Nicotiana sylvestris (wood tobacco): 104212448
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Entry
104212448 CDS
T05026
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104212448
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsy03019
]
104212448
Messenger RNA biogenesis [BR:
nsy03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104212448
mRNA degradation factors
5'-3' decay
Decapping complex
104212448
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
WDR55
Beta-prop_EML_2
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
104212448
NCBI-ProteinID:
XP_009760012
UniProt:
A0A1U7UVF3
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All DBs
Position
8:7805099..7816923
Genome browser
AA seq
1421 aa
AA seq
DB search
MASAGNPNQPGGVPFDMHKFFNPSTPPPTTSTNPNPQNPINPTLISSPFPLPSASYPPPT
AGGGGGGSGGLYYPPHTTTPFHHIPQFNPHIPTQYAPQQQDGHLHPQRSMSFPTPPLQPP
TPTSPHQFLNPNPNPNHGARLMALLSAPPSSTLEVSSQQPTTLQIIPPLQPTTSGSELSD
FSASPNVGPGPVRMQSTKLPKGRHLNGENVVYDIDARLPGEVQPQLEVTPITKYGSDPGL
VLGRQIAVNKSYICYGLKLGAIRVLNINTALRSLLKGLAQRVTDMAFFAEDVHLLASASV
DGRVYIWKITEGPDEEDKPQITGKIVIAIQIVGEGESVHPRVCWHCHKQEILVVGIGKHV
LKIDTTKFGKAGVFSADEPLRCPVDRLVDGVQLVGTHDGEVTDLSMCQWMTTRLVSASVD
GTVKIWEDRKPLPIAVLRPHDGNPVNSATFLTAPHRPDHIILITGGPLNREMKIWVSASE
EGWLLPSDADSWHCTQTLELKSSEARAEEAFFNQVVALSQAGLLLLANAKKNAIYAVHLE
YDLNPMATHMDYIAEFTVTMPILSFTGTSDLLPHGEQIVQVYCVQTQAIQQYALDLSQCL
PPPMENVVGFERTESSVSCDAARIEGYAPVDPPGSKQMEFPLTSSAPKSSVNESVTEIVA
TTRPPMIEARTALATSMEFASSTVESKSASLPSITTDTDIAPFASPPPLSPELARKLSGF
RSTSNSSERGPFINDHVGDPKVGEYSVDRQMDAIHPNLSGLTSSDGDPRNNDDEVSRDDG
SSGVGNPIKFKHPTHLVTPSEILMANSSSEVNHVNEQKSEGESSIQDVVINKEVRNVEVE
VKVGETRFNQKTDIGSQEELHTFVSENKEKAFCSQASDLGIEMARECHALSPETYIVEES
RQFDGACGTERLTQPSTAPEEDHDSAKEISGNDLDSKVQVSAHQLSAPSAKGKKQKAKNT
QGFRPSSPSPSAFNSSESIEGGVSSSNTSMEAAFSQILSMHEMLNQLLNMQKETQKQMGM
MVAVPVTKEGRRLEAALGRSMEKAVKANSDVLWARFQEESAKQENSLRDRTQQITNMISN
CFNKDMPGLIEKIMKKELAAVGQAVTRSIAPTVEKAVSTAISEAFQKGVSDKAVNQLERT
VSSKLEASVARQIQAQFQTSGKQALQETLKSTLEASVIPAFEISCKAMFEQVDLTFQKGF
AEHTAAALLQFESMHSPLALALRDAINSASSMTQTLSGELADGQKKLLTLAVSGANSNSP
NPLISHMSNGPLLHEKLEAPVDPTKELSRLLAERKYEEAFTAALQRSDVSIVAWLCSQVD
LPGILSMNPLPLSQGVLVSLLQQLACDVSKETARKLSWMRDVLTAINPTDPMIAVHVRPI
FEQVYQILIHHRNLPTTTPAELSSIRLIMHVINSMLMTCSK
NT seq
4266 nt
NT seq
+upstream
nt +downstream
nt
atggcttccgccggaaatccaaaccagcccggcggagtaccgtttgatatgcataaattc
ttcaatccttcaactcctccaccaacaacttcaacaaaccctaatccccaaaatcccatt
aaccccactttgatttcttccccatttccacttccttcagcttcttatcctccgcccacc
gccggcggaggcggcggtggtagcggaggactgtattatccacctcatacaacaacccct
tttcaccatatccctcaattcaatcctcatatccctacacaatacgcacctcaacaacaa
gatggccatttgcatcctcaaagatccatgtctttccctactcctccacttcaaccacct
actcctactagtcctcaccaatttttgaaccctaaccctaaccctaatcatggggcgaga
cttatggctttgttaagtgcaccaccttcttcaactctagaagtttcttctcagcaaccc
accactttgcaaattattcctcctttacagcctacaacttctgggtctgagctttctgat
ttttctgcttcaccaaatgttgggcccggtccggtccggatgcagagtactaagttgcct
aaagggaggcatttgaatggggagaatgttgtttatgatatagatgctcggttgcctggt
gaagtgcagcctcagctggaggttactccaattactaagtatggctcggatccgggcctt
gttttgggccggcaaattgcagttaacaaaagctatatatgttatggactcaaattggga
gctattcgagtgcttaatattaacactgcgttgagatcattgcttaaaggtcttgcacag
agggtcacagacatggctttctttgctgaagatgttcaccttttggctagtgcaagtgtt
gatgggcgtgtttacatatggaaaattactgaaggaccagatgaggaagataagccccaa
attacagggaagattgtcattgctattcaaattgttggtgaaggggaatctgttcatcct
cgagtttgttggcattgtcacaaacaagaaattcttgtggttggaatcggaaaacatgtt
