Nicotiana sylvestris (wood tobacco): 104211804
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Entry
104211804 CDS
T05026
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A-like
KO
K12856
pre-mRNA-processing factor 8
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104211804
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nsy03041
]
104211804
Spliceosome [BR:
nsy03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
104211804
Complex C
U5 SnRNP specific factors
104211804
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
104211804
NCBI-ProteinID:
XP_009759234
UniProt:
A0A1U7VAD0
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All DBs
Position
12:complement(2464099..2478966)
Genome browser
AA seq
2391 aa
AA seq
DB search
MEFRFSEMPPAPGTSSGSAMMPPGTSGSSGGPAPPLPPPSYTVFPSLMPPPPGTSSGPAM
MPPGTSGSRGGPAPPSYTVLPTEAQLEEKARKWMQLNSKRYSDKRKFGFVETQKEDMPPE
HVRKIIRDHGDMSSKKYRHDKRVYLGALKFVPHAVYKLLENMPMPWEQVRDVKILYHITG
AITFVNEIPWVVEPIYLAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNLLD
VDPLEPIQLELDEEEDSAVYNWFYDHKPLVKTKLINGPSYRRWHLSLPIMATLHRLAGQL
LSDLTDRNYFYLFDMESFFTAKALNMCIPGGPKFEPLYRDMEKGDEDWNEFNDINKLIIR
SPLRTEYRIAFPHLYNNRPRKVKLGIYHTPMIMYIKTEDPDLPAFYYDPLIHPIVTKDRR
EKKVHEDDDDDDFNLPEGVEPLLNETPIYTDTTAAGISLLFAPRPFNMRSGRTRRAEDIP
LVSDWFKEHCPPSYPVKVRVSYQKLLKCFVLNELHHRPPKAQKKKHLFRSLQATKFFQTT
ELDWAEAGLQVCKQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFH
LCREILRLTKLVVDANVQFRLGNVDAFQLADGLQYIFSHVGQLTGMYRYKYRLMRQIRMC
KDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLLERWLGNLLARQFEGRHS
KGVAKTVTKQRVESHFDLELRAAVMHDVLDAMPEGIKQNKARTILQHLSEAWRCWKANIP
WKVPGLPVPIENMILRYVKSKADWWTNVAHYNRERIRRGATVDKTVCRKNLGRLTRLWLK
AEQERQHNYLKDGPYVTPEEAVAIYTTTVHWLESRKFSPIPFPPLSYKHDTKLLILALER
LKESYSVAVRLNQQQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMDLYSYL
IPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWIKPADSEPPPLLVYKWCQGINNLQGV
WDTSEGQCVVMLQTKFEKFFEKIDLTMLNRLLRLVLDHNIADYVTAKNNVVLSYKDMSHT
NSYGLIRGLQFASFVVQYYGLVLDLLLLGLTRASEIAGPPQMPNEFITFSDTRVETRHPI
RLYSRYIDKVHILFRFTHEEARDLIQRYLTEHPDPNNENMVGYNNKKCWPRDARMRLMKH
DVNLGRSVFWDMKNRLPRSITTLEWENSFVSVYSKDNPNLLFSMCGFEVRILPKIRMTQE
AFSNTRDGVWNLQNEQTKERTAVAFLRVDDEHMKVFENRVRQILMSSGSTTFTKIVNKWN
TALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVIFYTPKEIGG
LGMLSMGHILIPQSDLRYSQQTDVGVTHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQR
VWAEYALKRQEAQAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQ
YQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEHTLFKGTYFPTWEGLFWE
KASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHG
KIPTLKISLIQIFRAHLWQKIHESVVMDLCQVLDQELDALEIETVQKETIHPRKSYKMNS
SCADILLFAAHRWPMSKPSLVAESKDVFDQKASNKYWIDVQLRWGDYDSHDIERYTRAKF
MDYTTDNMSIYPSPTGVMIGLDLAYNLHSAFGNWFPGSKPLLAQAMNKIMKSNPALYVLR
ERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPIN
GAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEEVAALVRSLPVEEQPKQIIVT
RKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIEKFGDLILKATEPQMVLFNIYDDWL
KSISSYTAFSRLILILRALHVNNEKAKMLLKPDKSVVTEPHHIWPSLTDDQWMKVEVALR
DLILSDYAKKNNVNTSALTQSEIRDIILGAEITPPSQQRQQIAEIEKQAKEASQLTAVTT
KTTNVHGDELIVTTTSPYEQAAFGSKTDWRVRAISATNLYLRVNHIYVNSEDIKETGYTY
IMPKNILKKFICIADLRTQIAGYLYGVSPPDNPQVKEIRCIAMPPQWGTHQQVHLPSGLP
EHDFLNDLEPLGWMHTQPNELPQLSPQDVTSHARILENNKHWDGEKCIILTCSFTPGSCS
LTAYKLTPTGYEWGRANKDTGSNPHGYLPTHYEKVQMLLSDRFLGFYMIPDNGPWNYNFM
GVKHTVSMKYGVKLGTPREYYNEDHRPTHFLEFSNMEEGDTAEADREDTFT
NT seq
7176 nt
NT seq
+upstream
nt +downstream
nt
atggagtttcgatttagtgagatgccgccggctccaggtacaagctcaggatcggcgatg
atgcctcctggtacaagcggtagtagcggaggaccggctccgcctctgccaccgccttct
tatactgttttcccgtccttgatgccgccgcctccaggtacaagttcaggaccagcaatg
atgcctcctggtacaagcggtagtagaggaggaccggctccgccttcttatactgttttg
ccgacggaggctcagcttgaagagaaagctaggaaatggatgcagcttaactctaagcgg
tatagtgataagcgcaaatttggatttgtggagacgcaaaaggaagatatgcctccggag
catgttcgcaagattattagggaccatggggatatgtcatcaaaaaaatatcgtcatgat
aaacgtgtgtatctcggagctcttaaatttgtccctcatgctgtttacaaacttcttgag
aacatgcctatgccgtgggagcaggttcgagatgtgaaaatcctgtaccatattactggt
gctattacatttgttaatgagataccatgggttgttgaacctatatatctggctcagtgg
ggcactatgtggatcatgatgaggagggagaagagagaccggcggcatttcaagagaatg
cgttttcctccttttgacgatgaggagcctccgttagattatgctgataatcttttggat
gttgatccgttggagccaatccagttggagttggatgaagaagaagattcagctgtttat
aactggttttatgaccataagccactggtgaaaacaaagcttattaacggtcctagttac
cgcaggtggcatttgtccctccctataatggctacacttcaccggctggctggacagctg
ctttcagatctgactgatcgcaattacttctacttatttgatatggagtcctttttcact
gctaaagcattgaatatgtgcatacctggtgggcccaagtttgaacccttatatcgtgac
atggagaaaggagatgaagactggaatgagtttaatgatatcaacaaattgatcatcagg
tcacctctgaggacagagtacagaattgccttccctcacctctataacaacagaccaaga
aaggtgaagcttggtatatatcacactccgatgatcatgtacataaaaacagaggatcca
gatctacctgctttttattatgatcctcttatacatcccatagtcaccaaggaccggcga
gagaagaaagttcatgaggatgacgatgatgatgactttaacttgcctgagggtgttgag
ccattgctgaatgagactccaatctatactgatactactgctgctggtatttccctgttg
tttgccccacgcccatttaacatgagatctggtcggacaagacgtgctgaagatataccc
cttgtgtcagattggtttaaggagcattgtcctccatcatatcctgtcaaggtgcgtgtt
agttatcagaagttattgaaatgttttgtgttgaatgagctgcatcacagacctcctaag
gcccagaagaagaagcatctcttccgctcacttcaagccacaaaatttttccaaaccaca
gaacttgattgggctgaagctggtctccaagtttgcaagcagggatacaatatgctgaat
ctcttgatccataggaaaaacctgaattatcttcaccttgattacaattttaatttgaag
cctgttaagacactaactacaaaggaacgtaagaaatcccggtttggtaatgctttccac
ctttgtcgtgaaattctgcgtttgacaaagttagttgttgatgccaatgttcagttccgt
ctgggaaatgttgatgcatttcagctggcagatggcttgcaatacattttttcacatgtg
ggtcagttgacgggtatgtaccgttacaagtacaggcttatgaggcagattcgaatgtgt
