Nicotiana sylvestris (wood tobacco): 104212125
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Entry
104212125 CDS
T05026
Name
(RefSeq) protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1
KO
K11661
helicase SRCAP/SWR1 [EC:5.6.2.-]
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
104212125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
nsy03036
]
104212125
Chromosome and associated proteins [BR:
nsy03036
]
Eukaryotic type
Chromatin remodeling factors
SRCAP complex
104212125
SWR1 complex
104212125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HSA
ResIII
DEAD
HDA2-3
Myb_DNA-bind_6
Myb_DNA-binding
Cas3-like_C
Motif
Other DBs
NCBI-GeneID:
104212125
NCBI-ProteinID:
XP_009759618
UniProt:
A0A1U7UZN6
LinkDB
All DBs
Position
3:24620201..24655478
Genome browser
AA seq
2136 aa
AA seq
DB search
MASKGYKSKPDHEIRVRRQKGLEAPKEPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQA
KKVAIRASKGMLDQATRGEKRVKEEEQRLRKVALNISKDIKKFWLKIEKLVLYKHQLELD
EKKKKALDKQLEFLLGQTERYSTMLAENLVSSPTTSKRTNSLSAPEALRIQLKEGSEGDV
KNRAGENLQSHSTGSDIDDDFDVQSEDEMEDDEHTIEEDEAVITKEEREEELAALQNEMD
LPLEELLKHYAVGEASRDCSPEKSGADVTVSSGEDSDKCRDDDVAIETNGGCSPAISGRR
SVESNGVLSVPNNQYPDLGQNKLKIPPKKYQELDKVNLLGVFNDEQDDDDYVLALGENKE
CNMDDETTLLEEEELAKAEPNDAADEIALLQKESELPLDELLARYKEDYDSDENVGDDSE
SYASASTAQNVSELSQVNDGLSDVLPTTVAETEEREVESMDKTGEERQSENFSESPAKNE
SEPNQVNDGPNDLLPTTVTETEEKEVRSMDKTVEERQGEDFSESPAKNESEPSQVNDGPS
DVLPATVTETEEKEVGSMDKTGEERQSDDIIADAAAAARSAQPTGNTFSTTKVRTKFPFL
LKFPLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIMTIALLAHLACEKGIWGPHLIV
VPTSVMLNWETEFLRWCPAFKILTYFGSAKERKIKRQGWLKPNSFHICITTYRLVIQDSK
VFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLM
PHIFQSHQEFKDWFCNPISGMVEGQEKVNKEVVDRLHNVLRPFILRRLKRDVEKQLPSKH
EHVIYCKLSRRQRNLYEDFIASSETQATLASSNFFAMISVIMQLRKVCNHPDLFEGRPIV
SSFDMSGIDMHLSSSICSILSHGIFSSINLGALGLLFTHLDFSMTSWESHDVQSIATPSS
LIEGRVTQIHGEETSLVLKRNKKFHGTNIFEEIQKALVEERLREAKERAASVAWWNSIKC
KRKPVYSTSLREIVTVKHPVHGIYCQKSNPLSYLYSSRLADLILSPVERFQKMVDQVETF
MFAIPAARSPAPACWCSKPGTSVFFSPTFKERSSKVLSPLLTPFRPAIVRRQVYFPDRRL
IQFDCGKLQELAGLLRRLKSGGHRALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTLPEQ
RQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQ
TREVHIYRLISESTIEENILKKANQKRALDDLVIQGGSYNTEFFKKLDPMELFSGHRTVS
LKNIEGEKNSNVTEVQLSNADVEAALQNVEDEADYMALKKVEQEEAVDNQEFTEEAVGRL
EEDELGNDDEMKADEPADHEVPVTTSGKELVAMSNASNPLKEQAITFAGKDDDIDMLADV
KQMAAAAAAAGQAILSFESQLRPIDRYAVRFLELWDPIIDKTAIESQGHFEETEWELDRI
