Nicotiana sylvestris (wood tobacco): 104211237
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Entry
104211237 CDS
T05026
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1 isoform X1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03022
Basal transcription factors
nsy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
104211237
09124 Replication and repair
03420 Nucleotide excision repair
104211237
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nsy03021
]
104211237
03400 DNA repair and recombination proteins [BR:
nsy03400
]
104211237
Transcription machinery [BR:
nsy03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
104211237
DNA repair and recombination proteins [BR:
nsy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
104211237
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
GRAM
SHOCT
Motif
Other DBs
NCBI-GeneID:
104211237
NCBI-ProteinID:
XP_009758565
UniProt:
A0A1U7V9P9
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Position
8:7782986..7795442
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AA seq
599 aa
AA seq
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MADGKVVKRAKYKSSVKDPGVPGVLKLTKERFFFMPNDPTSTTKLNVEFKLIKGHRSSKE
GSSKQALLNLMHDQGRSYIFEFDSFPDRDKCREFVASAIAACGEVVKAASEKPAVPHDEQ
LSAAEMGRRIKLLQDNSELQKLHRQLVIGGILSEAEFWAARKKLLEQGDIKKPKQRVALK
NDMWSVKPLSDGQTNRVTFNLTPEVIHQIFAEKPAVRQAYLKFVPGKMSEKEFWTKYSRA
EYLHSTKNIVAAAAEAAEDEELAVFLKQDDMLAFEARKKIRRVDPTLDMEADEGDDYMHL
PDHGLPLDETKEILEPQYEPFKRSFSQYLNQHAAVVLRGRVIDVELGDTRSVAEAFTRTN
QAELAAEVSDESAYRERIAKVSRVAEIEDLQGPHEPPVALLSIKDPRDYFDSQQANAIKA
LGDGGTGTRQLKFNVSKEDAFCSLKNSISEINSQGLTEPIISPEVALKVLNGLSQNISST
KYHLGKNPHESVLDRLPSATKDELLLHWTSIQELLKHFWSSYPITAKYFYTKVTRLKDAM
SQIYPKLQEIKESVQSDFRHQVSLLVQPMLQALDAAFAHYDADIQKRSAKSGERPNGFA
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atggccgatgggaaggtcgttaagcgtgccaagtacaaatcttcagtcaaggaccctggc
gttcctggcgttttgaaattgaccaaggaacggtttttcttcatgccgaatgacccaaca
tccacgacaaagcttaatgtggagttcaagttgattaaaggccacaggtcttctaaagag
ggttcaagtaagcaggctcttcttaatctcatgcacgatcagggcaggagttatattttt
gagtttgatagcttcccggaccgcgacaagtgtcgagaattcgttgcctctgcaattgcg
gcttgtggagaagttgtgaaagctgcttctgaaaaacctgctgttccacatgatgaacaa
ctcagtgcagcagaaatgggacgtcggattaagttactgcaggataatagtgaattgcag
aaactccacaggcaattggtcattggaggtattctatcagaggctgaattttgggccgct
aggaagaagctactggaacagggcgatatcaagaagccaaaacaacgggtggctttaaaa
aatgacatgtggagtgttaaacctttatctgatggtcagacgaacagagttacatttaac
ttgacaccggaggttattcatcagatttttgctgagaaaccagctgtccgccaagcatat
ttgaaatttgttccgggcaagatgtcagaaaaagaattctggactaaatattcaagagct
gaatacctccacagcacaaaaaatattgttgcagcagctgctgaggctgctgaagatgag
gagcttgcggttttcttgaagcaagatgacatgttagcatttgaagctcgtaagaagatc
agaagggtggatccaactctggacatggaagcagatgaaggtgacgattacatgcatctc
ccggatcatgggctacctctggatgaaactaaagagattctggaaccacagtatgaacca
ttcaagaggtcgttctcgcagtacctcaaccagcatgcagcagtagttcttcgaggaaga
gttatagatgttgagctgggtgacacaagatctgttgctgaagcattcaccaggacaaat
caggctgaactagctgccgaagtgtctgatgagagtgcatatagagaacggatagctaaa
gtttctcgagttgctgaaattgaggatcttcagggacctcatgagccaccagttgcattg
ctaagtatcaaggatcctcgggattactttgattctcagcaagcaaatgcaataaaggct
ttgggggatggtggtacagggacaagacagctgaaatttaatgtgagcaaagaagatgcc
ttttgctccctgaagaactccatctccgagataaattcacaaggattgaccgaaccaata
attagtccagaagtagctctcaaggttctcaacgggcttagtcagaatatctcgagtaca
aagtatcatctgggaaagaacccccatgagagtgttttagatcggctgcctagtgcaacg
aaagatgaactattactccattggacatcaattcaggaattattgaagcacttctggtca
tcttatccaataaccgcaaaatatttctacaccaaggtgactagattaaaggatgcaatg
tctcagatataccccaagttgcaggagatcaaggaatctgtgcaatcggatttcaggcat
caagtttcccttcttgtacagccaatgcttcaggctttagatgctgcctttgcccattat
gatgcagatatacagaagagatctgccaaaagtggggagagaccaaatggatttgcttag
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