aaggatttgaaacatttgatctattatcgattcaatactgggccagttggaaaaggtcct
ggttgtggtttctgggcacctatgtggagggtgtggttattcttccttcgtggtatagtg
cctcttttggaacgatggttaggaaatttactggcgaggcaatttgagggtcgccattca
aagggggtggccaaaactgtcacaaagcaacgtgttgaaagtcactttgacttggagctc
cgtgctgcagtaatgcatgatgtccttgatgctatgccagagggtatcaagcaaaataaa
gcgagaaccattttgcagcatctaagtgaagcatggcgttgttggaaggcaaatattcct
tggaaggtcccaggtttgcctgttcctattgagaacatgattctccgctatgtcaaatca
aaagctgattggtggacaaatgttgctcactacaaccgtgaacgtataagaagaggagca
accgttgacaagactgtgtgtcgtaagaaccttggaagattgactcgcctttggctgaag
gctgaacaggagcggcaacataactacttgaaagacggcccatatgttactccagaagaa
gcagtagctatttatactaccactgtgcattggttggagtcgaggaagttttctcctatt
ccattccctccattgtcatacaagcatgatacgaagctacttatccttgctcttgagaga
ctgaaagaatcttacagtgtggctgtgaggttaaaccagcagcaaagagaagagttgggc
ctcattgagcaagcttatgataatccgcatgaggcattgtcaaggattaagcgtcacctg
cttactcagcgtgccttcaaagaagttggcatcgagttcatggacttgtacagttacctg
attcctgtttatgagatcgaaccacttgagaagattactgacgcgtacctggaccagtac
ctatggtatgaaggtgataagcgccatctcttcccaaattggattaagcctgctgattca
gagccaccaccactattagtatataaatggtgtcaaggcataaacaatttgcaaggagta
tgggacaccagtgaaggacagtgtgtggtgatgctgcagacaaagtttgagaaattcttt
gaaaagattgacctgaccatgttgaacaggcttctgcgtttggtgttggaccacaatatt
gctgattatgttactgcaaaaaacaatgttgtgctgtcttacaaagatatgagccacaca
aactcatacgggctgatacgcggtcttcaatttgcttcgtttgttgtacagtactatggg
cttgtgctggatcttttgctcctaggtttaactcgagctagtgaaattgctggtccacca
cagatgcctaatgaattcataacctttagtgatactagagtggaaacgaggcatcctata
aggttgtattctcgctacattgacaaggtgcatatattatttcgcttcactcatgaagag
gctcgggaccttatccaaagatatcttactgagcatcctgatcccaacaatgagaacatg
gttggttataacaataagaaatgctggcctagagacgcaagaatgaggctcatgaagcat
gatgttaatcttgggagaagtgtcttctgggacatgaagaatcggctgcctagaagtatt
actacattggagtgggaaaacagctttgtctctgtttatagcaaagataacccaaacttg
ctcttcagcatgtgtggatttgaagttcggatactgcctaagataagaatgacccaagag
gcattcagcaatacaagagatggagtctggaatctacaaaatgagcagaccaaggaacgc
acagctgttgccttcttgcgtgtagatgatgagcacatgaaggtgtttgagaatcgtgtt
aggcagatcctcatgtcctctggttctacaacattcacaaagattgttaacaaatggaac
actgctcttattggcctcatgacatatttccgtgaagcaacagtgcatacccaagaatta
ctggacctgctggtcaaatgtgaaaacaagatacaaactcgtattaagattggtttgaac
tcaaaaatgccaagtaggtttcctcctgttattttctacacaccaaaggaaattggaggg
ctgggaatgttgtcaatgggtcacatattgatcccgcagagtgatcttagatatagtcag
caaacagatgttggtgtgacacatttcagaagtggaatgagccatgaagaggaccaattg
attccaaatctttatcgatatatacagccgtgggagagtgagttcatcgactctcagaga
gtttgggctgaatatgctttgaaaaggcaggaagcccaggcacagaataggcgtttgact
cttgaagatctggaagattcatgggatcgtggaatacctcgaatcaatacattattccag
aaggatcgccacaccctagcatatgacaaaggatggagagtgagaacagactttaaacag
taccaagttcttaagcagaatccattctggtggacacaccagaggcatgatggaaagcta
tggaacctgaataactatcgtactgatgtgattcaagctcttggaggagttgaaggaatt
