Nicotiana sylvestris (wood tobacco): 104214269
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Entry
104214269 CDS
T05026
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104214269
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsy03019
]
104214269
03012 Translation factors [BR:
nsy03012
]
104214269
Enzymes [BR:
nsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104214269
Messenger RNA biogenesis [BR:
nsy03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104214269
Translation factors [BR:
nsy03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
104214269
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
OB_NTP_bind
R3H
HA2_C
DEAD
HA2_N
ATPase
Ank_2
nSTAND3
Ank_5
Rad17
AAA_7
AAA_19
ABC_tran
AAA_22
Sigma54_activat
NPHP3_N
AAA_23
Motif
Other DBs
NCBI-GeneID:
104214269
NCBI-ProteinID:
XP_009762224
UniProt:
A0A1U7VIR4
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All DBs
Position
7:complement(13432936..13443242)
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AA seq
1212 aa
AA seq
DB search
MASTATGASPSSSGFGKTRQKKGKRQQEVTNVAESTRIRVAQVLEQFRASNDEVYTFESN
LSNRDRAAVHILCRKMGMKSKSSGRGDQRRISIFKTKNTVETLEGKDALSCFKFFGEAKD
VLQDLFTRYPPDNGETSELAVGKHSKKVDKYRGNKDDVFCKPAMNKSEIAKRVESLSSRI
ENTPNLRQITVQKSKLPIASFKDVITSTVESNQVVLISGETGCGKTTQVPQFILDHMWGK
GETCKIVCTQPRRISATSVSERISAERGESVGDTVGYKIRMESRGGKHSSIVFCTNGVLL
RVLVTKGSASFNKKAPRKMGTNDISDITHIIVVLCISHDEIHERDRYSDFMLAILRDLLP
SYPNLRLVLMSATLDAERFSKYFGGCPVIKVPGFTYPVKTFYLEDVLSIVKSTENNHLDS
TSTAAMSEESTLTEEYKVALDEAINLAFSDDDLDPLLDLISSDGGPKVFNYQHSLSGVTP
LMVFAGKGCIGDICMLLSFGADCHLRANDGKNALDWAERENQTEAAELIKKHMEKSSSNC
EEQQHLLDKYLSTVDPELIDDVLIEQLLRKICIDSEDGAILVFLPGWEDINRTRERLRSS
QYFKDTSKFSVIALHSMVPAVEQKKVFRHPPPGCRKIVLSTNIAETAITIDDVVYVIDSG
RMKEKSYDPYNNVSTLQSSWVSKASAKQREGRAGRCQPGICYHLYSKLRAASLPDFQVPE
IKRIPIEELCLQVKLLNPDCKIEEFLKKTLDPPVYETIRNAIIVLQDIGALSVDEKLTEL
GERLGSLPVHPLTSKMLLIAILLNCLDPALTLACASDYRDPFTLPMLPTEKKRASAARAE
LASWYGGRSDQLAVVAAFEGWKSAKESGQESRFCSTYFISSSTMNMLSGMRKQLQSELLR
NGFIPGDGSSCSLNAQDPGILHAVLVAGLYPMVGRLLPPLKGDRRVVIETAGGDKVRLHP
HSTKFKLSFKKFFDRPLIVYDEITRGDGGLHIRNCSVIGPLPLLLLATEIVVAPGNEEDD
DDDDNDDDGSDYEDADEDDGEEDNIKADQGEKVMSSPENTVKVIVDRWIPFKATALDVAQ
IYCLRERLAAAILFKVSHPGKVLPEILAASVYAMACILSYNGMAGISSLLEPVDSLTTMV
SATEIGQPDRGSYNGMDMNPNNSLSSPMYHGQHQRSYTPHQRGGIHISKGSFIHGGGTMK
RDHPKRQRGNGS
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcaacagctacaggagcttcaccatcatcatctgggtttggtaaaacgaggcaa
aagaaagggaaaagacaacaagaggttacaaatgttgcagaatccactcggattcgggtc
gcccaagttcttgaacagttccgtgcttctaatgatgaagtgtatacatttgaatcaaac
ctttcaaatcgcgacagagctgcagttcatattttatgccggaaaatgggtatgaaatcc
aaaagttctgggcgtggggatcaacgtcgtatatctattttcaagactaaaaatacagtg
gagacactggaaggaaaggatgcactaagttgttttaaattttttggagaagcaaaagat
gttctacaggatttatttacaagatatccacccgataatggggagacaagtgagctagca
gttgggaaacacagtaagaaagttgataaatatcgaggaaataaggatgatgtgttctgt
aaacctgcaatgaacaagtctgaaattgcaaaaagggtggagtcactttcttcaagaata
gaaaataccccaaacctgagacagattacagtacagaagtctaagcttccaattgcttcc
ttcaaggatgtcattacatcaacagttgaatctaatcaggtggtcttgatctctggtgaa
actggatgcggaaaaactacacaggtcccccaatttattttggatcatatgtggggtaaa
