Nicotiana sylvestris (wood tobacco): 104213830
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Entry
104213830 CDS
T05026
Name
(RefSeq) uncharacterized protein
KO
K24155
rabconnectin-3a
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
104213830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
nsy04131
]
104213830
Membrane trafficking [BR:
nsy04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
104213830
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
104213830
RAVE complex
104213830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rav1p_C
WD40
WD40_WDHD1_1st
Beta-prop_THOC3
WD40_Prp19
Beta-prop_WDR3_1st
WDR55
Beta-prop_WDR5
Beta-prop_WDR3_2nd
Beta-prop_EML
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_1st
Beta-prop_IFT140_1st
ANAPC4_WD40
EIF3I
Beta-prop_TEP1_C
WD40_Gbeta
Motif
Other DBs
NCBI-GeneID:
104213830
NCBI-ProteinID:
XP_070025639
LinkDB
All DBs
Position
1:complement(152310331..152344025)
Genome browser
AA seq
2512 aa
AA seq
DB search
MESHNISCCNSVDDVVSQLPLQLIKSEIIPPAPNRSKSPSEFEPAIDWQPNFAGYSWIAY
GASSLLVIRQFPNPISQNETVIGTVFQQVLELSIDGTGTVSAVAWSPVTPSSGDLAAALD
NCIGLFSYNSDASHSSFCWSQTSTLVQSTKVDSIIWTGSGDGIVSGGVELILWRKKERSW
EIAWRFKPQLPQTLISATWSIEGPLAAAPSHSEGSGLKIHAGHKCVLVCQRDADAGHLEA
MLPHPLPVSMIQWRPSLVTQSTRDGSYSRRLVLLTCCLDGAVRLWNEIDDGRVRKVGKDS
NDHKLSKFSFRVVAVVEVNQALNGMLGLDVSVRWATDINGIITVNEEAVTYTSSDEHQQS
NAGRCEWLIAVGPQTTLTFWAIHCLDDFSPVRAPRVTLWKRKELNSPNEVPRGLLLNKVL
IMRNQVFGPPAVCSFISLLPSNSLAWMQLYSSKFPEVSSELSSTDESPPNKCQTECLLSL
CARGLSNADSHCSKILQVAIHPCLSELEFAASLDTEGKLLFWLFSSASNTVVGLPTLSPS
WKLLGKGAIALPQQPKYTSLRWAPTLLSEERILVIGHVDGIDFLVVKAVKTEELEIVCDK
ICTIPLTAGSHGQGPDSVFSIPLPSTCNKTILNSFLLFAVWEKGFLALSWKIDLHHCDLS
ETRCGCSFDSANTLQNNIWKFESSYSGYTYLVSVEPCSSVLPEPHDNDKISSYAVICPTN
SGLTEEIFANNLYSNYFAYHMVTGCLDGSLLLWRSVPAGSSNSQWDLVGRIALQQGPVLA
ISASVCGRKIATISKGHLSTSAIHIWECARIEDAGSFILEDTLYFDAEVIASNWLTIGNG
QFLLGVCSRGKVQVFSQKRCGGQCNLEPEKSFEGNIWVCLAASDTNPTIQDFFWGPKAMI
VVVHDEYISLFSKFSYFMNKKLLPQLGGKVCKDSSVCHYGSNKVPIFYGHNNCDYAQYQA
NFPLKMEVVNETSLFSSLTKSKEGFTSVKNGIWSILEIAELVGGSLPLVHPEAILVNLLS
GNWKRAYVALQCLSKHVASSKLSAEICCLRAFSGLIFPISLSNYLEGHVLLSTGEKSFQW
GGPSEVQNGFLQASSSWGDAASDSISSARSEITDFLEAFDKLHNFATISSTEMMQIRAAI
HLLDEVSNMQSTSAYNSLDGPGRRFWVSVRFQQLYFVQRFGRLPSEGELVVYSGLIGWAF
HSDCQENLFDSLLSKEPSWQEMRDMGVGLWYTSVAQLRVKMEKLARQQYLKKRDPKACAL
