Nicotiana sylvestris (wood tobacco): 104212161
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Entry
104212161 CDS
T05026
Name
(RefSeq) pre-mRNA-processing factor 19-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03040
Spliceosome
nsy04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104212161
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
104212161
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nsy03041
]
104212161
04121 Ubiquitin system [BR:
nsy04121
]
104212161
03400 DNA repair and recombination proteins [BR:
nsy03400
]
104212161
Enzymes [BR:
nsy01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
104212161
Spliceosome [BR:
nsy03041
]
Complex B
Other components
Prp19 complex
104212161
Complex C
Prp19-CDC5 complex
104212161
Ubiquitin system [BR:
nsy04121
]
Ubiquitin ligases (E3)
U-box type E3
104212161
DNA repair and recombination proteins [BR:
nsy03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
104212161
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_MABP1-WDR62_2nd
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_SCAP
Beta-prop_IFT122_1st
Beta-prop_WDR19_1st
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_HPS5
Beta-prop_EIPR1
Beta-prop_DCAF12
Beta-prop_DCAF4
PROPPIN
U-box
Beta-prop_RIG_2nd
Beta-prop_SPT8
PEP5_VPS11_N
zf-Nse
WD40_like
PAS_11
KNTC1_N
V_ATPase_I_N
WDR54
B_lectin
TRAPP14_N
Nucleoporin_N
Motif
Other DBs
NCBI-GeneID:
104212161
NCBI-ProteinID:
XP_009759666
UniProt:
A0A1U7V3X5
LinkDB
All DBs
Position
10:complement(13989984..14003933)
Genome browser
AA seq
523 aa
AA seq
DB search
MNCSISGEVPEVPVVSMKSGLIFEKRLIERHISDYGKCPVTGEPLTMDDIIPVKTGKIVK
PRPVQAASIPGMLGMFQIEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK
ERDEARALLAQAERQVPVAATTTATNGDALSNGKRAAAAEEEMGPGGKKIRPGISGDVIK
ELQDCNAALSQQRKRRQIPATLAPVDAVERYTQLNSYPLHKTNKPGILSLDIHYPKDIIA
TGGVDSNAVIFDRPSGQIVSTLSGHSKRVTSIRFAAEGELVVTGSADKTVRVWQSSENGN
YDCKHTLKDHSAEVQAVTVHATNKYFVTASLDGTWCFYELASGLCLAQVADASESEGYTS
AAFHPDGLILGAGTSGALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYFLATAAQDGV
KLWDLRKLRNFRSFTPYDEDTATQSVEFDHSGSYLALGGSDIRVHQAASVKSEWNLIKTF
PDLSGTGKATCLKFGPDAKYIAVGSMDRNLRIFGLPGEDQSES
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atgaactgttcaatttccggtgaggtaccggaagtgccagtagtgtcaatgaaatctgga
cttatttttgagaagcgtttaattgaaagacacatctcggattatggtaaatgtccggtc
actggagagccactgacaatggatgacattattccagttaaaactggcaagatagtgaag
ccccgacctgtgcaggccgccagtattcctgggatgttgggaatgtttcagatagagtgg
gatggtctgatgctatccaattttgcattggaacaacaattacatactgcaaggcaagag
ctgagtcatgctctatatcagcatgatgctgcatgccgggtaattgctaggttgaaaaag
gaaagggacgaggcaagagcattgcttgcacaggctgaaagacaagtacccgtggcagca
actacaactgcaactaatggtgatgctttaagcaatgggaaaagagctgctgctgcggag
gaggagatgggtcctggtggtaagaaaattcgcccaggaatatcaggcgatgttattaaa
gagcttcaagattgtaatgctgctctttcacaacaaaggaaaaggcgacagattcctgca
acattggctccggttgatgctgttgaaagatatacccagctgaatagttatcctcttcat
aaaacaaacaaaccaggcattttgtctctggatatccattatcctaaggacatcattgct
actggtggagttgattcaaatgctgtgatctttgatcggccttcagggcagattgtatcg
acactaagtggtcactcaaagagggttaccagtatcagatttgctgctgagggtgaacta
gtagttactggctctgcagataagacagtacgtgtgtggcaaagctctgaaaatggaaat
tatgactgtaagcatactttgaaggatcacagtgctgaggtgcaagctgtcacagtccat
gcaaccaataagtactttgtgacggcttctcttgatggcacatggtgtttttatgaactt
gcttctggtttatgccttgctcaggtagcagatgcttcagaatctgagggctacacatct
gcagcttttcatcctgatggtctgatccttggagcaggaacttcgggggctctggtcaag
atatgggatgtaaaaagccaggcaaatgttgcaaaatttgatggccatgttggagcagta
actgcaatctccttctcagaaaatggttatttcttagcaaccgcagcccaagatggcgtc
aaactttgggatttacgcaaattgagaaacttcagaagctttactccttatgatgaagat
acagcaactcaatcagtggaatttgaccacagtggaagttatcttgcattaggaggctca
gatataagagttcatcaagctgcaagtgtcaagtccgaatggaatctcatcaaaactttc
cctgacttgtcaggcacaggtaaagcaacatgtctgaaattcggaccagatgcgaaatac
atagctgttggatccatggatcggaatttaagaatattcgggctgcctggggaggatcaa
tcagagagttag
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integrated database retrieval system
