Nicotiana sylvestris (wood tobacco): 104211317
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Entry
104211317 CDS
T05026
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03013
Nucleocytoplasmic transport
nsy03015
mRNA surveillance pathway
nsy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104211317
09122 Translation
03013 Nucleocytoplasmic transport
104211317
03015 mRNA surveillance pathway
104211317
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsy03019
]
104211317
03041 Spliceosome [BR:
nsy03041
]
104211317
Enzymes [BR:
nsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104211317
Messenger RNA biogenesis [BR:
nsy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
104211317
Spliceosome [BR:
nsy03041
]
Complex C
Other components
EJC/TREX
104211317
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
104211317
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
DNA_repr_REX1B
Motif
Other DBs
NCBI-GeneID:
104211317
NCBI-ProteinID:
XP_009758663
UniProt:
A0A1U7UWW2
LinkDB
All DBs
Position
2:188782731..188805560
Genome browser
AA seq
428 aa
AA seq
DB search
MGDTKENDAYEEELLDYEEDDEKAPDSISAKVNGESAKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAAMV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKLHKELLKNECPHIVVGTPGRMLA
LARDKDLSLRNVRHFILDECDKMLESLDMRRDVQTIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSETEKNRKLNDLLDALDFNQVVIFVKSVS
RAAQLNKLLVECNFPSICIHSGMTQEERLTRYKNFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagacacaaaggagaacgatgcttacgaggaggagcttctcgactacgaagaagat
gacgaaaaagcccctgattccatctccgctaaagttaatggcgagtccgccaagaagggt
tacgttggcattcacagttctggattcagagactttctgctaaagccagagctattgcgg
gctattgtagattcagggtttgagcatccgtctgaagtgcaacatgagtgtattccacaa
gcaatcctaggcatggatgttatttgtcaagctaaatctggaatgggcaaaactgctgtt
tttgtcctttcaactctgcaacagattgaacctgttgctggtcaagttgctgccatggtt
ctatgtcacacaagggaattagcttatcagatctgtcatgaatttgagaggttcagcact
tatttgcctgatatcaaagttgctgttttctatggtggtgtcaatatcaaacttcacaag
gagcttctgaagaatgaatgccctcatatagttgttggaactcccggaagaatgcttgca
ttggctagagacaaggacctgtctttgaggaacgtgaggcattttatactggatgaatgc
gacaaaatgcttgaatcacttgatatgagaagagatgtgcagacaatcttcaagatgact
cctcatgacaagcaagtaatgatgttttcagcaacactcagcaaagagattcgccctgtt
tgcaagaaatttatgcaagatccaatggaaatttatgttgacgacgaggccaagttgacc
cttcatggacttgtacagcactacatcaaattgagcgaaacggagaagaaccggaagctg
aatgacctgctggatgctttggatttcaatcaagttgttatatttgtcaagagcgtgagc
agagcagcacagctgaacaagttgcttgttgagtgcaattttccatctatctgcatccac
tctggcatgactcaggaagagagattgactcgctacaagaatttcaaggaggggcacaag
agaattcttgttgcaactgatttggttggcaggggcattgacattgaaagggttaacatc
gttattaactatgacatgccagattccgcagatacttatcttcacagagttggtagagct
ggtaggtttggaactaaaggtcttgccatcacatttgtgtcatctgcatcagattctgat
gttcttaaccaggttcaggagaggttcgaagtggatataaaagagcttcctgagcagatt
gatacttctacatacatgccatcatag
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