LYIALNRLQVLAGLFKISKDEKDKPLVAFLSRNFQEDKNKAAALKNAYVLLGKHQLELAI
AFFLLGGDTTSAVTVCVKNLGDEQLALVICRLVEGYGGTLEHYLISKLLLPSALAKGDYW
LASVLEWILGKPSHAFLRMLAFPTGSLNDKSRFSSRQPAFLDPSVGDFCLMLAAKTTMKN
SIGEQNAAALSRWAILMRATALSRCGLPLDALECLSSSVSIIGGPTGGSVADNVDSGYLH
EMLRAMLNETSSNWLSSDVALRIESHMRSDLSMQYLCKMLRRHPSWVDHGMICLQGHMDT
VSENEEYKLSVEAFQDELMTTIASFQLKFSLIPLHLMYLTFLSFCNGGLAYTGCYLLRDY
INKYLSMEQGHELDGCSLYAFLPKLFLEVSGELFYISARYIIMCSMDCFYLKSFALRSNG
ADENIYGAVLELYKKRLSWSLWCLRATMQFSSVSSAENFVGTHFTILDLTEYLLLFASAL
VQRDYSVLLLIVKPLLMARTSDETGIKDIQKLLCEIRETVAHDLSIHDAGSSFQNKNQMP
RAQFGDVMLSVPEERWHVMVASFWGYVSSFLKYKLNLLSPEHEESDLFLPPGGHPSVSTS
LNCVNGNNVSTHNGIVPGLLAKILKITCTHISSYCTNRFASILLESIDPGATTIFWSEDY
PSLHKAPDTKLSHRNNDLDKLTAEDELSAFEALWDICSELKKANQGFLLQDQKFLQHTLL
KSFKGWNEMYPSIVRECEAEETCDRDDRFGSPSSAAGSPLACLSPNNHPFQSSGGKDTNH
TKKVLPFRSPMEIYKRNGELLEALCINSVDQHEAALASNRKGLLFFNWEDGLPCANRFDN
VWAEADWPHNGWAGSDSTPIPTCVSPGVGLGSKKGTHLGLGGATVGAGFQARPTFGLPGY
ANTGGSSLGWGVQEDFDEFLDPPATVENVRTRAFSTHPSRPFFLVGSSNTHIYLWEFGKD
RATATYGVLPAANVPPPYALASVSAVKFDHCGHRFVSAASDGTVCTWQLEVGGRSNIRPT
ESSLCFNNYTSDVTYVTSSGSIIAAAGYSSSGVNVVIWDTLAPPATSRASIMCHEGGARS
LAVFDNDLGSGSISPLIVTGGKGGDVGLHDFRYIATGKAKRQKHTEIGDHGVNSMVDMKK
KTGDQNRNGMLWYIPKAHTGSVTKISTIPHTSFFLTGSKDGDVKLWDAKNAKLVFHWPKL
HERHTFLQPSSRGFGGVVQAAVTDIQIVPHGFLTCGGDGAVKLVMLNDLLRL
NT seq
7539 nt
NT seq
+upstream
nt +downstream
nt
atggagagtcataatatcagttgttgtaactcagtagacgacgtcgtttcgcagttacca
cttcagctgatcaaatcggagatcatccctccggcaccgaaccgatcaaaatctccgtcc
gaattcgagccagcaattgactggcagcctaacttcgctggctactcatggatcgcctac
ggtgcctcgtctctcctcgtcatacgtcaattccctaatcctatctcacaaaatgagact
gtaatcggcacagtttttcagcaggtcctcgagctgtcaatcgacggcactggcactgtc
tccgccgttgcttggtccccggtgacgccttcttctggagaccttgccgccgcactcgat
aactgcattggattgttttcttacaattctgacgcttctcatagttctttttgttggagc
cagacctcaacactagtacaatctacaaaggtggactcaatcatatggacgggatcagga
gatgggatagtttcaggtggcgttgaattgatattatggagaaagaaggagagatcgtgg
gaaatagcttggagatttaaaccacaactgcctcagactctgatttctgctacttggtca
attgaaggacctttggctgctgcaccttcacatagtgaaggttcgggtttgaaaatccat
gcaggacacaaatgtgttttggtatgtcaaagagatgcagacgccggacatttagaagct
atgctaccccatccgttaccagtttctatgattcagtggagaccatctttagttacacag
tcaactagagatggcagctattctaggaggttggtgttattaacatgctgtttagatgga
gctgtaaggctctggaatgagattgatgatgggagggttagaaaagttggcaaggatagt