EKLKEDMEAEIDDDEEPLVYERWDADFATEVYRQQVEALAQHQLMEELEAEAKEKELAEY
ENSMGHATASVPKSKSKKKAKKTKFKSLKKGGLASEPQALKDGSSIELLPIDDDVLSSEP
VTTPDSAQERKRRLATGDEDVKSSKKSKKLKKSSEVSSLVMHSTYHGKRQVESKGLKQYD
GGTMDAELRPISRSKMGGKISISPMPVKRVLTIKSEKPIRKGKTWYKDYFPSADSWLPQE
DAVLCASVHEYGPHWSLVSDILYGMTAGGVYRGRYRHPILCCERFRELIQRYVLSTTDGV
NDRSTNAGSIKGLLKVTEENVRLVLDIASEVPDHEPLVQKHFFALLSSVWKMSCRKSQTN
AFSSSQNGFYHSGSLFTLFTPTMNLGSTNYATGPLEKRFSNLSICAKLVAAALSDQQSAQ
SDERVSICDQREEASFPAEQLDVTLEFGAEKDNKIIPLPSPVTVKIRGPETPLHPGMMIA
EHQHFKSSLNVAENRFWAASSTESCLDWASLAFPVGDAKSRTPLTSQFLGKHKLSDSVKV
SKSKSRKIPTESSDVGRTKDLVILPMPSASNDSCARADVGLSFLAESGHDFEDRTLFNLN
SEFNLGSEDVFQHEYVPDFISGLDDWSVFPDFTDIG
NT seq
6411 nt
NT seq
+upstream
nt +downstream
nt
atggcttctaaagggtacaagtctaagccggaccatgaaatacgtgtccgacgtcaaaag
ggtcttgaagcacctaaagaacctcgacgacctaaaacacactgggatcatgttctggaa
gagatggtctggttgtcaaaggactttgaatcagagagaaagtggaagttggctcaggca
aagaaggttgctatacgagctagcaagggaatgcttgatcaggcgacacggggagaaaag
agagttaaggaagaagagcaacgtttgcgaaaagttgcactcaatatctcaaaggacatc
aaaaaattttggttaaaaatagagaagctggttctttacaagcatcagttggagttggat
gagaagaagaagaaagcacttgacaagcagctagagttccttcttggacaaacagaaagg
tactcaacaatgctcgcagagaaccttgtaagttcaccaactactagcaaacgaaccaat
tctttgtctgcaccagaagccttgagaattcaattaaaagaagggagtgaaggggatgta
aagaatcgtgcaggagaaaatcttcaatctcattcgactggtagtgatattgatgatgat
tttgacgtgcagtctgaagacgaaatggaagatgacgagcataccattgaagaagatgag
gctgttataactaaagaagaaagggaagaagagttagctgctttacaaaatgaaatggat
ctacctcttgaggagcttcttaagcattatgcagttggggaagctagcagagattgtagc
ccagagaagagtggtgcagatgttacggtcagttctggcgaggacagtgataaatgtaga
gatgatgatgttgctattgagaccaacgggggctgctcacctgccatttctggtcgtcgt
tctgttgaaagtaatggcgtcttatcagtaccaaataaccagtatcctgacctaggacaa
aacaagctaaaaattcctccaaagaagtatcaagagttagacaaagttaatttgttaggt
gtctttaatgatgaacaggatgatgatgattatgtccttgctcttggtgaaaataaagaa
tgcaatatggatgatgaaacaactttgttagaggaggaagaattggcaaaggcagagccg
aatgatgctgcagatgagattgcactgttgcaaaaggagagcgaacttcctttagatgag
ctccttgctaggtataaagaggattatgatagtgatgaaaatgtgggggatgattctgaa
tcatatgcgtctgcttcaacagcacagaatgtatctgaactgagtcaagtaaatgatgga
ctgagtgatgtactgcccactacagtcgctgagacagaagaaagggaagttgaaagcatg
gataaaacaggggaagaaaggcagagtgagaatttttcagaatcaccagcaaaaaatgaa
tctgaacccaatcaagtaaatgatggaccgaacgatttactgcccactacagtcaccgag
actgaagaaaaggaagttcgaagcatggataaaacagtggaagaaaggcagggggaggat
ttttcagaatcgccagcaaaaaatgaatctgaacccagtcaagtaaatgatggaccgagc
gatgtactgcccgctacggtcactgagacagaagaaaaggaagttggaagcatggataaa
