPGNPGPPGPPGPPGPGIDMSAFAGLGQREKGPDPLQYMRADQAASDLRQHDAEVDATLK
SLNNQIESLRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETG
ETCVYPNPANVPKKNWWSSKSKDKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRL
LSTEGSQNITYHCKDSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTVLKDGCTK
HTGKWGKTLIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCFL
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgatccgcttcggggctccccagacgctggtgctgctgacgctgctcgtcgccgctgtc
cttcgatgtcacggccaggatgtccagaaggccggcagctgtgtgcaggacgggcagagg
tataatgataaggatgtgtggaagcccgagccctgccggatctgtgtctgtgacactggg
accgtgctctgtgacgacataatctgtgaagacatgaaagactgcctcagccccgagacc
cccttcggagagtgctgccccatctgctcaactgacctcgccacggccagtgggcaacca
ggaccaaaggggcagaaaggagaacctggagacatcaaggatattgtaggacctaaagga
cctcctgggcctcagggaccagcaggtgaacaaggacccagaggtgatcgtggtgacaaa
ggtgaaaaaggtgcccctggacctcgtggcagagatggagagcctgggacccctggaaat
cctggcccccctggtcctcctggcccccctggtccccctggccttggtggaaactttgct
gcccagatggctggaggatttgacgagaaggctggtggcgcccagatgggagtgatgcaa
gggccgatgggcccaatgggacctcgaggacctccaggccctgctggtgctcccggacct
caaggatttcagggcaaccctggtgaacctggagaacccggtgtctccggtcccatgggt
ccccgtggtcctcctggcccccctggaaaacctggtgatgatggcgaagctggaaagcct
ggaaaatctggtgaaagaggcccccccggccctcagggtgctcgaggcttcccgggaacc
ccaggccttcctggtgtcaagggtcacagaggctacccaggtctagatggtgctaaggga
gaagctggtgctccaggtgtgaagggagagagtggttcaccgggtgagaatggttctcca
ggcccaatgggtccccgcggcctgcccggtgagcgaggacggactggccctgctggtgct
gcaggtgcccggggcaacgacggccaaccaggcccagcaggccctccgggtcccgtgggt
cccgctggcggtcctggcttccctggtgctcccggggccaagggtgaagctggccccact
ggtgctcgcggtcccgagggcgctcaaggtcctcgcggcgaacctggtactcctgggtcc
cccgggccggctggtgcctctggtaacccaggaactgatggaattcctggagccaaagga
tctgctggtgctcctggcattgctggtgcccccggcttccctgggccccgtggtccacct
ggccctcaaggtgcaactgggcctctgggcccgaaaggtcagacgggcgagcctggtatt
gctggcttcaaaggtgaacaaggccccaaaggagaacctggccctgctggcccccaagga
gcccctggtcctgctggtgaagaaggcaaaagaggtgcccgtggagagcctggtggtgct
gggcccgtcggtccccctggagagagaggtgctcctggcaaccgtggtttcccaggtcag
gatggtctagcaggtccaaagggagcccctggagagcgagggcccagcggccttgctggt
cccaaaggagccaacggtgaccctggccgtcctggagagcctggccttcctggagcccgg
ggtctcactggtcgccctggtgatgctggtcctcaaggcaaagttggtccttctggagcc
cccggtgaagatggccgccctggtcctccaggtcctcagggtgctcgtgggcagcctggc
gtcatgggtttccctggccccaaaggtgccaatggtgagcctggcaaggccggggagaag
ggactgcctggtgctcctggtctgagaggtcttcctggcaaagatggtgagacaggtgct
gcaggaccccccggaccagctggacctgctggtgaacgaggcgaacagggtgctcctggg
ccatctgggttccagggacttcctggccctcctggtcccccaggtgaaggtggaaaacca