aatgatcacaaactgagtaaattctcttttcgtgttgtcgctgtagttgaggtaaaccaa
gcattaaatggaatgctgggcttggatgtgtctgtaagatgggcaacagatattaatggt
ataataactgtcaatgaggaggctgtgacatatacctcatcagatgaacatcaacaaagc
aatgctggcaggtgtgaatggttgattgccgtaggtcctcaaacgacactgaccttttgg
gctattcattgtcttgatgatttttctccagtgagagccccaagggtgacattgtggaaa
agaaaagagttgaacagtcctaacgaggtgccaaggggattgctcttaaataaagtcctt
atcatgagaaatcaggtctttggtccaccagcagtgtgttcttttattagtctattacca
agtaactctctagcctggatgcagttatattcttcaaaattccccgaggtatcttcagaa
ctgagtagcacagacgagtcgcctccaaataaatgtcagactgaatgtttactatcacta
tgtgcaaggggactttcaaatgcagacagtcactgcagtaaaattctgcaagttgcaatt
catccttgtttatctgagttggaatttgctgcctccctggacactgaaggaaagctcctc
ttttggttgttttcttctgcttcaaatactgttgtgggcctcccaactttgagcccatct
tggaaactgcttggaaaaggtgcgatagcactccctcaacaacccaagtatacaagctta
agatgggcacccactctgttaagtgaagaacgtattcttgtcattggacatgtagatgga
atagattttttagtagttaaggctgtgaaaactgaagaattggaaatagtttgtgacaaa
atatgtactataccacttaccgctggaagtcatggacagggcccggatagcgtcttttca
attccgttgccttccacttgtaacaaaactattttaaatagctttttgctgtttgctgtg
tgggaaaaaggctttctggcattatcgtggaaaattgaccttcatcactgtgatttgtcg
gaaacacgctgtggttgcagttttgacagtgcaaacaccttgcagaacaatatatggaaa
tttgagagtagttattctggttatacataccttgtgtctgtcgaaccttgttcatcagtt
ttgccagagccccatgacaatgataagatttcaagttatgctgtgatctgtcccacaaac
tctggtttaactgaagaaatttttgctaataatttatatagcaactactttgcttatcat
atggtcactggttgtcttgatggtagcttgctattatggagaagtgtgcctgctgggagc
tcgaattctcaatgggatcttgttggtcggattgctttgcagcaaggccctgttttggct
atatctgcaagtgtctgtggcagaaaaattgcaactatctcaaaaggtcacttaagtact
tctgctattcatatatgggaatgtgcgcgaattgaggacgctggcagctttatactagaa
gacactttatattttgatgcagaggttattgcttcaaattggttgacgatagggaatggt
cagtttttacttggagtttgctcaagaggtaaggtgcaggtgttttctcaaaagcggtgt
ggaggtcaatgcaatttggaaccggaaaaatcatttgaaggcaacatctgggtatgtctt
gcagcaagtgatactaaccctaccattcaagacttcttttggggacccaaagccatgata
gtggttgttcatgatgaatatatttctctgtttagcaagttctcatactttatgaacaag
aaacttctgccccagcttggtggaaaagtttgcaaggacagttctgtctgtcattatggt
tctaataaagtgccaatattttatggtcataacaattgtgactatgcacagtatcaggct
aatttccccttgaaaatggaagtggttaatgagacttcactatttagtagcttgacaaaa
tctaaagaaggctttacttctgttaaaaatgggatctggagcattttagagatagcagaa
cttgtaggaggatctcttcctcttgttcacccagaggcaattcttgtaaacttactttca
ggtaattggaaacgtgcatatgtagctctgcagtgtctcagtaaacacgtagcttcctca