cttgagcatacattattcaaaggaacatatttccctacttgggagggtcttttctgggag
aaagcttcaggttttgaggaatccatgaagtacaagaaattgactaatgctcaacgatct
gggcttaatcaaatccctaatcgtaggtttactctttggtggtcgccaacaataaatagg
gccaatgtctatgttggtttccaagtacagctggacctgaccgggatatttatgcatggg
aagattccaactctgaagatatctttgatacagatcttccgtgcacatttgtggcagaag
atccatgagagtgttgtcatggatctttgccaagttttggatcaagagttggatgcattg
gaaattgagactgtacagaaggaaacaattcatccaagaaagagttacaaaatgaatagt
tcatgcgctgacatcctcctctttgctgcacatagatggcccatgtcgaaacctagtctt
gtggccgaatcgaaggatgtgtttgaccagaaggctagtaacaaatactggatagatgtg
cagcttcgatggggtgactatgattctcatgatattgagcgttatacacgagcaaaattc
atggattacacaactgacaacatgtctatttatccatctcctactggtgtaatgattgga
cttgaccttgcttacaacttgcattccgcctttggtaactggttccctggttcaaaacca
ttgcttgcccaagccatgaacaagattatgaagtcaaatcctgcactctatgttctgagg
gaacgcataaggaaagggttgcaattgtattcttcagagcccacagaaccatatttatca
tctcagaattatggagagattttcagcaatcaaattatatggtttgttgatgacacaaac
gtgtaccgagtgaccatccacaagaccttcgagggaaatttgacgacaaagcccattaat
ggtgcaattttcattttcaatcctaggacaggtcaactgtttttgaaggtcattcacaca
agtgtgtgggcagggcaaaagcgtcttggccagctggccaagtggaaaacagccgaagaa
gtggctgcacttgtaaggtctttgcctgttgaagaacaaccgaagcaaattattgtgact
cggaaagggatgcttgatcctttggaggtccacttgctcgattttccgaatattgttatc
aaaggaagtgagctgcagttaccattccaggcctgtttgaagatagagaaatttggtgat
cttatactgaaggctacggagccacaaatggttctgttcaacatatatgatgattggttg
aagagcatctcatcctatacagcattctccaggctcattctcatcctgcgtgcactccat
gttaacaatgaaaaggctaagatgctactcaagcctgacaagtcggtcgttactgagcca
caccacatctggccttcacttacagatgaccagtggatgaaggttgaggtagcgcttaga
gatctcattctctcagactatgcaaaaaagaacaatgtcaacacatcagcattgacgcag
tctgagatccgtgatattatactcggagctgagattactcctccatcccagcagcgccaa
cagatagctgagattgagaaacaggccaaggaagcaagtcaactgacagcggttaccaca
aagaccacaaatgtccatggtgatgagttgatcgttactactacgagtccttacgagcaa
gctgcctttggctctaaaacagattggcgtgtgagagcaatttctgcaacaaatctctat
ctccgtgtgaaccacatatatgtaaattcagaggacataaaggagactggatatacgtac
atcatgccaaagaatattctgaagaagttcatttgcattgccgatctgcggacacaaatt
gctggttacttatatggtgtaagtccaccagataatcctcaggtgaaggaaatccggtgt
attgcaatgcctccacagtgggggacacatcagcaggtgcatctaccttccggtcttccg
gagcatgattttctcaatgacttggagcctttgggatggatgcacacacaaccaaatgaa
cttcctcagttgtctccacaggatgttacttcacatgctcggatcctggagaacaacaaa
cactgggatggagagaagtgtattatattgacatgcagcttcacaccagggtcttgttcg
ttaactgcatataagttgaccccaactgggtatgaatggggacgtgctaacaaagataca
ggaagcaaccctcatggttacctgccgactcattacgagaaggtccagatgctgttgagt
gaccgattccttggcttttacatgatacctgataatggtccatggaattacaacttcatg
ggagtgaagcacactgttagcatgaagtacggggtgaaattaggtacacctagggagtac
tacaatgaggatcaccgacctacacatttcctggaattcagcaatatggaggaaggtgac
actgctgaggcagatcgggaagatacatttacataa
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integrated database retrieval system
