Neomonachus schauinslandi (Hawaiian monk seal): 110593771
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Entry
110593771 CDS
T08474
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
nsu
Neomonachus schauinslandi (Hawaiian monk seal)
Pathway
nsu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nsu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110593771 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsu03019
]
110593771 (XAB2)
03041 Spliceosome [BR:
nsu03041
]
110593771 (XAB2)
Messenger RNA biogenesis [BR:
nsu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
110593771 (XAB2)
Spliceosome [BR:
nsu03041
]
Complex B
Other components
Prp19-related factors
110593771 (XAB2)
Complex C
110593771 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_12
TPR_2
TPR_8
Suf
TPR_19
TPR_15
ARM_TT21
ARM_TT21_C
TPR_NPHP3
TPR_1
Motif
Other DBs
NCBI-GeneID:
110593771
NCBI-ProteinID:
XP_021560816
UniProt:
A0A2Y9IAR4
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Position
1:complement(208697436..208709390)
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AA seq
855 aa
AA seq
DB search
MVVMARLSRPQRPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKRRCVTDPAYEDANNCHERAFVFMHKMPRLWLDYCQFL
MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNV
DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYA
QFEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEW
HKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARIILEK
ATKVSFKQVDDLASVWCECGELELRHENYDQALRLLRKATALPARRAEYFDGSEPVQNRV
YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA
YERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYA
QLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLS
DEHAREMCLRFADMECRLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTI
REMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLA
AEAERDQPPRAQSKILFVRSDASREELAELAQQANPEEIELGEDEDEDEMDLEPNEVRLE
QQSVPAAVFGSLKED
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgatggcgcgtctttcccggcctcagcggccggacctcgttttcgaggaagag
gacctcccctatgaggaggagatcatgcggaaccagttctcggtcaagtgctggctccgc
tacattgagttcaaacaaggtgccccaaagcccaggctcaaccagctgtatgagcgggcg
ctgaagctgctgccctgcagctacaaactctggtaccgatacctgaaggcacgccgggca
caggtgaagcgtcgctgcgtgactgaccctgcctacgaagatgccaacaactgccacgag
agggcctttgtgttcatgcacaagatgccccgtctgtggctggactactgccagttcctg
atggaccagggccgcgtcacgcacacccgccgcacgtttgaccgtgccctccgggcgctg
cccatcacgcagcactctcgtatctggccgctgtacctgcgcttcctccgctcgcacccg
ctgcctgagacagccgtgcggggctaccggcgcttcctcaagcttagccccgagagcgca
gaggagtacatcgagtacctcaagtccagcgaccggctggatgaagccgcgcagcgcctg
gccaccgtggtcaatgatgagcgcttcgtgtccaaggccggcaagtccaactaccagctg
tggcacgagctctgtgacctcatctcccagaacccagacaaggtgcagtcgctcaatgtg
gatgccatcatccgtgggggcctcacccgcttcactgaccagctaggcaagctctggtgc
tcgctggctgactactacatccgcagcggccactttgagaaggctcgagatgtgtatgag
gaggccatccggaccgtgatgaccgtgcgggacttcacccaggtgttcgacagctatgcc
cagtttgaggagagcatgattgcagccaagatggagacagcctcagaattggggcgggag
gaagaagatgacgtggacctggagctgcgcctggcccgcttcgagcagctcatcagccgg
cggcccctgctcctcaacagcgtcttgctgcgtcagaacccgcaccacgtgcacgagtgg
cacaagcgcgtggccctgcaccagggccgcccccgggagatcatcaacacatacacggag
gctgtgcagacggtggacccgttcaaagcgacaggcaagccccacacgctgtgggtcgcg
tttgccaagttttacgaggacaacgggcagctggacgatgcccgcatcatcctggagaag
gccaccaaggtgagcttcaagcaggtggacgacctggccagcgtgtggtgtgagtgtggc
gagctggagctccggcacgagaactacgaccaggccttgaggttgttgcggaaggccacc
gcgctgcccgcccgccgagccgagtacttcgacggctcggagcccgtgcagaaccgtgtg
tacaagtcgctgaaggtgtggtcgatgctcgctgacctagaggagagcctgggcaccttc
cagtccaccaaggccgtgtatgaccgcatcctggacctgcgcatcgccacgccccagatc
gtcatcaactacgccatgttcctggaggagcacaagtacttcgaggagagcttcaaggcg
tatgagcgcggcatctcgctgttcaagtggcccaacgtgtccgacatctggagcacctac
ctgaccaagttcatcgctcgctacgggggccgcaagctggagcgagcacgggacctcttt
gaacaggcgctggacggctgtcctcccaaatacgccaagacgctgtacctgctgtacgcg
cagctggaggaggagtggggcctggcccggcacgccatggccgtgtacgagcgcgccacc
agggccgtggagcccgcgcagcagtacgacatgttcaacatctacatcaagcgcgcagct
gagatctacggcgtcacccacacccgcggcatctaccagaaggccattgaggtgctgtcg
gatgagcacgcccgggagatgtgcctgcggttcgcggacatggagtgcaggcttggcgag
atcgaccgggcacgcgccatctacagcttctgctcccagatctgtgacccccggaccact
ggggctttctggcaaacgtggaaggacttcgaggtccggcatggcaatgaggacaccatc
cgggagatgctgcggatccgccgcagcgtgcaggccacatacaacactcaggtcaacttc
atggcctcgcagatgctcaaggtgtctggcagcgccacgggcaccgtgtctgacctggcc
cctgggcagagcggcatggatgacatgaagctgctggagcagcgggcagagcagctagct
gctgaggccgagcgggaccagcccccacgggcccagagcaagatcctgtttgtgaggagc
gacgcctcccgggaagagctggccgagctggcccagcaagccaacccggaggagattgag
ctgggcgaggacgaggacgaggacgaaatggacctggagcccaatgaggtgcggctggag
cagcagagtgtgccagccgccgtgttcgggagcctgaaggaggactga
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