aagttatcggcggaaatatgctgccttcgagccttcagtggtttaatatttcccatttcg
ttgtcaaactatcttgaaggacatgtcttgttaagcactggggagaagtcatttcaatgg
ggtggaccttcagaggttcaaaatggtttcctccaagcttcctcaagctggggagatgct
gcatctgattctatctcttctgcaagatctgaaattactgactttctagaagcctttgat
aaacttcataattttgcaactatatcttccactgaaatgatgcaaattcgtgctgctatt
catcttctagatgaagttagcaatatgcagtcaacttctgcctataatagccttgatgga
cctggtcgaaggttttgggtttcagtgaggtttcagcagctgtattttgttcaacgattt
ggcagactgccatcagaaggtgagctggttgtgtactcggggctgattggatgggctttc
cactctgattgccaagagaatttgtttgattctcttttatctaaggaaccatcttggcaa
gaaatgcgcgatatgggtgttggattatggtatacaagtgtggcacaactgcgagtgaag
atggaaaagctggcaaggcagcaatatttgaagaaaagagatcccaaggcatgtgcactt
ctgtatattgcattgaataggcttcaagttttagcgggccttttcaagattagcaaagat
gagaaagacaaacctctggtggcatttctttcacgaaattttcaggaagataaaaataag
gcagctgctttaaagaatgcatacgtattactgggaaaacaccagttggagcttgcaatt
gctttctttttgcttggaggagataccacatctgctgtcactgtttgtgtgaagaatctt
ggggatgagcagcttgcgcttgtaatttgccgacttgttgaaggttatggtggaacgcta
gagcattaccttatttcgaaattgcttctcccatctgctcttgccaaaggtgactactgg
cttgcaagcgtactggagtggatattaggaaaaccctcacatgcttttcttagaatgctt
gctttcccaacgggttccttgaacgataagtcaagattctcatcccgtcaacctgccttc
ttagatccaagcgttggtgacttttgcttaatgttagcagccaaaactaccatgaagaat
tctattggggagcaaaatgctgctgccttgagtagatgggcgatcttgatgagggccact
gccttaagcagatgcggtctacctcttgatgctttggaatgcctttcatcttctgtgagc
atcattggtggtccaactggaggaagtgtggctgataatgtggactctggatacctgcat
gaaatgctgcgtgcaatgctaaatgaaacttcatcaaactggctatcatcggatgtggct
ttacggatagaatcacacatgagatcagacttgtctatgcaatacttgtgtaagatgtta
aggagacatccaagctgggtagaccatggtatgatatgtcttcagggacacatggatact
gtatcagagaatgaagaatacaagctttcagtcgaagcttttcaagatgaactgatgacg
acaattgcatcctttcaactgaaattctccttaattcctctacatcttatgtacttgact
tttttgtcattttgcaatggtggtttggcgtatacaggatgctacttgttgcgagactac
ataaataaatatctgtcgatggagcaaggccatgaacttgatggttgctcattgtatgct
ttccttcccaagctatttcttgaagtatctggagaattattttatatttctgcaagatac
atcattatgtgtagcatggactgtttctacttgaagtcattcgcccttaggagtaatgga
gctgatgaaaatatttatggcgccgtcttagagctgtataaaaagaggctgtcttggtca
ttatggtgtcttagagccacaatgcagttttcttcagtttcttctgcagaaaattttgtg
gggacacatttcaccatccttgatttaacagagtatttgttactgtttgcatctgctttg
gtacaaagagattacagtgttcttctcctgattgtgaagcctctcttgatggcaagaact
tcagatgagacaggcataaaggatatacaaaaactgctttgtgagattcgagaaacggtg