acaggggaagaaaggcaaagtgatgatataattgctgatgcagcagctgctgccagatca
gcacaaccaacaggtaacaccttctcaacaaccaaagtgcggactaagttccccttcctt
ctaaaatttccccttcgtgagtatcaacatattggtttggactggcttgtaaccatgtat
gagaagaaacttaatgggatcctagcagatgaaatgggtttggggaagactatcatgaca
attgctcttcttgctcacctagcatgtgaaaaaggaatatggggtcctcatcttattgtt
gtcccaactagtgtcatgctaaactgggagactgagtttcttagatggtgtcctgctttc
aaaattttgacatattttggcagtgcaaaagagcgaaagattaaaaggcaaggttggttg
aagccaaactcgtttcatatatgtatcacaacttacagacttgttatacaggactccaaa
gttttcaagcgtaagaagtggaagtacttgattttagatgaagctcatctaataaagaat
tggaaatcgcaaagatggcaaacacttctcaattttaactcaaaacggcgtattcttttg
actggtacaccattgcagaatgatctcatggagctgtggtctctaatgcatttcttgatg
cctcatatttttcaatctcaccaggaattcaaagattggttctgtaatcctatatctgga
atggttgagggacaagaaaaggttaataaggaagttgttgatcgcttgcataatgtcctt
cgtccctttattctccgccggttgaagagggatgtggagaagcagcttccttcaaaacat
gagcacgtcatttattgtaagctatcaaggaggcagcgtaacttgtatgaagactttatt
gccagttcggagacacaagctactcttgctagttcaaatttttttgcaatgataagtgtt
ataatgcaacttcgcaaagtgtgcaatcaccctgatttatttgaaggacgtccaatagtg
agctcctttgatatgagtggtattgatatgcacttgagctcttccatttgctcgattctg
tcacatggtatcttttcatctatcaaccttggggctttggggctgttgtttacacatctt
gatttttcaatgacctcttgggagagtcatgatgttcaatccattgctaccccttcaagc
ttgattgagggtcgtgtgactcaaattcatggtgaagaaacttcactagtacttaaacgg
aataagaagtttcatgggacaaacatatttgaagagatccaaaaggcactcgtcgaggag
aggctaagagaagcaaaggagagagcggcatctgttgcatggtggaattccatcaagtgt
aagcggaaacctgtatattcaacaagtcttcgggagattgttactgtgaaacatcctgtt
cacggtatttactgtcagaaaagtaatcccttgtcatacctgtactcctctaggcttgca
gacttgatactgtcgccagttgagagattccaaaaaatggttgatcaggttgagactttc
atgtttgcaatccctgctgcacgttccccagcacctgcttgctggtgcagtaaaccaggt
acttccgtattttttagtccaacctttaaggagagatcttctaaggttctctctccgctt
ctcactccttttcgcccagccattgttagaaggcaagtctactttccagataggcggctc
atacaatttgactgtggaaagctgcaggagcttgcaggtttgttgaggcgattaaaatca
ggaggtcaccgtgcactaattttcacccaaatgacaaagatgcttgatgttttagaagct
ttcattaatttgtatggttacacttacatgcgtctggatggttctactctgcccgaacag
agacaaactttgatgcaacggttcaacacaaatccaaagattttcctttttattttatca
acccgcagtggtggagttggcatcaacttggtgggggcagacacagtcatcttttatgat
agcgactggaatccagctatggatcaacaagctcaagatcgctgtcatagaataggccag
acccgtgaagtacatatttatcgattgataagtgagagtaccattgaagagaatattttg
aaaaaagcaaaccagaagcgagctctggatgatttggttatacagggtggaagttacaac
actgaattcttcaagaaactggatccaatggaattgttctcaggccacagaacagtttcc
ttaaagaacattgaaggagagaagaatagcaatgttactgaggttcagctctctaatgct
gacgtggaggctgctctgcaaaatgtagaagatgaggcggattacatggctctgaagaaa