ctaaaaattgataccacaaaatttggaaaagctggagttttttcagcggatgaacctctc
aggtgtcctgttgacaggttggttgatggggtacaacttgttggtactcatgatggagaa
gtaactgatttgtcaatgtgccagtggatgaccactcgattggtatctgcttctgtggat
ggcacggttaagatttgggaagaccggaagccactaccaattgcagttctcaggcctcat
gatggtaatcctgttaattcagctaccttcctgactgctccacaccgcccagaccacatc
atactcatcactgggggtccacttaatcgagaaatgaagatatgggtatcagcaagtgaa
gaaggctggttgcttcctagtgatgctgattcatggcactgtacacaaacgttagagttg
aagagttctgaagctcgtgctgaagaggcattttttaaccaagttgtagccttgtctcaa
gcaggtctgctcttactagcaaatgcaaaaaagaatgcaatatatgctgttcatctagag
tatgacctgaacccaatggcaacccatatggattacatagctgaatttacagttacaatg
ccaattttgagtttcactgggacaagtgatttactgcctcatggtgaacagattgttcaa
gtgtattgtgtgcagacacaggctattcagcagtatgctttggacttatcccaatgcttg
ccacctcccatggagaatgtggtgggcttcgaaaggacggaatctagtgtttcatgtgac
gctgctcgtattgaaggatatgctcctgttgatccccctggcagtaaacaaatggagttt
cctttaactagttctgcacccaaatcttcagtgaatgagagtgtcacagagattgtagct
acaacaagacctcctatgattgaagcacgcactgccttggccacctctatggaatttgct
tcttccaccgtggaatctaaatcagctagtttgcccagtataactactgatactgatatt
gccccctttgcatcaccaccgcctttgagtcctgagttggctagaaaactttctggtttc
agaagcacatcaaacagctcggagcgtggtccctttatcaatgaccatgttggggatcct
aaagttggtgaatattcagttgataggcaaatggatgccattcatccaaacttgtctggt
cttacttcgtcggacggtgacccaaggaataatgatgatgaagtgtcacgtgatgatggt
tcttcaggtgttggtaatccaatcaagtttaagcacccgactcatctggtgactccttca
gagatattgatggctaactcatcctctgaggtaaaccatgttaatgagcagaaaagtgag
ggagaatcgagtatccaggatgttgtaatcaacaaggaagtccgcaatgtggaggtggag
gttaaggttggtgaaacaagattcaatcaaaaaactgatattggctctcaagaagaactt
catacttttgtgtcggaaaacaaagagaaagccttttgctctcaggcatctgatcttgga
atagaaatggctcgagaatgtcatgccttatcgcctgaaacttatattgttgaggaatct
aggcagtttgatggggcttgtggaactgagcggctgacccaaccgtcaactgccccagaa
gaagatcatgactcggccaaggagatctctggaaatgatttagactcaaaggtgcaagtt
tctgcgcatcaactttcagctcctagtgccaaaggaaaaaagcaaaaggcgaagaacact
caaggatttagaccatcttcaccctcgcctagtgctttcaactcatctgaatccatcgag
ggtggtgtcagctcaagtaacacctctatggaagctgcattctcacaaattttgtccatg
catgagatgctaaatcagcttcttaatatgcaaaaagaaacacaaaagcagatgggtatg
atggtcgctgttcctgttaccaaagaaggaagaagactcgaggctgccttgggacggagc
atggagaaggctgtcaaggccaattccgatgtcttatgggctcgtttccaagaagagagt
gcaaaacaagagaactcacttcgtgatcgtactcaacaaataaccaatatgatatctaac
tgctttaacaaggacatgccggggctaattgagaaaataatgaagaaagaactggcagct
gttggacaagccgtcacacgcagtattgcccctacagttgagaaagctgtatcaactgct
atttcagaagccttccagaaaggagttagtgacaaggcagtgaaccaactggagagaaca
gttagctccaaactcgaagcttctgttgctaggcaaatccaagcacaattccaaacctct
ggcaagcaagctcttcaggaaactttgaaatctacattggaagcttcggtgatccctgcc
tttgagatatcatgcaaagcaatgtttgagcaagtagatttgacgtttcagaaaggattt
gctgaacacactgctgctgctctactacaatttgagtccatgcattcaccattagcactt
gctttaagggatgccattaattccgcatcatcaatgactcaaacattgagtggagagtta
gctgatggtcaaaagaagttgcttactcttgcagtttctggagctaattccaattcacca
aatccactgattagccacatgagtaatggaccattactgcatgagaagcttgaggctcct
gttgatccaaccaaagagctatctagattgttagctgaacgcaagtacgaggaagcattc
actgcagcgttgcaaagaagtgatgtgtctattgtagcatggttatgttctcaggttgat
ttaccgggtattttgtcgatgaatcctctccctttgagtcaaggagtacttgtttcgctt
cttcagcagttggcctgtgatgttagcaaggaaacagcccgaaaactgtcctggatgagg
gatgtgctaaccgccataaatccaactgatccaatgattgcagtgcacgtgcggcctatc
tttgagcaagtatatcagatactaatccatcatcggaatcttcctaccacaacccctgct
gaactttcaagcattcggctgattatgcatgtcatcaactcgatgctgatgacctgtagt
aaatga
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