ggtgagacatgtaaaattgtatgtactcagccccgacgaatttctgccacatcagtttct
gagagaatctctgctgaaagaggcgaaagtgttggcgacactgttggttacaagatacgg
atggaaagcagaggtgggaagcactcatcaattgtgttttgtaccaatggggttctactg
agggtcctggttaccaaaggaagtgccagcttcaacaagaaagctcccaggaaaatgggc
acgaatgacatttctgatataacccacatcattgtggtactttgcatttctcacgacgaa
attcatgaaagggatcgctactccgatttcatgctcgcgattctcagggacttgcttccg
tcatatccaaatttgcgtctggttctgatgagtgctacacttgatgctgaacgcttttca
aaatactttggcggctgcccagttatcaaagtcccaggatttacttatcctgtaaaaacg
ttttatcttgaggatgtactttctattgtaaagtcaactgaaaataatcaccttgattcc
acctcaaccgctgccatgtccgaggagtcaacattaactgaggagtacaaagttgcctta
gatgaagcaattaatttggctttttcagatgatgatcttgatccccttttagatctaata
tcttctgacgggggaccaaaagtgttcaattatcagcattctttgagtggagtgacacca
ttgatggtgtttgctggaaaaggctgtattggtgacatttgcatgctcctctcttttggt
gctgactgccatttacgtgctaatgatggaaaaaatgctctagattgggctgaacgggag
aatcagacagaagctgctgagctaattaaaaaacacatggagaaatcatcttccaattgt
gaggaacagcagcatttacttgacaaatacctatcaacagttgaccctgaactgattgat
gatgtccttattgagcaactattaagaaaaatatgtatagactcagaggacggagcaatc
ctcgttttcctccctggttgggaggatattaacagaacacgagagagattacgctcaagc
cagtacttcaaagatacgtctaagttttcagtaatcgctctccattctatggttccagct
gtggagcaaaagaaggtctttagacaccctccaccaggctgccgcaaaattgttctttca
actaatattgctgaaactgccattaccattgatgatgttgtttatgtaatagacagtgga
cgaatgaaagaaaaaagttatgacccttataataatgtatcaacgcttcaatcttcttgg
gtctcaaaagctagtgcaaagcaaagagagggtcgtgctgggcgctgccagccaggaatt
tgttatcatctttattcaaaactccgagcagcttcattgcctgatttccaggttcctgag
attaagaggattcctatagaggaattatgtcttcaggtcaagcttcttaaccctgattgc
aagatagaagaatttctgaagaagacacttgaccctccggtttacgagaccatacgtaat
gcaatcattgttctgcaagatattggggcattatcagttgatgagaaacttacagagctt
ggtgaaaggctagggtctttaccagttcatcctcttacaagcaagatgctgttaattgct
atattattgaactgccttgatccagcattgacgttggcctgtgcttctgactatagagat
ccatttaccctacctatgttgccaactgagaagaagagagcttcagctgcaagagccgag
ttagcctcatggtatggtggaagaagtgatcaattagcagttgtggctgcgtttgagggc
tggaaaagtgcgaaagaaagtggccaagagtcgaggttttgttctacgtactttatatcc
tcaagtactatgaacatgttatcaggaatgcgtaaacaactgcaatctgaactcttgcgg
aatgggtttattccaggagatggatcttcctgtagccttaacgcacaggatccaggcata
ttacatgctgttcttgttgctggtttgtaccctatggttggaagactgcttccgcctctg
aaaggtgataggagggttgtcatagagactgcaggtggcgataaagttcgattgcaccct
cattctactaagtttaagctttcattcaaaaaattctttgatcgaccattaattgtatat
gatgagataacacgtggtgatggaggtcttcatataaggaactgtagtgtcattgggcca
ctcccacttttgttgctggcaacagagattgtagtggctcctggaaatgaagaagatgat
gatgatgacgacaatgatgatgatggaagtgattatgaagatgctgatgaggacgatggt
gaggaagataatattaaagcggatcaaggagagaaagttatgtcttctcctgaaaataca
gttaaggtcattgttgataggtggattcctttcaaggcgacagctcttgatgttgctcaa
atttactgcctgagagagcgattagctgcagcaattttattcaaggtttcacatcctgga
aaagttcttcctgagattcttgcagcctctgtatatgcaatggcttgcatcctctcgtac
aatgggatggcaggtatctcatcgctgctggagcctgtggactcgcttactacaatggtc
agtgctactgagattggtcagcctgatcgtgggagttataatggaatggatatgaatccc
aacaattctctcagttcacctatgtaccacggccagcatcagcgctcctatacacctcat
caaagaggcggcattcatatatcaaagggatcgttcatacatggaggaggaaccatgaaa
agagatcatcctaaacggcagcgtggaaatggatcttga
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