ggtgaccagggtgtccccggtgaggctggagcccccggcctcgtgggtcccaggggcgaa
cgaggtttcccaggagaacgtggctctcccggggcccagggcctccagggtccccgtggc
ctccccggcactcctggcacggatggtcccaaaggcgcatctggcccggctggcccccct
ggggctcagggccctccaggtctgcagggcatgcctggagagaggggagcggcgggcatc
gcagggcccaagggagacaggggtgatgttggcgagaaaggccctgagggagcccccggg
aaggacggtggacgaggcctgactggtcccattggcccccctgggcccgctggtgccaac
ggtgagaagggagaagttggacctcccggtcctgcaggaactgctggtgctcgcggcgcc
ccaggtgaacgcggagagactggaccccctgggcccgctggatttgcagggcctcccggt
gctgatggccagccaggtgccaagggcgagcaaggagaggctggccagaaaggtgatgct
ggtgccccaggtcctcagggcccctctggagctcctggtcctcagggtcctactggtgtg
actggtcctaaaggagcccgaggtgctcaaggccccccgggagccactggattccctgga
gctgctggccgcgtcggacccccaggctccaatggaaaccctgggcccccggggccccct
ggtccttctggaaaagatggtcccaaaggcgctcgaggagacagtggcccccctggccgt
gccggtgaccccggtctccaaggtcctgccggaccccccggcgagaagggggagcctgga
gaggacggaccctctggccccgatggtcccccaggtccccaaggtctggctggtcagagg
ggcatcgtcggtctacctgggcagcgtggtgagagaggatttcctggcttgccgggccca
tcgggtgagcccggcaagcagggagctcctggtgcatctggagaccgaggtcctcccggc
cccgtgggtcctcctggcctgaccggtcctgctggcgaacctggacgagagggaagccct
ggtgctgacggcccccctggcagagatggcgcggctggagtcaagggtgatcgtggtgag
accggtgccgtgggcgcccccggagcccccggggcccctggctcccccggccccgctggc
ccgactggaaagcagggagaccgaggagaagctggcgcacaaggccccatgggtcccgca
ggaccggcaggagcccggggaatcccaggccctcaaggcccccggggtgacaaaggagaa
gctggggaagctggcgagaggggactgaagggacaccgtggcttcaccggtctgcagggt
ctgcctggccctcctggtccttctggagaccaaggtgcttctggtcctgctggtccttct
ggccctagaggtcctcctggccctgtcggtccctccggcaaagatggtgctaatggaatc
cctggccccattgggccccctggtccccgtggacgttcaggcgaaactggccctgcgggc
cctcctggaaaccctggaccccctggccctccaggtccccctggccctggcatcgacatg
tctgcctttgctggcctcggtcagagagagaagggccccgaccccctgcagtacatgcgg
gctgaccaggcagccagtgacctgagacagcatgatgccgaggtggacgccaccctcaag
tccctcaacaaccagatcgagagcctccgcagccccgagggctcacgcaagaaccctgct
cgcacctgccgggacctgaaactctgccaccctgaatggaagagcggagactactggatc
gaccccaaccagggctgcaccttggacgccatgaaggttttctgcaacatggagactggc
gagacctgcgtctaccccaacccagcgaacgttcccaagaagaactggtggagcagcaag
agcaaggacaagaaacatatctggtttggggaaaccatcaatggtggcttccacttcagc
tacggtgatgacaacctcgctcccaacacggccaacgtccagatgaccttcctacgcctg
ctgtccaccgagggctcccagaatatcacctaccactgcaaggacagcattgcctacctg
gacgaagcagccggcaacctcaagaaggccctgctcatccaaggctccaatgacgtggag
atccgggctgagggcaacagccggttcacatacactgtcctgaaggatggctgcacgaaa
cacaccggtaagtggggcaagactctgatcgagtaccggtcacagaagacctcgcgcctc
cccatcattgacattgcacccatggacataggagggcccgagcaggaattcggtgtggac
atagggcctgtctgcttcttgtaa
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