gttgaacaggaagaggcagtagacaatcaggagttcactgaagaagcagttggtaggttg
gaagaagatgaacttggtaatgatgatgagatgaaggctgatgagcctgctgatcatgaa
gtcccagttacaacatcaggcaaagaacttgtggctatgtcaaatgctagtaatccatta
aaagaacaagcaattacttttgctggtaaagatgatgacattgacatgttggccgatgtc
aaacagatggcagcagctgctgctgctgcaggacaagctatcttgtctttcgagagtcag
ttgcgtccaattgatcgatatgctgtacgttttctggagttatgggaccctatcatagac
aagacagctattgaatcacaaggtcattttgaagaaactgaatgggaattggatagaatt
gagaaattgaaggaagatatggaagcagagattgatgatgatgaagaacctttagtttac
gaaagatgggatgctgattttgcgactgaggtatacagacagcaggtggaggctttggct
caacatcagttgatggaggaacttgaagctgaagctaaagagaaggagcttgcagaatat
gagaactcgatggggcatgctacagcttctgttccaaaatccaagtcaaagaagaaggca
aagaaaacaaagttcaaatctttgaagaaaggaggtctagcttctgaacctcaagcttta
aaggacgggtcttcgatagagttgttgcccatagatgatgatgttctatctagtgagcca
gttacaacgcctgattctgctcaagagagaaagcgtagactagcaacgggtgatgaggat
gtgaagagctcgaagaagtctaaaaaattgaagaagtcctctgaggtatcttcgctggta
atgcattcaacttaccatggaaagcggcaggttgaatctaaaggattgaagcagtatgat
ggtggcaccatggatgccgaactcagaccaataagcagaagcaagatgggagggaaaatc
tcaatcagtccgatgcctgtaaagcgagttcttactattaaatcagaaaagccgattagg
aaaggtaaaacgtggtataaagattattttccatccgctgattcatggttgccacaagag
gacgctgtactttgtgcttctgttcatgagtatggtcctcactggagcttggtgagtgat
atcttgtatggaatgactgctggcggagtttatagaggaagatatcgtcaccctattctt
tgttgcgaaaggtttagggaacttatacagagatatgtgttatctacgacagacggtgta
aatgatagatccactaatgctggatcgataaaaggtcttctcaaagtgactgaggaaaat
gtccgtctggtgttagatattgcatcagaggttccagatcatgagcctcttgttcaaaag
catttctttgcccttctttcctctgtgtggaagatgtcatgccggaaaagccagacaaat
gcgttctcatcttcccagaatggcttctatcattctggaagtttgtttacactgtttaca
ccaactatgaaccttggttccacgaattacgcaacaggaccactggaaaagagattttct
aatttaagtatatgtgccaagttagtagcagctgctctctctgaccagcagagtgcacaa
agtgatgagagagtctccatttgtgaccagagagaagaggcttcttttcctgctgagcag
ttggatgttacactggaatttggggcagagaaagataataagataattcccttgccatct
cctgtaactgtcaaaatacgtggtcctgaaaccccattgcatccaggaatgatgatagct
gagcatcaacatttcaagtcttccctgaatgtggctgaaaaccggttctgggctgcgtca
agtactgaaagttgtttggattgggcttctcttgcttttcctgttggggatgccaagtca
cgaactccattgacatcacaatttttggggaagcacaagctctctgattctgtgaaggtc
tccaaatcaaagtccagaaagattccaacagaatctagtgatgttggtcggaccaaggat
ctagtaatcctgccaatgccatctgcatctaatgattcctgtgcaagagctgatgtggga
ttatcgttcctcgcagaaagtggacatgattttgaagacaggaccctttttaacctaaat
tcagaatttaacttggggagtgaggatgtattccaacatgaatatgttcctgacttcata
tcgggacttgacgattggtcagtttttccagatttcacggatatcgggtag
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