Nicotiana sylvestris (wood tobacco): 104214220
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Entry
104214220 CDS
T05026
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
104214220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsy03019
]
104214220
03009 Ribosome biogenesis [BR:
nsy03009
]
104214220
04131 Membrane trafficking [BR:
nsy04131
]
104214220
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nsy04147
]
104214220
Messenger RNA biogenesis [BR:
nsy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
104214220
Ribosome biogenesis [BR:
nsy03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
104214220
Membrane trafficking [BR:
nsy04131
]
SNARE
SNARE associated proteins
Others
104214220
Autophagy
Aggrephagy
Other aggrephagy associated proteins
104214220
Exosome [BR:
nsy04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
104214220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
CDC48_2
AAA_16
AAA_2
AAA_33
AAA_5
AAA_22
AAA_14
NPHP3_N
TIP49
RNA_helicase
AAA_18
AAA_17
AAA_28
Mg_chelatase
nSTAND3
ATPase_2
IstB_IS21
AAA_lid_PRS2_C
Viral_helicase1
Parvo_NS1
ABC_tran
AAA_7
DUF815
Vps4_C
TsaE
NB-ARC
NACHT
RCF1-5-like_lid
Zot
Molydop_binding
ATP-synt_ab
Motif
Other DBs
NCBI-GeneID:
104214220
NCBI-ProteinID:
XP_009762168
UniProt:
A0A1U7V6Z3
LinkDB
All DBs
Position
3:complement(174543149..174548240)
Genome browser
AA seq
810 aa
AA seq
DB search
MADPTCSTSDPTSSKKDFSTAILERKKSPNRLIVDEALNDDNSVVSMHPAKMEELQLFRG
DTVLLKGKKRKDTVCIVLADDQCEEPKIRMNKVVRANLNIRLGDVVSVQQCPDVKYAKRV
HILPIDDTVEGLTGNLFDAYLKPYFLESYRPVRKGDLFVVRGGMRSVEFKVVETEPGEYC
VVAPDTEIFCEGEPVKREDEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKAIGV
KPPKGILLYGPPGSGKTLIGRAVANETGAFFFLINGPEIMSKLAGESEGNLRKAFEEAEK
NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRSHVIVMGATNRPNSIDP
ALRRFGRFDREIDIGVPDEVGRLEILRIHSKNMKLADNVDLERVARDTHGYVGADLAALC
TEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQTALGASNPSALRETVVEVPNIS
WEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC
QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIAMQRGHSVGDAGG
AADRVLNQLLTEMDGMTAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQ
IFKACLRKSPVSKDVDLAALSRYTHGFSGADITEICQRACKYAIRENIEKDIERERKRSE
NPEAMDEDDSDEVAEIKPAHFEESMKYARRSVSDADIRKYQVFAQTLQQSRGFGTEFKFA
EHAANTTATGATTNPFASANAAGDDDDLYS
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atggcggacccaacttgttccacttccgacccgacaagtagtaaaaaagatttttcaact
gcaattttggagaggaagaaatcccctaaccgccttattgttgatgaggccttaaatgat
gacaattcagtggtatctatgcatcctgctaaaatggaagagctgcaactatttcgagga
gataccgtcttgctaaagggtaaaaaacggaaggacactgtttgcattgtccttgcagat
gatcaatgtgaagaacctaagatcagaatgaacaaagtagttcgagctaatcttaatatt
cgtcttggggatgttgtatctgtacagcagtgtcctgatgttaagtatgcgaagcgtgtt
cacattcttccaattgatgacacagttgagggtctcactggcaacctgtttgatgcgtac
ttgaagccatacttcttggagtcttaccgtcctgtcaggaagggcgatctcttcgtagtc
agaggtggtatgcgcagtgttgaatttaaagtggttgagacggagcctggagaatattgt
gttgttgcacccgatacagagatcttttgtgagggagaacctgtcaagcgtgaagatgag
gagagactaaacgaagttggatatgacgatgttgggggtgtgaggaagcaaatggctcag
attcgtgagctcgttgaactccctctgaggcatcctcagctattcaaggcaattggtgtg
aaaccaccaaaaggtattctcctgtatggtcctccgggatcggggaaaaccctgattgga
agagctgtggccaatgagacaggtgcatttttctttctgattaatggacctgaaataatg
tctaaattggctggtgagagtgagggtaacttgaggaaggcatttgaggaagccgagaag
aatgcaccatccatcatatttattgatgagctagactcaattgctccaaagcgagaaaag
acacatggtgaagttgagcggcgtattgtttcccaacttctgacattaatggatgggctc
aagtctcgatctcatgtgattgtcatgggggccaccaacagacctaacagcattgatcct
gctctcaggagatttgggagatttgaccgagagattgacattggcgtaccagatgaagta
gggcggttggagatcctacgtattcatagcaaaaatatgaagctcgctgataatgttgat
ctagaaagagttgcaagagatacgcatggttatgttggagctgatcttgctgccttgtgc
actgaggctgcgctgcaatgtatcagagagaaaatggatgttattgacttggaggatgag
actatcgatgctgaagttttgaattcaatggctgtcactaatgagcattttcaaactgct
ctgggtgcttcaaatccatcagcattacgtgaaacagttgtggaggttcccaacatctct
tgggaggatattgggggcctggacaatgtcaagcgggaacttcaagagactgttcagtac
ccagttgagcatcctgagaagtttgagaagtttggcatgtcaccctctaaaggggttctt
ttctatggacctcctggttgtggtaaaactttgcttgcaaaagctattgcaaacgagtgt
caggctaactttattagtgtgaaaggaccggagttgcttacaatgtggtttggagaaagt
gaagcaaatgttcgggaaatatttgacaaggcacggcagtctgctccatgtgtactgttc
tttgatgaacttgattccattgctatgcagagggggcattctgtgggagatgctggtggt
gctgctgatagagtactcaatcaattgttgacggaaatggatggaatgacggcaaagaaa
acagtattcatcattggggcaactaataggccagacattattgaccctgcactgctcaga
ccaggtcgtctagaccaattaatttacatccccctgcctgatgaagcttcccgtcttcaa
atcttcaaagcatgtttgcggaagtcccctgtctctaaggatgtggatctggcagctctc
tcacggtatacacatggttttagtggtgcagacataactgagatttgtcagcgagcatgc
aaatacgccatcagagaaaacattgaaaaggatattgagagagagagaaagaggagtgag
aaccctgaagccatggatgaagatgacagtgatgaagtggctgaaattaagcctgcacac
tttgaggagtccatgaaatatgctcgaagaagtgtgagtgatgctgacattaggaagtac
caggtttttgctcaaacattacagcaatcacgcggatttggaactgagttcaaatttgca
gagcacgcagctaatactacagcaactggggcaacaaccaacccattcgcttctgctaat
gctgctggagacgacgatgacttgtatagttaa
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