gctcatgatttatctattcatgatgctggatcttctttccagaacaagaatcaaatgcca
cgggcacaatttggggatgttatgttgtctgttccggaagagagatggcatgtcatggtt
gcttctttttggggatatgtatctagctttttaaaatacaagctaaatctgctatctcca
gaacatgaagaaagcgatttgtttctacctccaggcggacatcccagtgtatccacttca
ctaaactgtgtaaatggcaacaatgtctcaacccacaatgggattgttccaggacttctg
gcgaagatactaaagatcacatgtactcacatctcttcttactgtacgaatcggtttgca
tccatcctgctggagagcatagatccaggtgcaactactattttctggtctgaagattat
ccgtccctacataaagcgccagatactaaacttagtcatagaaataatgatctggataag
ctgactgctgaagatgaattatcagcatttgaggcattatgggatatttgttctgagctt
aagaaagctaatcagggatttttgcttcaagaccagaagtttttacagcataccttgcta
aagtcctttaaaggatggaatgaaatgtaccccagcattgtaagagagtgtgaagctgag
gaaacttgtgacagagacgataggtttggtagtccaagcagcgcagctggatctcctctt
gcttgtttgtcaccaaataatcatcctttccaaagttccgggggaaaagatacgaaccat
acaaagaaggttttgccttttcgtagtccgatggagatatataagagaaatggagaactt
ttggaggctttgtgcatcaactccgttgatcaacatgaagctgctcttgctagcaatcgg
aagggattattattcttcaattgggaagatggacttccttgtgcgaacagatttgataat
gtctgggcagaagctgattggccacataatggttgggcgggatccgattctacaccaatt
cctacttgcgtctctcctggagtgggtctcgggagtaaaaagggcacacacctcgggcta
ggtggagcaactgttggcgcaggttttcaggcaagacctacatttgggcttccaggttat
gccaatacgggtggatccagtcttggctggggagttcaagaggattttgatgagtttctt
gaccctcctgccaccgtagaaaatgttaggacaagggcattctcaactcacccttcaagg
ccttttttcttggttggctcaagcaatacacacatatatttgtgggagtttggcaaagat
agagctactgcaacatatggagtgcttcctgctgcaaatgtccctccaccatatgctctt
gcttctgtatctgccgtgaaatttgatcattgtggtcacagatttgtatctgctgcttcg
gatggtactgtgtgcacgtggcagcttgaagtaggaggcagaagtaacattcggccaaca
gaatcctctctttgctttaataattatacatcggatgtcacatatgttacgtcaagtggt
tctatcatagctgccgcgggatatagctccagtggtgttaacgttgtcatatgggacaca
cttgctccaccagcgacatctcgagcctccataatgtgtcatgaaggaggtgcacgctcc
ctagcagtgtttgataatgatttaggaagtggttctatttcccccctcattgtgacgggt
gggaaaggtggtgatgttggacttcatgatttccggtacatagctactggaaaggcaaaa
agacagaagcatacagaaattggtgatcatggtgtgaattccatggttgacatgaagaag
aaaaccggtgatcagaatcgtaatgggatgctctggtatattccgaaggctcacacaggg
agtgttaccaaaatatcaaccataccacataccagttttttcttgacgggaagtaaagat
ggagatgtaaaactttgggatgccaaaaatgcaaaattagtatttcattggccaaaattg
cacgaaagacacaccttcttgcagccaagctcccgtggctttggtggtgtggtacaggca
gctgttacagatattcaaattgttcctcatggttttcttacatgtggtggagatggtgcc
gtaaagcttgtgatgctcaatgatctcttaaggctgtga
DBGET
integrated database retrieval system
